Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 C 1.50702 * 109.47273 * 240.00016 * 2 1 3 5 5 H 1.08003 * 119.99930 * 245.60441 * 4 2 1 6 6 C 1.37870 * 119.99934 * 65.60449 * 4 2 1 7 7 N 1.31521 * 120.00168 * 198.24787 * 6 4 2 8 8 Si 1.86804 * 120.00327 * 18.52253 * 6 4 2 9 9 H 1.48499 * 109.47129 * 179.72420 * 8 6 4 10 10 H 1.48498 * 109.46853 * 299.72574 * 8 6 4 11 11 H 1.48501 * 109.46758 * 59.72474 * 8 6 4 12 12 N 1.46900 * 109.47046 * 120.00083 * 2 1 3 13 13 C 1.46901 * 110.99775 * 58.95273 * 12 2 1 14 14 C 1.46901 * 110.99806 * 295.00267 * 12 2 1 15 15 Si 1.86303 * 109.47081 * 206.04321 * 14 12 2 16 16 C 1.86302 * 109.47089 * 63.13045 * 15 14 12 17 17 C 1.86296 * 109.47225 * 183.13154 * 15 14 12 18 18 C 1.86804 * 109.47012 * 303.13160 * 15 14 12 19 19 C 1.38239 * 120.00009 * 269.72913 * 18 15 14 20 20 C 1.38231 * 119.99919 * 179.76492 * 19 18 15 21 21 C 1.38242 * 119.99909 * 0.50751 * 20 19 18 22 22 C 1.38237 * 119.99792 * 359.74322 * 21 20 19 23 23 C 1.38232 * 120.00200 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47238 * 293.24272 * 1 2 3 25 25 H 1.09009 * 109.46784 * 53.24446 * 1 2 3 26 26 H 1.09000 * 109.47147 * 173.23961 * 1 2 3 27 27 H 0.97002 * 119.99454 * 355.24377 * 7 6 4 28 28 H 1.08994 * 109.47146 * 65.31313 * 13 12 2 29 29 H 1.09000 * 109.46747 * 185.31118 * 13 12 2 30 30 H 1.08994 * 109.47369 * 305.30414 * 13 12 2 31 31 H 1.09006 * 109.46939 * 326.03864 * 14 12 2 32 32 H 1.08996 * 109.47433 * 86.04157 * 14 12 2 33 33 H 1.08995 * 109.47040 * 65.05535 * 16 15 14 34 34 H 1.09002 * 109.46677 * 185.05576 * 16 15 14 35 35 H 1.08996 * 109.47032 * 305.04912 * 16 15 14 36 36 H 1.08999 * 109.46997 * 59.99879 * 17 15 14 37 37 H 1.09002 * 109.46938 * 179.97438 * 17 15 14 38 38 H 1.09003 * 109.47307 * 299.99844 * 17 15 14 39 39 H 1.08000 * 119.99713 * 359.97438 * 19 18 15 40 40 H 1.07999 * 120.00188 * 180.22644 * 20 19 18 41 41 H 1.07992 * 119.99423 * 179.72678 * 21 20 19 42 42 H 1.07995 * 119.99533 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.99858 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5767 -1.6383 -1.1339 6 6 1.7972 -0.1758 -2.4794 7 7 1.9017 -0.9335 -3.5493 8 14 1.3377 1.6265 -2.6526 9 1 1.1456 1.9525 -4.0886 10 1 0.0775 1.8893 -1.9124 11 1 2.4248 2.4703 -2.0945 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6486 0.0391 2.4180 15 14 2.8672 -0.3514 3.7721 16 6 4.5601 0.2470 3.2756 17 6 2.3434 0.5010 5.3437 18 6 2.9166 -2.1977 4.0518 19 6 2.0664 -2.7802 4.9732 20 6 2.0997 -4.1471 5.1766 21 6 2.9903 -4.9302 4.4663 22 6 3.8441 -4.3469 3.5487 23 6 3.8075 -2.9807 3.3418 24 1 -0.3634 0.4055 0.9442 25 1 -0.3633 0.6150 -0.8234 26 1 -0.3633 -1.0205 -0.1210 27 1 2.2109 -1.8492 -3.4668 28 1 1.9526 -2.6405 0.4156 29 1 1.8266 -2.5361 2.1879 30 1 0.4410 -2.0783 1.1689 31 1 1.6604 1.1103 2.2165 32 1 0.6487 -0.2606 2.7316 33 1 4.5534 1.3343 3.1997 34 1 5.2886 -0.0603 4.0260 35 1 4.8290 -0.1829 2.3108 36 1 1.3529 0.1508 5.6341 37 1 3.0561 0.2721 6.1360 38 1 2.3146 1.5783 5.1805 39 1 1.3740 -2.1678 5.5316 40 1 1.4330 -4.6027 5.8938 41 1 3.0193 -5.9975 4.6285 42 1 4.5401 -4.9587 2.9941 43 1 4.4748 -2.5250 2.6252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323972160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = -2.653183 kcal Electronic energy + Delta-G solvation = -19886.331038 eV Core-core repulsion = 17167.637188 eV Total energy + Delta-G solvation = -2718.693850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.156 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.71839 -37.05184 -32.56039 -30.75171 -30.61325 -29.40473 -28.24356 -27.31151 -26.43723 -24.84637 -22.80027 -22.18762 -21.90055 -18.99324 -17.21406 -16.97172 -15.12253 -14.91023 -14.54019 -14.02563 -13.99516 -13.49099 -13.30487 -13.24619 -12.95939 -12.72880 -12.60490 -12.43956 -12.18205 -12.14392 -11.87735 -11.67914 -11.42744 -11.31887 -10.90810 -10.76266 -10.67862 -10.35699 -9.88744 -9.82568 -9.68934 -9.67268 -9.51340 -8.85156 -8.70255 -8.51695 -8.05322 -7.05011 -6.37215 -3.93972 1.45372 1.61852 2.84829 3.01872 3.14676 3.41093 3.46995 3.63972 3.78601 4.07305 4.54962 5.08432 5.14960 5.21145 5.26836 5.36956 5.59613 5.64553 5.66878 5.76260 5.91249 5.92115 6.02463 6.09269 6.22718 6.22965 6.33648 6.36690 6.49456 6.49885 6.52293 6.60220 6.65909 6.73939 6.79297 6.80461 6.86587 7.09339 7.22308 7.41590 7.83318 8.16687 8.43585 8.54580 9.07404 9.72436 11.03373 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.005550 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.260371 B = 5043.439061 C = 5665.370463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.180 3.820 3 H 0.029 0.971 4 C -0.582 4.582 5 H 0.063 0.937 6 C 0.028 3.972 7 N -0.911 5.911 8 Si 1.044 2.956 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.283 1.283 12 N -0.500 5.500 13 C 0.022 3.978 14 C -0.240 4.240 15 Si 1.078 2.922 16 C -0.438 4.438 17 C -0.450 4.450 18 C -0.356 4.356 19 C -0.095 4.095 20 C -0.138 4.138 21 C -0.116 4.116 22 C -0.135 4.135 23 C -0.072 4.072 24 H 0.022 0.978 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.266 0.734 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 -1.348 18.866 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.073 3.927 3 H 0.047 0.953 4 C -0.621 4.621 5 H 0.081 0.919 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.873 3.127 9 H -0.214 1.214 10 H -0.204 1.204 11 H -0.209 1.209 12 N -0.223 5.223 13 C -0.126 4.126 14 C -0.416 4.416 15 Si 1.266 2.734 16 C -0.546 4.546 17 C -0.557 4.557 18 C -0.398 4.398 19 C -0.113 4.113 20 C -0.156 4.156 21 C -0.134 4.134 22 C -0.153 4.153 23 C -0.090 4.090 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.832 -0.272 17.708 17.805 hybrid contribution -0.677 -1.417 0.998 1.861 sum 1.155 -1.689 18.707 18.818 Atomic orbital electron populations 1.22842 1.01727 1.00957 0.98868 1.19754 0.89001 0.94640 0.89353 0.95312 1.21981 1.39490 1.10121 0.90481 0.91892 1.25649 0.94894 1.04903 0.92228 1.70870 1.42798 1.09373 1.31570 0.84075 0.76930 0.75912 0.75780 1.21361 1.20358 1.20943 1.62403 1.57814 1.01529 1.00570 1.22522 0.97382 0.91179 1.01559 1.27234 1.07165 1.01951 1.05286 0.78064 0.68412 0.62237 0.64680 1.25987 1.16825 1.05732 1.06104 1.26170 1.05394 1.07916 1.16240 1.27301 0.97608 1.16895 0.97995 1.21037 0.98221 0.94561 0.97501 1.21137 0.99493 0.94473 1.00518 1.21101 0.96275 0.99259 0.96809 1.21235 0.99709 0.95584 0.98732 1.21136 0.97282 0.93402 0.97200 0.95926 0.92813 0.93413 0.92413 0.91437 0.92105 0.96667 0.91015 0.94882 0.91486 0.92172 0.89861 0.91484 0.91330 0.91087 0.86743 0.86969 0.86873 0.86663 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.21 8.15 37.16 0.30 -3.91 16 2 C 0.18 4.32 1.85 -68.86 -0.13 4.19 16 3 H 0.03 0.71 6.57 -51.93 -0.34 0.36 16 4 C -0.58 -16.30 8.36 -34.44 -0.29 -16.59 16 5 H 0.06 1.90 6.80 -52.48 -0.36 1.54 16 6 C 0.03 0.80 5.34 -17.82 -0.10 0.71 16 7 N -0.91 -28.15 13.70 55.43 0.76 -27.40 16 8 Si 1.04 25.48 26.47 -169.99 -4.50 20.98 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.29 5.51 56.52 0.31 -5.98 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.50 -10.18 4.15 -170.70 -0.71 -10.89 16 13 C 0.02 0.43 8.61 60.07 0.52 0.95 16 14 C -0.24 -3.92 3.33 60.07 0.20 -3.72 16 15 Si 1.08 12.96 10.97 -169.99 -1.87 11.10 16 16 C -0.44 -5.52 8.51 101.05 0.86 -4.66 16 17 C -0.45 -4.48 8.52 101.05 0.86 -3.62 16 18 C -0.36 -4.63 2.85 -39.58 -0.11 -4.74 16 19 C -0.10 -1.16 9.29 -39.58 -0.37 -1.53 16 20 C -0.14 -1.64 10.05 -39.58 -0.40 -2.04 16 21 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 22 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 23 C -0.07 -0.99 8.00 -39.58 -0.32 -1.31 16 24 H 0.02 0.45 6.86 -51.93 -0.36 0.09 16 25 H 0.05 1.26 4.89 -51.92 -0.25 1.00 16 26 H 0.05 1.11 6.65 -51.93 -0.35 0.77 16 27 H 0.27 8.21 8.73 -40.82 -0.36 7.85 16 28 H 0.07 1.50 6.61 -51.93 -0.34 1.16 16 29 H 0.06 1.05 3.84 -51.93 -0.20 0.85 16 30 H 0.01 0.31 6.16 -51.93 -0.32 -0.01 16 31 H 0.07 1.16 7.52 -51.93 -0.39 0.77 16 32 H 0.03 0.53 7.26 -51.93 -0.38 0.15 16 33 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 34 H 0.06 0.66 7.96 -51.93 -0.41 0.25 16 35 H 0.08 1.20 7.92 -51.93 -0.41 0.79 16 36 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 37 H 0.07 0.63 7.96 -51.93 -0.41 0.21 16 38 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 39 H 0.11 1.17 7.42 -52.49 -0.39 0.78 16 40 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.71 7.65 -52.48 -0.40 1.31 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -31.16 336.55 -8.05 -39.21 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.05 Total: 2.14 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 0.24 Total: -40.22 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.05 Total: -38.28 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: -6.37 Total: 32.08 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.16 -8.05 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323972160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.561 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds