Wall clock time and date at job start Mon Mar 30 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46514 * 1 3 3 C 1.36934 * 119.99804 * 2 1 4 4 H 1.08002 * 119.99861 * 203.68062 * 3 2 1 5 5 C 1.38817 * 120.00101 * 23.67887 * 3 2 1 6 6 N 1.31613 * 119.99968 * 10.21363 * 5 3 2 7 7 Si 1.86796 * 119.99766 * 190.20714 * 5 3 2 8 8 H 1.48501 * 109.47196 * 60.00512 * 7 5 3 9 9 H 1.48500 * 109.47118 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47350 * 300.00178 * 7 5 3 11 11 C 1.46499 * 119.99731 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47191 * 269.99698 * 11 2 1 13 13 C 1.52999 * 109.47324 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47197 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00230 * 270.00391 * 14 13 12 16 16 C 1.34781 * 119.99780 * 90.00138 * 14 13 12 17 17 O 1.21509 * 120.00154 * 4.82569 * 16 14 13 18 18 C 1.48148 * 119.99728 * 184.82468 * 16 14 13 19 19 C 1.39817 * 120.91858 * 142.01800 * 18 16 14 20 20 C 1.38154 * 119.00105 * 179.97438 * 19 18 16 21 21 N 1.31815 * 120.89325 * 0.02562 * 20 19 18 22 22 C 1.31809 * 122.05080 * 359.97438 * 21 20 19 23 23 C 1.38143 * 120.89731 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46754 * 274.98588 * 1 2 3 25 25 H 1.08994 * 109.46949 * 34.98850 * 1 2 3 26 26 H 1.08995 * 109.46613 * 154.98849 * 1 2 3 27 27 H 0.97005 * 120.00142 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.46885 * 150.00302 * 11 2 1 29 29 H 1.09001 * 109.47482 * 30.00081 * 11 2 1 30 30 H 1.08999 * 109.47154 * 60.00196 * 12 11 2 31 31 H 1.09001 * 109.47220 * 300.00543 * 12 11 2 32 32 H 1.09000 * 109.46910 * 60.00506 * 13 12 11 33 33 H 1.08998 * 109.46820 * 300.00352 * 13 12 11 34 34 H 1.09000 * 109.46683 * 264.74742 * 15 14 13 35 35 H 1.09001 * 109.46653 * 24.74364 * 15 14 13 36 36 H 1.08999 * 109.47289 * 144.74731 * 15 14 13 37 37 H 1.07998 * 120.50393 * 359.69967 * 19 18 16 38 38 H 1.08001 * 119.55121 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.55012 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.50290 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1616 1.2253 -0.3757 5 6 1.5433 2.3375 0.4828 6 7 0.3956 2.2583 1.1220 7 14 2.3564 3.9994 0.2254 8 1 2.5075 4.2565 -1.2294 9 1 1.5141 5.0617 0.8313 10 1 3.6941 4.0012 0.8699 11 6 2.1976 -1.2688 0.0006 12 6 2.4526 -1.7098 1.4432 13 6 3.2181 -3.0345 1.4439 14 7 3.4628 -3.4564 2.8252 15 6 4.6837 -3.0326 3.5153 16 6 2.5648 -4.2345 3.4613 17 8 1.5961 -4.6583 2.8626 18 6 2.7588 -4.5731 4.8905 19 6 1.6712 -4.6423 5.7664 20 6 1.8974 -4.9620 7.0913 21 7 3.1171 -5.1993 7.5314 22 6 4.1694 -5.1448 6.7397 23 6 4.0343 -4.8334 5.4006 24 1 -0.3633 0.0893 1.0238 25 1 -0.3633 0.8419 -0.5892 26 1 -0.3632 -0.9313 -0.4345 27 1 -0.0281 3.0630 1.4598 28 1 3.1500 -1.1386 -0.5133 29 1 1.6085 -2.0287 -0.5129 30 1 1.5002 -1.8399 1.9572 31 1 3.0417 -0.9499 1.9567 32 1 4.1706 -2.9040 0.9301 33 1 2.6294 -3.7945 0.9302 34 1 5.4420 -3.8101 3.4225 35 1 5.0526 -2.1099 3.0672 36 1 4.4648 -2.8624 4.5695 37 1 0.6698 -4.4443 5.4137 38 1 1.0639 -5.0174 7.7757 39 1 5.1507 -5.3462 7.1433 40 1 4.9010 -4.7901 4.7577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273474152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:26 Heat of formation + Delta-G solvation = 35.467887 kcal Electronic energy + Delta-G solvation = -21149.510720 eV Core-core repulsion = 17965.723133 eV Total energy + Delta-G solvation = -3183.787588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87090 -39.21100 -36.32841 -35.41749 -33.25932 -32.01569 -31.48639 -30.08585 -27.19278 -26.20354 -25.72197 -24.01968 -23.66355 -22.07736 -20.23825 -19.84915 -17.74342 -16.95144 -16.68479 -16.24939 -15.90358 -15.45467 -15.12597 -14.67652 -14.16613 -14.03556 -13.94606 -13.59021 -13.34173 -13.19634 -12.89417 -12.65561 -12.31546 -11.78000 -11.56553 -11.39003 -10.93989 -10.81407 -10.69939 -10.43799 -10.33817 -10.08021 -10.05106 -9.89468 -9.71514 -9.58348 -9.43178 -8.68675 -8.51924 -6.70734 -5.69431 -3.16859 0.60036 0.82805 2.63129 2.92902 3.38180 3.43745 3.44640 3.57690 4.13862 4.18761 4.51108 4.53922 4.68266 4.80432 4.98711 5.13528 5.26388 5.31744 5.40727 5.47618 5.52222 5.55696 5.58144 5.82116 5.83053 6.03112 6.08781 6.21219 6.33180 6.49097 6.61824 6.83131 6.85622 7.12653 7.28456 7.42743 7.64007 7.77975 7.83440 8.03962 8.43698 9.26900 9.90497 10.40700 11.35198 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022748 B = 0.003664 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.606916 B = 7640.388303 C = 7829.744507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.114 3.886 14 N -0.603 5.603 15 C 0.070 3.930 16 C 0.554 3.446 17 O -0.525 6.525 18 C -0.077 4.077 19 C -0.120 4.120 20 C 0.097 3.903 21 N -0.475 5.475 22 C 0.093 3.907 23 C -0.152 4.152 24 H 0.028 0.972 25 H 0.042 0.958 26 H -0.003 1.003 27 H 0.252 0.748 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.755 -14.447 8.818 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.028 3.972 12 C -0.192 4.192 13 C -0.008 4.008 14 N -0.335 5.335 15 C -0.073 4.073 16 C 0.341 3.659 17 O -0.402 6.402 18 C -0.089 4.089 19 C -0.141 4.141 20 C -0.060 4.060 21 N -0.185 5.185 22 C -0.064 4.064 23 C -0.172 4.172 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.178 0.822 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.235 -14.710 9.388 19.296 hybrid contribution 0.339 1.324 -0.777 1.572 sum 8.574 -13.385 8.611 18.078 Atomic orbital electron populations 1.20792 0.82552 0.95367 0.99358 1.43954 1.01949 1.00673 1.85923 1.19170 0.98693 0.85786 1.34846 0.91528 1.25068 0.97710 0.98564 0.98309 1.70055 1.18056 1.27321 1.39916 0.86341 0.78517 0.83864 0.77818 1.21060 1.21636 1.21017 1.20732 0.95686 0.88268 0.92492 1.22643 0.99959 0.94342 1.02247 1.21751 1.00899 0.98080 0.80060 1.47844 1.20847 1.49701 1.15134 1.22171 0.86154 1.00723 0.98247 1.18258 0.82789 0.78906 0.85921 1.90801 1.29511 1.52785 1.67055 1.20414 0.94470 0.99607 0.94371 1.22314 0.99933 0.97720 0.94092 1.22796 0.94675 0.94987 0.93521 1.67551 0.99540 1.12060 1.39303 1.22755 0.97946 0.95753 0.89917 1.22710 0.97434 0.99467 0.97592 0.95331 0.93971 0.98445 0.93744 0.93917 0.94405 0.92457 0.91883 0.90554 0.89975 0.92256 0.90077 0.90848 0.83707 0.81995 0.82197 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.23 9.01 59.85 0.54 4.77 16 2 N -0.60 -15.56 2.92 -181.11 -0.53 -16.09 16 3 C -0.26 -7.08 9.66 -15.06 -0.15 -7.23 16 4 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 5 C 0.00 0.05 5.15 -17.43 -0.09 -0.04 16 6 N -0.91 -26.92 10.60 55.49 0.59 -26.33 16 7 Si 0.90 21.90 29.57 -169.99 -5.03 16.88 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 C 0.16 3.24 5.71 -4.04 -0.02 3.21 16 12 C -0.15 -2.85 5.86 -26.73 -0.16 -3.01 16 13 C 0.11 1.68 5.42 -4.04 -0.02 1.66 16 14 N -0.60 -8.13 2.87 -182.58 -0.52 -8.65 16 15 C 0.07 0.67 8.88 59.85 0.53 1.20 16 16 C 0.55 8.35 7.41 -12.19 -0.09 8.25 16 17 O -0.53 -9.82 16.49 5.36 0.09 -9.73 16 18 C -0.08 -0.95 5.29 -104.65 -0.55 -1.50 16 19 C -0.12 -1.39 9.75 -39.02 -0.38 -1.77 16 20 C 0.10 0.98 11.17 -17.59 -0.20 0.79 16 21 N -0.48 -5.13 10.33 -13.31 -0.14 -5.27 16 22 C 0.09 0.83 11.17 -17.60 -0.20 0.63 16 23 C -0.15 -1.41 7.68 -39.03 -0.30 -1.71 16 24 H 0.03 0.80 7.34 -51.93 -0.38 0.41 16 25 H 0.04 1.15 7.30 -51.93 -0.38 0.77 16 26 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 27 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 28 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 29 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.08 1.28 7.36 -51.93 -0.38 0.89 16 34 H 0.06 0.40 6.88 -51.93 -0.36 0.04 16 35 H 0.08 0.77 8.03 -51.93 -0.42 0.35 16 36 H 0.07 0.67 5.84 -51.93 -0.30 0.36 16 37 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.15 1.01 5.29 -52.49 -0.28 0.73 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -34.11 332.75 -7.42 -41.53 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.81 Total: -2.59 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.08 Total: 5.25 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.60 Total: -56.35 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.11 -7.42 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273474152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.994 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds