Wall clock time and date at job start Mon Mar 30 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36987 * 119.99390 * 2 1 4 4 H 1.08004 * 119.99556 * 193.96149 * 3 2 1 5 5 C 1.38970 * 120.00397 * 13.97083 * 3 2 1 6 6 N 1.31422 * 120.00047 * 28.59187 * 5 3 2 7 7 Si 1.86800 * 120.00109 * 208.59831 * 5 3 2 8 8 H 1.48499 * 109.46944 * 94.99196 * 7 5 3 9 9 H 1.48503 * 109.47198 * 214.99204 * 7 5 3 10 10 H 1.48502 * 109.46979 * 334.99351 * 7 5 3 11 11 C 1.34768 * 120.00336 * 180.02562 * 2 1 3 12 12 O 1.21625 * 120.00184 * 181.04745 * 11 2 1 13 13 C 1.47356 * 120.00166 * 1.04894 * 11 2 1 14 14 C 1.41324 * 126.41901 * 342.40408 * 13 11 2 15 15 N 1.30452 * 108.02688 * 179.79164 * 14 13 11 16 16 N 1.39932 * 108.91238 * 0.38172 * 15 14 13 17 17 C 1.46500 * 125.74958 * 179.87449 * 16 15 14 18 18 C 1.52999 * 109.46942 * 94.69147 * 17 16 15 19 19 C 1.53007 * 109.47062 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.46688 * 299.99511 * 19 18 17 21 21 C 1.53008 * 109.46921 * 60.00327 * 20 19 18 22 22 C 1.52998 * 109.46917 * 214.68724 * 17 16 15 23 23 C 1.34291 * 108.49760 * 359.60643 * 16 15 14 24 24 H 1.09000 * 109.46968 * 264.00060 * 1 2 3 25 25 H 1.08996 * 109.47094 * 24.00033 * 1 2 3 26 26 H 1.09002 * 109.46780 * 144.00445 * 1 2 3 27 27 H 0.96997 * 120.00009 * 180.02562 * 6 5 3 28 28 H 1.07998 * 125.98400 * 0.02874 * 14 13 11 29 29 H 1.08992 * 109.46903 * 334.69063 * 17 16 15 30 30 H 1.09002 * 109.47356 * 60.00011 * 18 17 16 31 31 H 1.09000 * 109.46905 * 299.99617 * 18 17 16 32 32 H 1.08992 * 109.47011 * 59.99776 * 19 18 17 33 33 H 1.08993 * 109.47105 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.47021 * 179.97438 * 20 19 18 35 35 H 1.09002 * 109.47462 * 300.00031 * 20 19 18 36 36 H 1.08998 * 109.47446 * 60.00102 * 21 20 19 37 37 H 1.09000 * 109.46856 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.46883 * 60.00252 * 22 17 16 39 39 H 1.09002 * 109.47462 * 300.00039 * 22 17 16 40 40 H 1.07996 * 126.29490 * 180.20487 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1864 0.0000 4 1 3.2059 1.2003 -0.2257 5 6 1.4858 2.3721 0.2906 6 7 0.4330 2.3599 1.0772 7 14 2.0894 3.9832 -0.4371 8 1 1.3337 4.2785 -1.6808 9 1 1.8778 5.0789 0.5427 10 1 3.5365 3.8729 -0.7515 11 6 2.1389 -1.1671 -0.0005 12 8 3.3550 -1.1671 0.0187 13 6 1.4025 -2.4432 -0.0245 14 6 0.0389 -2.6311 0.2960 15 7 -0.2392 -3.8973 0.1507 16 7 0.9177 -4.5721 -0.2551 17 6 1.0212 -6.0087 -0.5226 18 6 0.8238 -6.2644 -2.0181 19 6 0.9313 -7.7649 -2.2975 20 6 2.3135 -8.2649 -1.8728 21 6 2.5109 -8.0091 -0.3772 22 6 2.4036 -6.5081 -0.0980 23 6 1.9154 -3.6798 -0.3635 24 1 -0.3633 -0.1074 1.0220 25 1 -0.3633 0.9388 -0.4180 26 1 -0.3633 -0.8315 -0.6040 27 1 -0.0307 3.1875 1.2796 28 1 -0.6527 -1.8606 0.6032 29 1 0.2541 -6.5394 0.0411 30 1 1.5909 -5.7336 -2.5819 31 1 -0.1611 -5.9086 -2.3206 32 1 0.1639 -8.2953 -1.7338 33 1 0.7902 -7.9471 -3.3628 34 1 2.3900 -9.3339 -2.0713 35 1 3.0809 -7.7344 -2.4365 36 1 1.7436 -8.5396 0.1866 37 1 3.4954 -8.3657 -0.0745 38 1 2.5443 -6.3259 0.9674 39 1 3.1708 -5.9773 -0.6618 40 1 2.9320 -3.8906 -0.6607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321707975.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:00 Heat of formation + Delta-G solvation = 26.418058 kcal Electronic energy + Delta-G solvation = -21577.447982 eV Core-core repulsion = 18393.267964 eV Total energy + Delta-G solvation = -3184.180018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.44921 -40.06399 -39.09110 -36.67057 -34.31306 -33.47726 -31.86865 -31.14975 -30.06548 -28.17810 -26.74929 -24.53667 -23.70846 -22.91348 -21.65801 -20.96645 -20.23056 -19.04435 -18.32020 -17.26270 -16.60565 -16.29514 -16.20861 -15.79146 -15.53353 -15.47277 -15.06264 -14.92215 -14.38943 -13.97825 -13.86755 -13.67722 -13.42794 -13.29683 -13.22859 -13.01535 -12.43146 -12.39860 -12.18994 -12.14099 -12.11230 -11.98972 -11.53804 -11.39697 -11.22222 -10.93024 -10.41987 -10.39513 -9.75474 -9.55103 -8.42890 -5.85310 0.64947 1.22489 1.41359 1.44505 1.47760 1.57264 2.30479 2.51176 3.04273 3.18966 3.43300 3.64413 3.78292 3.86695 3.92877 4.10313 4.18617 4.25312 4.30189 4.42444 4.44970 4.51536 4.58711 4.61715 4.79247 4.88986 4.94336 5.00473 5.03171 5.14490 5.16032 5.23240 5.28908 5.32968 5.45857 5.49371 5.51459 5.98499 6.10264 6.48508 6.61499 7.17808 7.48247 8.09103 8.63487 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040736 B = 0.003702 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.191077 B = 7562.518755 C = 7819.922623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.449 5.449 3 C -0.357 4.357 4 H 0.075 0.925 5 C 0.006 3.994 6 N -0.878 5.878 7 Si 0.984 3.016 8 H -0.264 1.264 9 H -0.274 1.274 10 H -0.275 1.275 11 C 0.503 3.497 12 O -0.645 6.645 13 C -0.288 4.288 14 C 0.060 3.940 15 N -0.315 5.315 16 N -0.351 5.351 17 C 0.155 3.845 18 C -0.127 4.127 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.108 4.108 22 C -0.131 4.131 23 C 0.116 3.884 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.277 0.723 28 H 0.208 0.792 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -20.258 -5.645 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.166 5.166 3 C -0.484 4.484 4 H 0.093 0.907 5 C -0.198 4.198 6 N -0.515 5.515 7 Si 0.807 3.193 8 H -0.189 1.189 9 H -0.199 1.199 10 H -0.199 1.199 11 C 0.294 3.706 12 O -0.536 6.536 13 C -0.303 4.303 14 C -0.126 4.126 15 N -0.135 5.135 16 N -0.130 5.130 17 C 0.056 3.944 18 C -0.165 4.165 19 C -0.147 4.147 20 C -0.160 4.160 21 C -0.146 4.146 22 C -0.169 4.169 23 C -0.036 4.036 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.224 0.776 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.179 -21.132 -5.479 22.062 hybrid contribution 0.867 1.961 -0.002 2.144 sum -2.313 -19.171 -5.482 20.073 Atomic orbital electron populations 1.21948 0.79804 1.01529 1.00351 1.43633 1.06591 1.04512 1.61816 1.19610 0.95760 0.84061 1.48994 0.90726 1.25984 0.96895 1.02153 0.94775 1.70194 1.21956 1.30146 1.29173 0.85083 0.78715 0.76852 0.78650 1.18916 1.19869 1.19942 1.17626 0.86450 0.83497 0.83045 1.90510 1.15462 1.87995 1.59588 1.20380 0.95878 0.94231 1.19812 1.24911 0.95142 0.94369 0.98139 1.77024 1.07436 1.06356 1.22722 1.48959 1.05851 1.08400 1.49782 1.21749 1.00836 0.73507 0.98340 1.21972 1.02313 0.99190 0.93064 1.21492 0.98331 0.92403 1.02476 1.21619 0.96742 1.02153 0.95504 1.21494 1.03463 0.92495 0.97144 1.21999 0.94133 0.98844 1.01963 1.22842 0.95573 0.87973 0.97256 0.93209 0.91861 0.90978 0.91309 0.77574 0.87303 0.91814 0.92065 0.90641 0.90305 0.89846 0.91912 0.90594 0.89983 0.91510 0.90911 0.79109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.90 7.19 127.77 0.92 5.82 16 2 N -0.45 -24.71 3.02 -662.71 -2.00 -26.72 16 3 C -0.36 -21.15 9.32 84.06 0.78 -20.36 16 4 H 0.07 4.76 7.40 -2.91 -0.02 4.73 16 5 C 0.01 0.32 4.70 84.93 0.40 0.71 16 6 N -0.88 -47.07 11.26 21.67 0.24 -46.83 16 7 Si 0.98 42.65 29.64 68.60 2.03 44.68 16 8 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 C 0.50 27.23 7.61 86.64 0.66 27.89 16 12 O -0.65 -39.38 16.57 -4.11 -0.07 -39.45 16 13 C -0.29 -12.44 5.83 -20.15 -0.12 -12.56 16 14 C 0.06 2.27 9.76 85.66 0.84 3.11 16 15 N -0.31 -10.91 12.50 -56.25 -0.70 -11.61 16 16 N -0.35 -10.61 3.50 -325.69 -1.14 -11.75 16 17 C 0.16 3.23 3.18 44.99 0.14 3.37 16 18 C -0.13 -2.26 5.53 30.60 0.17 -2.09 16 19 C -0.11 -1.26 5.92 30.60 0.18 -1.08 16 20 C -0.12 -1.24 5.92 30.60 0.18 -1.06 16 21 C -0.11 -1.21 5.93 30.61 0.18 -1.03 16 22 C -0.13 -2.24 4.84 30.61 0.15 -2.09 16 23 C 0.12 4.08 10.44 84.29 0.88 4.96 16 24 H 0.05 2.27 7.33 -2.39 -0.02 2.25 16 25 H 0.06 3.03 6.40 -2.39 -0.02 3.02 16 26 H 0.07 2.84 5.21 -2.39 -0.01 2.83 16 27 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 28 H 0.21 7.28 4.88 -2.91 -0.01 7.27 16 29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.30 7.13 -2.39 -0.02 1.28 16 40 H 0.19 6.05 7.23 -2.91 -0.02 6.02 16 Total: -1.00 -72.57 319.25 4.76 -67.81 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.04 Total: 18.27 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.36 Total: 5.59 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -3.60 Total: -96.90 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.07 Total: -39.45 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -72.57 4.76 -67.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321707975.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.226 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds