Wall clock time and date at job start Mon Mar 30 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99749 * 2 1 4 4 H 1.48500 * 109.47118 * 239.99946 * 3 2 1 5 5 H 1.48496 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46861 * 120.00313 * 3 2 1 7 7 C 1.37874 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 173.36778 * 7 2 1 9 9 C 1.50700 * 119.99939 * 353.36097 * 7 2 1 10 10 N 1.46900 * 110.01761 * 302.78936 * 9 7 2 11 11 C 1.46905 * 110.99766 * 304.01266 * 10 9 7 12 12 C 1.56345 * 110.17368 * 222.47794 * 11 10 9 13 13 C 1.51114 * 101.66358 * 216.00701 * 12 11 10 14 14 H 1.09003 * 110.00068 * 290.31721 * 13 12 11 15 15 C 1.50452 * 125.00675 * 156.76355 * 13 12 11 16 16 C 1.53502 * 104.48134 * 214.70883 * 15 13 12 17 17 O 1.20768 * 126.70995 * 187.11949 * 16 15 13 18 18 C 1.53963 * 106.57385 * 7.12050 * 16 15 13 19 19 C 1.51090 * 101.90982 * 24.94496 * 18 16 15 20 20 H 1.09004 * 109.46256 * 69.63040 * 19 18 16 21 21 C 1.50452 * 125.03320 * 203.30569 * 19 18 16 22 22 C 1.54277 * 110.02771 * 64.17658 * 9 7 2 23 23 C 1.54968 * 104.15857 * 95.75782 * 22 9 7 24 24 C 1.54885 * 102.77909 * 37.88345 * 23 22 9 25 25 C 1.53874 * 110.03475 * 181.39128 * 9 7 2 26 26 H 0.97001 * 119.99440 * 5.06494 * 1 2 3 27 27 H 1.00893 * 111.00524 * 67.96852 * 10 9 7 28 28 H 1.09000 * 110.20692 * 344.26382 * 11 10 9 29 29 H 1.09005 * 110.99239 * 334.10506 * 12 11 10 30 30 H 1.09006 * 110.98775 * 97.91254 * 12 11 10 31 31 H 1.09010 * 110.43531 * 333.45653 * 15 13 12 32 32 H 1.08996 * 110.43790 * 95.83347 * 15 13 12 33 33 H 1.08994 * 110.94470 * 266.78946 * 18 16 15 34 34 H 1.09006 * 110.94115 * 143.09809 * 18 16 15 35 35 H 1.08997 * 110.48421 * 26.84300 * 21 19 18 36 36 H 1.09000 * 110.48017 * 264.21678 * 21 19 18 37 37 H 1.09001 * 110.48157 * 214.39837 * 22 9 7 38 38 H 1.08993 * 110.48816 * 337.04443 * 22 9 7 39 39 H 1.08999 * 110.71345 * 279.57297 * 23 22 9 40 40 H 1.08995 * 110.76346 * 156.21918 * 23 22 9 41 41 H 1.09003 * 110.48902 * 203.40845 * 24 23 22 42 42 H 1.09003 * 110.48805 * 80.76473 * 24 23 22 43 43 H 1.08996 * 110.03222 * 359.95374 * 25 9 7 44 44 H 1.08997 * 110.02945 * 121.38418 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0791 -1.1970 -0.1086 9 6 1.2587 -2.4948 0.1498 10 7 0.4809 -2.4873 1.3959 11 6 1.3448 -2.2225 2.5542 12 6 0.9617 -3.1671 3.7397 13 6 1.1765 -2.2636 4.9318 14 1 2.2410 -2.0727 5.0679 15 6 0.5210 -2.4364 6.2749 16 6 0.2935 -1.0042 6.7782 17 8 -0.1012 -0.6774 7.8718 18 6 0.6668 -0.0659 5.6160 19 6 0.4582 -0.9587 4.4151 20 1 -0.6072 -1.1484 4.2841 21 6 1.1158 -0.7712 3.0749 22 6 0.3216 -2.7090 -1.0569 23 6 1.1417 -3.6049 -2.0194 24 6 1.8789 -4.5629 -1.0511 25 6 2.2487 -3.6728 0.1534 26 1 -0.4849 0.8368 -0.0742 27 1 -0.2736 -1.8192 1.3473 28 1 2.3911 -2.3642 2.2836 29 1 -0.0803 -3.4794 3.6691 30 1 1.6248 -4.0313 3.7803 31 1 -0.4303 -2.9584 6.1699 32 1 1.1793 -2.9798 6.9527 33 1 1.7070 0.2511 5.6899 34 1 0.0000 0.7958 5.5814 35 1 2.0674 -0.2515 3.1863 36 1 0.4577 -0.2234 2.4005 37 1 -0.5904 -3.2185 -0.7458 38 1 0.0850 -1.7561 -1.5300 39 1 1.8540 -3.0079 -2.5889 40 1 0.4823 -4.1611 -2.6856 41 1 2.7780 -4.9624 -1.5205 42 1 1.2187 -5.3722 -0.7388 43 1 3.2686 -3.3037 0.0456 44 1 2.1520 -4.2389 1.0797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254944502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:27 Heat of formation + Delta-G solvation = -45.982064 kcal Electronic energy + Delta-G solvation = -23068.782062 eV Core-core repulsion = 19985.002883 eV Total energy + Delta-G solvation = -3083.779179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30867 -38.30475 -37.24609 -33.76225 -32.31518 -30.12850 -30.01816 -27.51668 -26.49913 -25.82102 -24.23869 -23.03211 -20.11037 -19.84714 -19.20740 -18.86459 -18.21774 -16.50632 -15.94540 -15.29335 -14.98340 -14.79052 -14.55364 -14.15798 -13.89888 -13.59063 -13.47358 -12.87514 -12.63007 -12.30714 -12.05524 -11.75860 -11.42058 -11.37898 -11.13250 -10.94780 -10.72472 -10.53235 -10.40850 -10.33764 -10.16981 -10.01472 -9.81771 -9.69447 -9.53657 -9.43295 -9.34142 -9.26684 -9.20248 -8.35430 -6.99586 -6.03310 -4.18434 1.97632 3.21352 3.27870 3.31646 4.10783 4.28667 4.32994 4.99120 5.13754 5.17345 5.25471 5.34870 5.58172 5.68603 5.72846 5.78536 5.83290 5.86990 5.93731 5.95396 6.05065 6.15116 6.15969 6.40573 6.50401 6.51792 6.56486 6.61216 6.63271 6.77525 6.81260 6.84572 6.93848 7.00830 7.10163 7.14193 7.29065 7.38321 7.52078 7.55987 7.75968 7.85523 8.24228 8.73976 8.89555 9.12788 9.50887 10.91100 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.006487 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.069810 B = 4315.191692 C = 5434.889355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.876 3.124 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.050 0.950 9 C 0.233 3.767 10 N -0.678 5.678 11 C 0.111 3.889 12 C -0.096 4.096 13 C -0.114 4.114 14 H 0.074 0.926 15 C -0.160 4.160 16 C 0.369 3.631 17 O -0.456 6.456 18 C -0.163 4.163 19 C -0.106 4.106 20 H 0.074 0.926 21 C -0.122 4.122 22 C -0.094 4.094 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.109 4.109 26 H 0.263 0.737 27 H 0.355 0.645 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -4.402 5.526 7.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.144 3.856 10 N -0.310 5.310 11 C -0.001 4.001 12 C -0.134 4.134 13 C -0.133 4.133 14 H 0.092 0.908 15 C -0.198 4.198 16 C 0.244 3.756 17 O -0.330 6.330 18 C -0.201 4.201 19 C -0.124 4.124 20 H 0.092 0.908 21 C -0.161 4.161 22 C -0.133 4.133 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.147 4.147 26 H 0.073 0.927 27 H 0.177 0.823 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.952 -4.782 6.230 7.911 hybrid contribution 0.820 2.055 -0.247 2.227 sum 1.773 -2.726 5.984 6.811 Atomic orbital electron populations 1.69750 1.05488 1.26975 1.50537 1.24844 0.94702 0.98399 0.94677 0.86919 0.79999 0.83966 0.78699 1.20528 1.21333 1.20206 1.21792 0.93591 0.91249 1.49761 0.93134 1.19062 0.89253 0.90802 0.86514 1.61093 1.12800 1.55026 1.02102 1.22545 0.97553 0.89597 0.90377 1.21961 1.01670 0.96922 0.92879 1.21928 0.99740 0.98557 0.93044 0.90779 1.22073 1.03100 0.96315 0.98293 1.26416 0.69939 0.92792 0.86426 1.90376 1.35657 1.83442 1.23482 1.22420 1.03630 0.98942 0.95105 1.21952 1.00707 0.95162 0.94618 0.90753 1.22288 1.00315 0.99593 0.93926 1.22249 0.96289 0.98590 0.96126 1.22435 0.98645 0.97410 0.97392 1.22264 0.98471 0.97665 0.97201 1.22273 0.99185 0.96978 0.96278 0.92666 0.82301 0.91260 0.91203 0.92570 0.88379 0.89204 0.88168 0.89582 0.92957 0.89126 0.94359 0.90398 0.92439 0.93972 0.93876 0.93023 0.93424 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.75 9.33 55.43 0.52 -21.23 16 2 C 0.08 1.82 3.52 -17.82 -0.06 1.76 16 3 Si 0.88 19.72 29.55 -169.99 -5.02 14.69 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -12.63 6.63 -34.44 -0.23 -12.86 16 8 H 0.05 1.27 7.34 -52.49 -0.39 0.89 16 9 C 0.23 5.09 0.47 -131.63 -0.06 5.03 16 10 N -0.68 -14.07 5.85 -89.64 -0.52 -14.59 16 11 C 0.11 2.05 2.19 -64.37 -0.14 1.91 16 12 C -0.10 -1.46 6.41 -25.88 -0.17 -1.62 16 13 C -0.11 -1.52 2.70 -90.29 -0.24 -1.77 16 14 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 15 C -0.16 -1.91 6.58 -27.74 -0.18 -2.09 16 16 C 0.37 5.09 8.03 -25.97 -0.21 4.88 16 17 O -0.46 -7.58 17.99 5.99 0.11 -7.48 16 18 C -0.16 -2.19 6.61 -27.19 -0.18 -2.37 16 19 C -0.11 -1.58 2.70 -90.31 -0.24 -1.82 16 20 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 21 C -0.12 -2.23 5.44 -26.46 -0.14 -2.37 16 22 C -0.09 -2.06 5.54 -25.02 -0.14 -2.20 16 23 C -0.12 -2.31 6.91 -24.70 -0.17 -2.48 16 24 C -0.12 -2.12 6.83 -25.07 -0.17 -2.29 16 25 C -0.11 -2.16 5.25 -25.61 -0.13 -2.30 16 26 H 0.26 6.39 8.32 -40.82 -0.34 6.05 16 27 H 0.35 8.04 6.03 -39.30 -0.24 7.80 16 28 H 0.07 1.39 6.49 -51.93 -0.34 1.06 16 29 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.91 5.49 -51.93 -0.29 1.63 16 37 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.08 1.91 6.43 -51.93 -0.33 1.58 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.97 7.37 -51.93 -0.38 0.58 16 44 H 0.05 0.96 7.35 -51.93 -0.38 0.58 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -24.44 328.52 -9.84 -34.28 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.39 Total: 9.98 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.48 Total: -20.60 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.01 Total: -35.83 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.11 Total: -7.48 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -24.44 -9.84 -34.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254944502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.699 kcal (2) G-P(sol) polarization free energy of solvation -24.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds