Wall clock time and date at job start Mon Mar 30 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36987 * 119.99390 * 2 1 4 4 H 1.08004 * 119.99556 * 193.96149 * 3 2 1 5 5 C 1.38970 * 120.00397 * 13.97083 * 3 2 1 6 6 N 1.31422 * 120.00047 * 28.59187 * 5 3 2 7 7 Si 1.86800 * 120.00109 * 208.59831 * 5 3 2 8 8 H 1.48499 * 109.46944 * 94.99196 * 7 5 3 9 9 H 1.48503 * 109.47198 * 214.99204 * 7 5 3 10 10 H 1.48502 * 109.46979 * 334.99351 * 7 5 3 11 11 C 1.34768 * 120.00336 * 180.02562 * 2 1 3 12 12 O 1.21625 * 120.00184 * 181.04745 * 11 2 1 13 13 C 1.47356 * 120.00166 * 1.04894 * 11 2 1 14 14 C 1.41324 * 126.41901 * 342.40408 * 13 11 2 15 15 N 1.30452 * 108.02688 * 179.79164 * 14 13 11 16 16 N 1.39932 * 108.91238 * 0.38172 * 15 14 13 17 17 C 1.46500 * 125.74958 * 179.87449 * 16 15 14 18 18 C 1.52999 * 109.46942 * 94.69147 * 17 16 15 19 19 C 1.53007 * 109.47062 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.46688 * 299.99511 * 19 18 17 21 21 C 1.53008 * 109.46921 * 60.00327 * 20 19 18 22 22 C 1.52998 * 109.46917 * 214.68724 * 17 16 15 23 23 C 1.34291 * 108.49760 * 359.60643 * 16 15 14 24 24 H 1.09000 * 109.46968 * 264.00060 * 1 2 3 25 25 H 1.08996 * 109.47094 * 24.00033 * 1 2 3 26 26 H 1.09002 * 109.46780 * 144.00445 * 1 2 3 27 27 H 0.96997 * 120.00009 * 180.02562 * 6 5 3 28 28 H 1.07998 * 125.98400 * 0.02874 * 14 13 11 29 29 H 1.08992 * 109.46903 * 334.69063 * 17 16 15 30 30 H 1.09002 * 109.47356 * 60.00011 * 18 17 16 31 31 H 1.09000 * 109.46905 * 299.99617 * 18 17 16 32 32 H 1.08992 * 109.47011 * 59.99776 * 19 18 17 33 33 H 1.08993 * 109.47105 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.47021 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.47462 * 300.00031 * 20 19 18 36 36 H 1.08998 * 109.47446 * 60.00102 * 21 20 19 37 37 H 1.09000 * 109.46856 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.46883 * 60.00252 * 22 17 16 39 39 H 1.09002 * 109.47462 * 300.00039 * 22 17 16 40 40 H 1.07996 * 126.29490 * 180.20487 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1864 0.0000 4 1 3.2059 1.2003 -0.2257 5 6 1.4858 2.3721 0.2906 6 7 0.4330 2.3599 1.0772 7 14 2.0894 3.9832 -0.4371 8 1 1.3337 4.2785 -1.6808 9 1 1.8778 5.0789 0.5427 10 1 3.5365 3.8729 -0.7515 11 6 2.1389 -1.1671 -0.0005 12 8 3.3550 -1.1671 0.0187 13 6 1.4025 -2.4432 -0.0245 14 6 0.0389 -2.6311 0.2960 15 7 -0.2392 -3.8973 0.1507 16 7 0.9177 -4.5721 -0.2551 17 6 1.0212 -6.0087 -0.5226 18 6 0.8238 -6.2644 -2.0181 19 6 0.9313 -7.7649 -2.2975 20 6 2.3135 -8.2649 -1.8728 21 6 2.5109 -8.0091 -0.3772 22 6 2.4036 -6.5081 -0.0980 23 6 1.9154 -3.6798 -0.3635 24 1 -0.3633 -0.1074 1.0220 25 1 -0.3633 0.9388 -0.4180 26 1 -0.3633 -0.8315 -0.6040 27 1 -0.0307 3.1875 1.2796 28 1 -0.6527 -1.8606 0.6032 29 1 0.2541 -6.5394 0.0411 30 1 1.5909 -5.7336 -2.5819 31 1 -0.1611 -5.9086 -2.3206 32 1 0.1639 -8.2953 -1.7338 33 1 0.7902 -7.9471 -3.3628 34 1 2.3900 -9.3339 -2.0713 35 1 3.0809 -7.7344 -2.4365 36 1 1.7436 -8.5396 0.1866 37 1 3.4954 -8.3657 -0.0745 38 1 2.5443 -6.3259 0.9674 39 1 3.1708 -5.9773 -0.6618 40 1 2.9320 -3.8906 -0.6607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321707975.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:00 Heat of formation + Delta-G solvation = 46.600667 kcal Electronic energy + Delta-G solvation = -21576.572798 eV Core-core repulsion = 18393.267964 eV Total energy + Delta-G solvation = -3183.304834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02953 -38.66539 -37.70876 -34.61384 -33.07321 -31.58591 -31.15449 -29.65362 -28.85083 -26.36032 -24.83464 -23.29721 -22.97481 -21.51644 -20.47802 -19.78013 -18.81614 -17.16919 -16.72260 -15.66805 -15.28262 -14.89174 -14.68879 -14.42765 -14.29429 -14.07190 -13.93528 -13.60084 -13.00684 -12.64645 -12.56467 -12.41228 -12.37883 -11.73259 -11.53892 -11.46124 -11.37772 -11.17072 -10.95911 -10.76063 -10.64750 -10.57296 -10.38627 -10.28405 -10.13660 -9.04686 -8.90808 -8.36883 -8.00285 -7.69022 -6.38190 -3.70800 2.13588 2.66074 2.87384 3.24030 3.29755 3.35729 4.17259 4.26830 4.38482 4.45880 4.56556 4.70038 4.85167 4.92868 5.01715 5.10400 5.12317 5.20849 5.26839 5.29747 5.42881 5.48262 5.70667 5.70983 5.75312 5.79795 5.88029 5.92389 6.00238 6.04722 6.14072 6.30012 6.40846 6.79200 6.98213 7.13039 7.31634 7.61676 8.05699 8.20015 8.55176 9.25155 9.50367 10.11603 10.68675 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040736 B = 0.003702 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.191077 B = 7562.518755 C = 7819.922623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.435 5.435 3 C -0.311 4.311 4 H 0.105 0.895 5 C 0.033 3.967 6 N -0.863 5.863 7 Si 0.915 3.085 8 H -0.278 1.278 9 H -0.285 1.285 10 H -0.268 1.268 11 C 0.512 3.488 12 O -0.601 6.601 13 C -0.249 4.249 14 C 0.059 3.941 15 N -0.313 5.313 16 N -0.367 5.367 17 C 0.166 3.834 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.133 4.133 23 C 0.096 3.904 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.268 0.732 28 H 0.201 0.799 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 -18.636 -4.969 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.151 5.151 3 C -0.438 4.438 4 H 0.123 0.877 5 C -0.171 4.171 6 N -0.501 5.501 7 Si 0.742 3.258 8 H -0.204 1.204 9 H -0.211 1.211 10 H -0.192 1.192 11 C 0.301 3.699 12 O -0.487 6.487 13 C -0.264 4.264 14 C -0.127 4.127 15 N -0.133 5.133 16 N -0.148 5.148 17 C 0.064 3.936 18 C -0.170 4.170 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.151 4.151 22 C -0.172 4.172 23 C -0.054 4.054 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.217 0.783 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.365 -19.477 -4.808 20.200 hybrid contribution 0.642 1.594 -0.240 1.735 sum -1.723 -17.883 -5.047 18.661 Atomic orbital electron populations 1.21965 0.81793 1.01102 1.00019 1.43413 1.05228 1.04732 1.61773 1.19690 0.96225 0.82151 1.45779 0.87748 1.25207 0.96828 0.99568 0.95516 1.70165 1.21536 1.28741 1.29640 0.86089 0.79621 0.81133 0.78998 1.20403 1.21130 1.19217 1.16958 0.86604 0.82122 0.84226 1.90572 1.13470 1.87061 1.57640 1.20674 0.94702 0.95178 1.15801 1.24916 0.96018 0.93696 0.98105 1.77052 1.06598 1.06911 1.22775 1.48529 1.07095 1.07036 1.52114 1.21234 0.99228 0.76254 0.96912 1.21999 1.03266 0.97069 0.94671 1.21499 0.97512 0.94691 1.01590 1.21611 0.97399 1.01095 0.96075 1.21492 1.02423 0.94668 0.96560 1.21972 0.95642 0.96910 1.02625 1.22675 0.94729 0.88654 0.99311 0.93060 0.90536 0.93889 0.92189 0.78295 0.88256 0.91094 0.90926 0.91602 0.91318 0.91630 0.91588 0.91551 0.91076 0.90669 0.90592 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.16 7.19 59.85 0.43 2.59 16 2 N -0.43 -11.56 3.02 -123.44 -0.37 -11.93 16 3 C -0.31 -8.87 9.32 -14.98 -0.14 -9.01 16 4 H 0.10 3.13 7.40 -52.48 -0.39 2.75 16 5 C 0.03 0.89 4.70 -17.46 -0.08 0.81 16 6 N -0.86 -23.11 11.26 55.50 0.62 -22.49 16 7 Si 0.92 20.69 29.64 -169.99 -5.04 15.65 16 8 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 9 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.51 13.35 7.61 -12.55 -0.10 13.26 16 12 O -0.60 -17.49 16.57 5.26 0.09 -17.40 16 13 C -0.25 -5.31 5.83 -105.06 -0.61 -5.92 16 14 C 0.06 1.12 9.76 -16.96 -0.17 0.96 16 15 N -0.31 -5.61 12.50 30.87 0.39 -5.23 16 16 N -0.37 -5.79 3.50 -54.29 -0.19 -5.98 16 17 C 0.17 1.88 3.18 -67.93 -0.22 1.67 16 18 C -0.13 -1.30 5.53 -26.73 -0.15 -1.45 16 19 C -0.11 -0.84 5.92 -26.73 -0.16 -1.00 16 20 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 21 C -0.11 -0.81 5.93 -26.70 -0.16 -0.96 16 22 C -0.13 -1.27 4.84 -26.71 -0.13 -1.40 16 23 C 0.10 1.71 10.44 -16.52 -0.17 1.54 16 24 H 0.05 1.15 7.33 -51.93 -0.38 0.77 16 25 H 0.08 1.82 6.40 -51.93 -0.33 1.48 16 26 H 0.04 0.85 5.21 -51.93 -0.27 0.58 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 28 H 0.20 3.55 4.88 -52.49 -0.26 3.29 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.74 7.13 -51.93 -0.37 0.37 16 40 H 0.18 2.81 7.23 -52.49 -0.38 2.43 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -32.78 319.25 -7.24 -40.02 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.74 Total: 2.47 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.81 Total: 0.08 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.45 Total: -45.62 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.09 Total: -17.40 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.04 Total: 15.65 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.78 -7.24 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321707975.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.618 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds