Wall clock time and date at job start Mon Mar 30 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99749 * 2 1 4 4 H 1.48500 * 109.47118 * 239.99946 * 3 2 1 5 5 H 1.48496 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46861 * 120.00313 * 3 2 1 7 7 C 1.37874 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 173.36778 * 7 2 1 9 9 C 1.50700 * 119.99939 * 353.36097 * 7 2 1 10 10 N 1.46900 * 110.01761 * 302.78936 * 9 7 2 11 11 C 1.46905 * 110.99766 * 304.01266 * 10 9 7 12 12 C 1.56345 * 110.17368 * 222.47794 * 11 10 9 13 13 C 1.51114 * 101.66358 * 216.00701 * 12 11 10 14 14 H 1.09003 * 110.00068 * 290.31721 * 13 12 11 15 15 C 1.50452 * 125.00675 * 156.76355 * 13 12 11 16 16 C 1.53502 * 104.48134 * 214.70883 * 15 13 12 17 17 O 1.20768 * 126.70995 * 187.11949 * 16 15 13 18 18 C 1.53963 * 106.57385 * 7.12050 * 16 15 13 19 19 C 1.51090 * 101.90982 * 24.94496 * 18 16 15 20 20 H 1.09004 * 109.46256 * 69.63040 * 19 18 16 21 21 C 1.50452 * 125.03320 * 203.30569 * 19 18 16 22 22 C 1.54277 * 110.02771 * 64.17658 * 9 7 2 23 23 C 1.54968 * 104.15857 * 95.75782 * 22 9 7 24 24 C 1.54885 * 102.77909 * 37.88345 * 23 22 9 25 25 C 1.53874 * 110.03475 * 181.39128 * 9 7 2 26 26 H 0.97001 * 119.99440 * 5.06494 * 1 2 3 27 27 H 1.00893 * 111.00524 * 67.96852 * 10 9 7 28 28 H 1.09000 * 110.20692 * 344.26382 * 11 10 9 29 29 H 1.09005 * 110.99239 * 334.10506 * 12 11 10 30 30 H 1.09006 * 110.98775 * 97.91254 * 12 11 10 31 31 H 1.09010 * 110.43531 * 333.45653 * 15 13 12 32 32 H 1.08996 * 110.43790 * 95.83347 * 15 13 12 33 33 H 1.08994 * 110.94470 * 266.78946 * 18 16 15 34 34 H 1.09006 * 110.94115 * 143.09809 * 18 16 15 35 35 H 1.08997 * 110.48421 * 26.84300 * 21 19 18 36 36 H 1.09000 * 110.48017 * 264.21678 * 21 19 18 37 37 H 1.09001 * 110.48157 * 214.39837 * 22 9 7 38 38 H 1.08993 * 110.48816 * 337.04443 * 22 9 7 39 39 H 1.08999 * 110.71345 * 279.57297 * 23 22 9 40 40 H 1.08995 * 110.76346 * 156.21918 * 23 22 9 41 41 H 1.09003 * 110.48902 * 203.40845 * 24 23 22 42 42 H 1.09003 * 110.48805 * 80.76473 * 24 23 22 43 43 H 1.08996 * 110.03222 * 359.95374 * 25 9 7 44 44 H 1.08997 * 110.02945 * 121.38418 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0791 -1.1970 -0.1086 9 6 1.2587 -2.4948 0.1498 10 7 0.4809 -2.4873 1.3959 11 6 1.3448 -2.2225 2.5542 12 6 0.9617 -3.1671 3.7397 13 6 1.1765 -2.2636 4.9318 14 1 2.2410 -2.0727 5.0679 15 6 0.5210 -2.4364 6.2749 16 6 0.2935 -1.0042 6.7782 17 8 -0.1012 -0.6774 7.8718 18 6 0.6668 -0.0659 5.6160 19 6 0.4582 -0.9587 4.4151 20 1 -0.6072 -1.1484 4.2841 21 6 1.1158 -0.7712 3.0749 22 6 0.3216 -2.7090 -1.0569 23 6 1.1417 -3.6049 -2.0194 24 6 1.8789 -4.5629 -1.0511 25 6 2.2487 -3.6728 0.1534 26 1 -0.4849 0.8368 -0.0742 27 1 -0.2736 -1.8192 1.3473 28 1 2.3911 -2.3642 2.2836 29 1 -0.0803 -3.4794 3.6691 30 1 1.6248 -4.0313 3.7803 31 1 -0.4303 -2.9584 6.1699 32 1 1.1793 -2.9798 6.9527 33 1 1.7070 0.2511 5.6899 34 1 0.0000 0.7958 5.5814 35 1 2.0674 -0.2515 3.1863 36 1 0.4577 -0.2234 2.4005 37 1 -0.5904 -3.2185 -0.7458 38 1 0.0850 -1.7561 -1.5300 39 1 1.8540 -3.0079 -2.5889 40 1 0.4823 -4.1611 -2.6856 41 1 2.7780 -4.9624 -1.5205 42 1 1.2187 -5.3722 -0.7388 43 1 3.2686 -3.3037 0.0456 44 1 2.1520 -4.2389 1.0797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254944502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:27 Heat of formation + Delta-G solvation = -57.458154 kcal Electronic energy + Delta-G solvation = -23069.279703 eV Core-core repulsion = 19985.002883 eV Total energy + Delta-G solvation = -3084.276820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51633 -39.72541 -38.68397 -35.24551 -34.05171 -31.53084 -31.27359 -29.14582 -28.17342 -27.05272 -25.90625 -24.45807 -21.56225 -21.10582 -20.46779 -20.27664 -19.81484 -18.22407 -17.17566 -16.71401 -16.47893 -16.37372 -15.84898 -15.55391 -15.33245 -14.94390 -14.81340 -14.39327 -14.10867 -13.95521 -13.25345 -13.15628 -13.12654 -12.90146 -12.63305 -12.45590 -12.39854 -12.18580 -11.91930 -11.67434 -11.58692 -11.49104 -11.37535 -11.10303 -11.06341 -11.03158 -10.92895 -10.75948 -10.50735 -10.20229 -8.71014 -7.89813 -6.11117 0.88809 1.35796 1.41646 1.44115 2.44418 3.02367 3.11990 3.24102 3.82614 3.97713 4.09964 4.22270 4.27783 4.28967 4.32615 4.40505 4.47836 4.61861 4.68150 4.80483 4.83728 4.86549 4.95953 4.98582 5.05278 5.07099 5.14107 5.19654 5.27192 5.29628 5.35292 5.36969 5.46304 5.53481 5.57141 5.65099 5.66691 5.78192 5.78916 5.92232 6.06401 6.40528 6.43648 6.90597 7.15291 7.34585 7.60922 8.98748 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.006487 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.069810 B = 4315.191692 C = 5434.889355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.053 3.947 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.034 0.966 9 C 0.226 3.774 10 N -0.675 5.675 11 C 0.107 3.893 12 C -0.084 4.084 13 C -0.099 4.099 14 H 0.081 0.919 15 C -0.149 4.149 16 C 0.377 3.623 17 O -0.486 6.486 18 C -0.161 4.161 19 C -0.105 4.105 20 H 0.069 0.931 21 C -0.118 4.118 22 C -0.093 4.093 23 C -0.117 4.117 24 C -0.110 4.110 25 C -0.106 4.106 26 H 0.259 0.741 27 H 0.342 0.658 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -5.962 6.552 9.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.052 0.948 9 C 0.136 3.864 10 N -0.305 5.305 11 C -0.004 4.004 12 C -0.123 4.123 13 C -0.118 4.118 14 H 0.100 0.900 15 C -0.186 4.186 16 C 0.254 3.746 17 O -0.361 6.361 18 C -0.199 4.199 19 C -0.124 4.124 20 H 0.087 0.913 21 C -0.157 4.157 22 C -0.131 4.131 23 C -0.155 4.155 24 C -0.148 4.148 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.162 0.838 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.398 -6.352 7.253 9.742 hybrid contribution 0.704 2.592 -0.626 2.758 sum 2.103 -3.760 6.627 7.904 Atomic orbital electron populations 1.69827 1.05935 1.26848 1.50907 1.25141 0.95068 0.99762 0.94774 0.86376 0.79151 0.82269 0.78267 1.21108 1.21547 1.20077 1.21927 0.92857 0.92673 1.49655 0.94800 1.19135 0.89584 0.90624 0.87046 1.61187 1.12605 1.54337 1.02420 1.22633 0.96197 0.90769 0.90842 1.21809 1.01813 0.96772 0.91872 1.21826 1.00148 0.96609 0.93230 0.90045 1.22013 1.04064 0.95241 0.97290 1.26514 0.68720 0.93657 0.85687 1.90380 1.37167 1.83957 1.24581 1.22415 1.04430 0.98800 0.94221 1.21789 1.00179 0.96881 0.93543 0.91297 1.22104 0.99290 0.98971 0.95298 1.22148 0.96638 0.97551 0.96795 1.22396 0.98497 0.97261 0.97337 1.22229 0.99485 0.97229 0.95838 1.22193 0.97917 0.96581 0.97693 0.93108 0.83815 0.93078 0.91326 0.91188 0.87149 0.86764 0.87008 0.89601 0.94017 0.92233 0.94800 0.93643 0.93386 0.91782 0.91749 0.91619 0.94461 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.99 9.33 21.45 0.20 -44.79 16 2 C 0.05 2.62 3.52 84.65 0.30 2.92 16 3 Si 0.91 41.02 29.55 68.60 2.03 43.05 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.53 -26.08 6.63 25.60 0.17 -25.91 16 8 H 0.03 1.74 7.34 -2.91 -0.02 1.72 16 9 C 0.23 9.89 0.47 3.51 0.00 9.89 16 10 N -0.67 -28.04 5.85 -437.52 -2.56 -30.60 16 11 C 0.11 3.91 2.19 47.08 0.10 4.01 16 12 C -0.08 -2.38 6.41 31.14 0.20 -2.18 16 13 C -0.10 -2.40 2.70 -10.58 -0.03 -2.43 16 14 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 15 C -0.15 -3.03 6.58 29.94 0.20 -2.84 16 16 C 0.38 9.52 8.03 31.09 0.25 9.77 16 17 O -0.49 -15.26 17.99 -1.47 -0.03 -15.29 16 18 C -0.16 -4.06 6.61 30.30 0.20 -3.86 16 19 C -0.11 -3.02 2.70 -10.59 -0.03 -3.05 16 20 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 21 C -0.12 -4.30 5.44 30.77 0.17 -4.13 16 22 C -0.09 -4.07 5.54 31.70 0.18 -3.89 16 23 C -0.12 -4.31 6.91 31.91 0.22 -4.09 16 24 C -0.11 -3.69 6.83 31.67 0.22 -3.47 16 25 C -0.11 -4.08 5.25 31.32 0.16 -3.91 16 26 H 0.26 12.92 8.32 -92.71 -0.77 12.15 16 27 H 0.34 15.75 6.03 -89.70 -0.54 15.21 16 28 H 0.05 2.04 6.49 -2.39 -0.02 2.03 16 29 H 0.07 1.98 8.10 -2.38 -0.02 1.96 16 30 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 2.57 5.49 -2.39 -0.01 2.56 16 37 H 0.03 1.48 8.05 -2.39 -0.02 1.46 16 38 H 0.04 2.27 6.43 -2.39 -0.02 2.25 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.04 1.49 7.37 -2.39 -0.02 1.47 16 44 H 0.06 2.08 7.35 -2.39 -0.02 2.07 16 Total: -1.00 -52.87 328.52 2.39 -50.49 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.44 Total: 30.32 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 2.31 Total: -33.18 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -2.36 Total: -75.39 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.03 Total: -15.29 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -52.87 2.39 -50.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254944502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.973 kcal (2) G-P(sol) polarization free energy of solvation -52.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds