Wall clock time and date at job start Mon Mar 30 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36934 * 120.00330 * 2 1 4 4 H 1.07998 * 120.00163 * 202.34844 * 3 2 1 5 5 C 1.38807 * 119.99979 * 22.34231 * 3 2 1 6 6 N 1.31626 * 120.00116 * 11.34451 * 5 3 2 7 7 Si 1.86801 * 120.00063 * 191.34326 * 5 3 2 8 8 H 1.48502 * 109.47259 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47033 * 120.00055 * 7 5 3 10 10 H 1.48497 * 109.47280 * 239.99965 * 7 5 3 11 11 C 1.46502 * 119.99595 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47107 * 269.99902 * 11 2 1 13 13 C 1.38066 * 119.57098 * 95.00655 * 12 11 2 14 14 C 1.38843 * 119.32361 * 180.02562 * 13 12 11 15 15 C 1.38342 * 118.50939 * 359.97438 * 14 13 12 16 16 C 1.39099 * 119.09666 * 0.02562 * 15 14 13 17 17 N 1.39008 * 119.70197 * 179.97438 * 16 15 14 18 18 C 1.47020 * 110.99674 * 56.32138 * 17 16 15 19 19 C 1.53091 * 109.25289 * 182.34892 * 18 17 16 20 20 O 1.43018 * 109.29361 * 303.21338 * 19 18 17 21 21 C 1.43014 * 113.73297 * 58.65630 * 20 19 18 22 22 C 1.47007 * 110.99646 * 180.02562 * 17 16 15 23 23 N 1.31942 * 119.56995 * 275.27385 * 12 11 2 24 24 H 1.08998 * 109.47283 * 274.22423 * 1 2 3 25 25 H 1.09007 * 109.47323 * 34.22162 * 1 2 3 26 26 H 1.09001 * 109.47430 * 154.22067 * 1 2 3 27 27 H 0.96999 * 119.99944 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46766 * 149.99707 * 11 2 1 29 29 H 1.08999 * 109.47144 * 30.00249 * 11 2 1 30 30 H 1.07998 * 120.33859 * 359.97438 * 13 12 11 31 31 H 1.08007 * 120.74301 * 180.02562 * 14 13 12 32 32 H 1.07994 * 120.44900 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.47121 * 62.43613 * 18 17 16 34 34 H 1.08996 * 109.54577 * 302.30629 * 18 17 16 35 35 H 1.09004 * 109.50381 * 183.26420 * 19 18 17 36 36 H 1.08992 * 109.51041 * 63.17293 * 19 18 17 37 37 H 1.08999 * 109.51411 * 61.26219 * 21 20 19 38 38 H 1.09006 * 109.50486 * 181.35262 * 21 20 19 39 39 H 1.09005 * 109.51057 * 57.67457 * 22 17 16 40 40 H 1.08996 * 109.54634 * 297.56813 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2209 -0.3556 5 6 1.5339 2.3429 0.4570 6 7 0.3841 2.2691 1.0935 7 14 2.3368 4.0047 0.1687 8 1 3.6141 3.8166 -0.5652 9 1 1.4271 4.8615 -0.6335 10 1 2.6074 4.6570 1.4750 11 6 2.1974 -1.2688 0.0006 12 6 2.4485 -1.7032 1.4216 13 6 1.5754 -2.5832 2.0294 14 6 1.8115 -2.9796 3.3390 15 6 2.9218 -2.4748 3.9918 16 6 3.7591 -1.5917 3.3181 17 7 4.8780 -1.0763 3.9621 18 6 5.7469 -2.1557 4.4533 19 6 6.9333 -1.5463 5.2049 20 8 7.6270 -0.6430 4.3399 21 6 6.8101 0.4213 3.8445 22 6 5.6226 -0.1677 3.0784 23 7 3.4970 -1.2335 2.0704 24 1 -0.3634 0.0757 1.0248 25 1 -0.3634 0.8498 -0.5780 26 1 -0.3634 -0.9254 -0.4469 27 1 -0.0461 3.0776 1.4131 28 1 3.1497 -1.1387 -0.5134 29 1 1.6082 -2.0286 -0.5130 30 1 0.7172 -2.9588 1.4921 31 1 1.1436 -3.6673 3.8365 32 1 3.1355 -2.7624 5.0105 33 1 6.1124 -2.7405 3.6092 34 1 5.1822 -2.8008 5.1264 35 1 7.6104 -2.3399 5.5208 36 1 6.5714 -1.0067 6.0800 37 1 6.4439 1.0183 4.6797 38 1 7.3983 1.0512 3.1771 39 1 4.9666 0.6377 2.7481 40 1 5.9866 -0.7191 2.2115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237848437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:35 Heat of formation + Delta-G solvation = 15.025004 kcal Electronic energy + Delta-G solvation = -22133.283151 eV Core-core repulsion = 18948.609094 eV Total energy + Delta-G solvation = -3184.674057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.69343 -40.03064 -37.64871 -36.53489 -33.82899 -33.12064 -32.14510 -31.48825 -28.47562 -28.01841 -27.34395 -25.31543 -23.82643 -23.49171 -22.04981 -21.49739 -18.87970 -18.46140 -17.53060 -16.99869 -16.88400 -16.79692 -16.25922 -16.09253 -15.84075 -15.62507 -15.35582 -15.17238 -14.83821 -14.13486 -14.01615 -13.66155 -13.29877 -13.12823 -12.87217 -12.76381 -12.56538 -12.49693 -12.40602 -12.22361 -12.04220 -11.87989 -11.70696 -11.12365 -10.71273 -10.66409 -10.43271 -10.21625 -9.06801 -8.80241 -7.85482 -5.31386 0.30010 0.54068 1.41359 1.42164 1.52898 2.42885 2.48526 2.86254 2.92071 3.30046 3.50878 3.81935 3.83806 3.94503 4.03350 4.10513 4.16536 4.23376 4.28889 4.33790 4.42199 4.53987 4.67397 4.69650 4.78222 4.81185 4.86724 4.92478 4.94777 4.99531 5.15625 5.31584 5.37315 5.59985 5.63254 5.71430 5.72883 6.07722 6.20354 6.30438 7.12592 7.31625 7.82490 8.24401 9.18166 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.006567 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.555775 B = 4262.881097 C = 5611.973813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.240 4.240 4 H 0.064 0.936 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.963 3.037 8 H -0.267 1.267 9 H -0.287 1.287 10 H -0.296 1.296 11 C 0.189 3.811 12 C 0.129 3.871 13 C -0.203 4.203 14 C -0.054 4.054 15 C -0.202 4.202 16 C 0.282 3.718 17 N -0.482 5.482 18 C 0.023 3.977 19 C 0.063 3.937 20 O -0.398 6.398 21 C 0.069 3.931 22 C 0.040 3.960 23 N -0.532 5.532 24 H -0.002 1.002 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.246 0.754 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.041 0.959 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -12.462 7.846 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.323 5.323 3 C -0.370 4.370 4 H 0.082 0.918 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.792 3.208 8 H -0.191 1.191 9 H -0.214 1.214 10 H -0.223 1.223 11 C 0.063 3.937 12 C -0.012 4.012 13 C -0.225 4.225 14 C -0.080 4.080 15 C -0.224 4.224 16 C 0.050 3.950 17 N -0.200 5.200 18 C -0.102 4.102 19 C -0.014 4.014 20 O -0.316 6.316 21 C -0.008 4.008 22 C -0.088 4.088 23 N -0.247 5.247 24 H 0.016 0.984 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.162 0.838 31 H 0.186 0.814 32 H 0.174 0.826 33 H 0.060 0.940 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.083 0.917 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.150 -11.473 7.815 16.626 hybrid contribution -0.694 0.536 -0.207 0.901 sum 8.456 -10.936 7.608 15.779 Atomic orbital electron populations 1.20586 0.81976 0.96600 0.97432 1.44284 1.02327 1.01066 1.84640 1.19425 0.97674 0.86047 1.33897 0.91823 1.25742 0.98509 1.01703 0.98868 1.70244 1.19203 1.27144 1.42060 0.85250 0.78288 0.80381 0.76910 1.19112 1.21353 1.22348 1.20072 0.96616 0.87962 0.89097 1.22524 0.89078 0.90054 0.99533 1.22041 1.01622 1.01387 0.97417 1.21765 0.95619 0.97149 0.93456 1.21677 0.97150 1.01615 1.01998 1.20230 0.93841 0.92247 0.88701 1.59528 1.07046 1.17815 1.35656 1.23075 0.94745 0.92197 1.00216 1.22913 0.92987 0.93636 0.91833 1.87959 1.37461 1.40158 1.66068 1.22746 0.90693 0.89193 0.98123 1.22446 0.95574 0.96570 0.94193 1.67355 1.22783 1.25959 1.08650 0.98379 0.95962 0.94242 0.94506 0.93097 0.89368 0.83835 0.81389 0.82567 0.94024 0.86643 0.84993 0.91278 0.91815 0.86749 0.91686 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.89 9.01 127.77 1.15 10.04 16 2 N -0.60 -30.95 2.91 -731.33 -2.13 -33.08 16 3 C -0.24 -13.69 9.67 84.03 0.81 -12.88 16 4 H 0.06 3.65 7.84 -2.91 -0.02 3.63 16 5 C -0.05 -3.13 5.13 84.86 0.44 -2.70 16 6 N -0.94 -57.42 10.59 21.65 0.23 -57.20 16 7 Si 0.96 47.12 29.57 68.60 2.03 49.15 16 8 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 9 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 10 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 11 C 0.19 8.03 6.01 85.63 0.51 8.54 16 12 C 0.13 5.33 6.36 42.50 0.27 5.60 16 13 C -0.20 -6.89 9.71 22.37 0.22 -6.67 16 14 C -0.05 -1.53 10.17 22.44 0.23 -1.31 16 15 C -0.20 -6.02 9.23 22.50 0.21 -5.81 16 16 C 0.28 10.33 6.40 133.04 0.85 11.19 16 17 N -0.48 -15.47 4.75 -700.92 -3.33 -18.80 16 18 C 0.02 0.54 5.40 86.31 0.47 1.01 16 19 C 0.06 1.22 7.01 72.01 0.50 1.72 16 20 O -0.40 -10.14 10.83 -148.98 -1.61 -11.75 16 21 C 0.07 1.86 7.01 72.01 0.50 2.36 16 22 C 0.04 1.37 4.82 86.32 0.42 1.78 16 23 N -0.53 -23.00 8.62 -181.33 -1.56 -24.57 16 24 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 25 H 0.02 1.18 7.19 -2.38 -0.02 1.17 16 26 H 0.04 1.60 7.84 -2.39 -0.02 1.58 16 27 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.05 2.21 8.03 -2.39 -0.02 2.19 16 29 H 0.09 3.09 7.76 -2.39 -0.02 3.07 16 30 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 32 H 0.16 3.52 7.19 -2.91 -0.02 3.50 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.12 2.05 6.83 -2.39 -0.02 2.03 16 35 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 39 H 0.06 2.70 7.86 -2.38 -0.02 2.68 16 40 H 0.04 1.47 8.03 -2.39 -0.02 1.46 16 Total: -1.00 -72.64 325.63 1.22 -71.41 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.02 Total: 11.96 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.58 Total: 12.87 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -6.79 Total: -133.64 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -1.61 Total: -11.75 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -72.64 1.22 -71.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237848437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.437 kcal (2) G-P(sol) polarization free energy of solvation -72.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds