Wall clock time and date at job start Mon Mar 30 2020 02:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 C 1.50702 * 109.47273 * 240.00016 * 2 1 3 5 5 H 1.08003 * 119.99930 * 245.60441 * 4 2 1 6 6 C 1.37870 * 119.99934 * 65.60449 * 4 2 1 7 7 N 1.31521 * 120.00168 * 198.24787 * 6 4 2 8 8 Si 1.86804 * 120.00327 * 18.52253 * 6 4 2 9 9 H 1.48499 * 109.47129 * 179.72420 * 8 6 4 10 10 H 1.48498 * 109.46853 * 299.72574 * 8 6 4 11 11 H 1.48501 * 109.46758 * 59.72474 * 8 6 4 12 12 N 1.46900 * 109.47046 * 120.00083 * 2 1 3 13 13 C 1.46901 * 110.99775 * 58.95273 * 12 2 1 14 14 C 1.46901 * 110.99806 * 295.00267 * 12 2 1 15 15 Si 1.86303 * 109.47081 * 206.04321 * 14 12 2 16 16 C 1.86302 * 109.47089 * 63.13045 * 15 14 12 17 17 C 1.86296 * 109.47225 * 183.13154 * 15 14 12 18 18 C 1.86804 * 109.47012 * 303.13160 * 15 14 12 19 19 C 1.38239 * 120.00009 * 269.72913 * 18 15 14 20 20 C 1.38231 * 119.99919 * 179.76492 * 19 18 15 21 21 C 1.38242 * 119.99909 * 0.50751 * 20 19 18 22 22 C 1.38237 * 119.99792 * 359.74322 * 21 20 19 23 23 C 1.38232 * 120.00200 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47238 * 293.24272 * 1 2 3 25 25 H 1.09009 * 109.46784 * 53.24446 * 1 2 3 26 26 H 1.09000 * 109.47147 * 173.23961 * 1 2 3 27 27 H 0.97002 * 119.99454 * 355.24377 * 7 6 4 28 28 H 1.08994 * 109.47146 * 65.31313 * 13 12 2 29 29 H 1.09000 * 109.46747 * 185.31118 * 13 12 2 30 30 H 1.08994 * 109.47369 * 305.30414 * 13 12 2 31 31 H 1.09006 * 109.46939 * 326.03864 * 14 12 2 32 32 H 1.08996 * 109.47433 * 86.04157 * 14 12 2 33 33 H 1.08995 * 109.47040 * 65.05535 * 16 15 14 34 34 H 1.09002 * 109.46677 * 185.05576 * 16 15 14 35 35 H 1.08996 * 109.47032 * 305.04912 * 16 15 14 36 36 H 1.08999 * 109.46997 * 59.99879 * 17 15 14 37 37 H 1.09002 * 109.46938 * 179.97438 * 17 15 14 38 38 H 1.09003 * 109.47307 * 299.99844 * 17 15 14 39 39 H 1.08000 * 119.99713 * 359.97438 * 19 18 15 40 40 H 1.07999 * 120.00188 * 180.22644 * 20 19 18 41 41 H 1.07992 * 119.99423 * 179.72678 * 21 20 19 42 42 H 1.07995 * 119.99533 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.99858 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5767 -1.6383 -1.1339 6 6 1.7972 -0.1758 -2.4794 7 7 1.9017 -0.9335 -3.5493 8 14 1.3377 1.6265 -2.6526 9 1 1.1456 1.9525 -4.0886 10 1 0.0775 1.8893 -1.9124 11 1 2.4248 2.4703 -2.0945 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6486 0.0391 2.4180 15 14 2.8672 -0.3514 3.7721 16 6 4.5601 0.2470 3.2756 17 6 2.3434 0.5010 5.3437 18 6 2.9166 -2.1977 4.0518 19 6 2.0664 -2.7802 4.9732 20 6 2.0997 -4.1471 5.1766 21 6 2.9903 -4.9302 4.4663 22 6 3.8441 -4.3469 3.5487 23 6 3.8075 -2.9807 3.3418 24 1 -0.3634 0.4055 0.9442 25 1 -0.3633 0.6150 -0.8234 26 1 -0.3633 -1.0205 -0.1210 27 1 2.2109 -1.8492 -3.4668 28 1 1.9526 -2.6405 0.4156 29 1 1.8266 -2.5361 2.1879 30 1 0.4410 -2.0783 1.1689 31 1 1.6604 1.1103 2.2165 32 1 0.6487 -0.2606 2.7316 33 1 4.5534 1.3343 3.1997 34 1 5.2886 -0.0603 4.0260 35 1 4.8290 -0.1829 2.3108 36 1 1.3529 0.1508 5.6341 37 1 3.0561 0.2721 6.1360 38 1 2.3146 1.5783 5.1805 39 1 1.3740 -2.1678 5.5316 40 1 1.4330 -4.6027 5.8938 41 1 3.0193 -5.9975 4.6285 42 1 4.5401 -4.9587 2.9941 43 1 4.4748 -2.5250 2.6252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323972160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:54 Heat of formation + Delta-G solvation = -18.700114 kcal Electronic energy + Delta-G solvation = -19887.026886 eV Core-core repulsion = 17167.637188 eV Total energy + Delta-G solvation = -2719.389697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.156 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.67630 -38.76625 -34.70859 -31.76523 -31.64429 -31.14287 -29.13942 -28.20504 -27.92429 -26.85354 -24.55806 -23.13324 -22.85291 -20.89584 -19.34354 -17.90475 -16.84207 -15.91194 -15.77519 -15.63499 -15.46274 -15.22901 -14.36715 -14.26481 -14.16402 -14.14095 -13.81166 -13.64645 -13.44003 -13.27350 -13.18066 -13.01609 -12.99679 -12.61245 -12.39776 -12.34149 -12.14183 -11.82389 -11.72625 -11.59824 -11.02257 -10.86650 -10.70674 -10.61303 -10.27063 -9.66512 -9.56741 -8.69309 -8.63365 -6.26459 0.49188 0.65447 1.44065 1.53129 1.71193 1.88195 2.04614 2.24658 2.50869 2.79450 3.10700 3.11832 3.63161 4.19996 4.27222 4.37251 4.47756 4.52075 4.60491 4.70902 4.75000 4.77048 4.81761 4.90439 4.95587 4.97368 4.98915 4.99628 5.09563 5.15768 5.17190 5.26529 5.29046 5.56321 5.64837 5.69354 5.70959 5.76142 5.82160 5.89227 6.10259 6.28880 6.34531 6.70826 6.80163 7.49817 8.69770 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.005550 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.260371 B = 5043.439061 C = 5665.370463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.177 3.823 3 H 0.033 0.967 4 C -0.580 4.580 5 H 0.023 0.977 6 C -0.026 4.026 7 N -0.944 5.944 8 Si 1.082 2.918 9 H -0.292 1.292 10 H -0.246 1.246 11 H -0.263 1.263 12 N -0.509 5.509 13 C 0.032 3.968 14 C -0.269 4.269 15 Si 1.131 2.869 16 C -0.452 4.452 17 C -0.436 4.436 18 C -0.373 4.373 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.123 4.123 22 C -0.152 4.152 23 C -0.095 4.095 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.248 0.752 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.008 0.992 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 0.328 22.410 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.068 3.932 3 H 0.051 0.949 4 C -0.619 4.619 5 H 0.041 0.959 6 C -0.223 4.223 7 N -0.581 5.581 8 Si 0.904 3.096 9 H -0.218 1.218 10 H -0.171 1.171 11 H -0.188 1.188 12 N -0.231 5.231 13 C -0.116 4.116 14 C -0.440 4.440 15 Si 1.315 2.685 16 C -0.559 4.559 17 C -0.547 4.547 18 C -0.414 4.414 19 C -0.118 4.118 20 C -0.162 4.162 21 C -0.141 4.141 22 C -0.171 4.171 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.026 0.974 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.663 1.380 21.235 21.290 hybrid contribution -0.256 -2.069 -0.069 2.086 sum 0.407 -0.689 21.166 21.181 Atomic orbital electron populations 1.22691 1.00488 1.00142 1.00271 1.19660 0.89806 0.94385 0.89341 0.94949 1.22185 1.38199 1.08711 0.92756 0.95906 1.27101 0.94685 1.08485 0.92020 1.71007 1.45525 1.08859 1.32738 0.83612 0.78740 0.71153 0.76063 1.21833 1.17069 1.18808 1.62342 1.58011 1.01591 1.01182 1.22412 0.96483 0.91185 1.01504 1.27877 1.09766 1.01741 1.04635 0.77317 0.65540 0.61457 0.64146 1.26158 1.18587 1.06106 1.05039 1.25951 1.06453 1.08092 1.14188 1.27595 0.97757 1.17727 0.98348 1.21409 0.98119 0.95146 0.97127 1.21523 0.99434 0.94634 1.00581 1.21409 0.95900 1.00516 0.96301 1.21443 1.00513 0.95603 0.99494 1.21199 0.98124 0.94099 0.97855 0.92852 0.93338 0.94956 0.94276 0.95218 0.89249 0.97358 0.90649 0.94217 0.90880 0.90722 0.92708 0.90140 0.89782 0.90039 0.84091 0.84466 0.84923 0.86198 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.83 8.15 71.98 0.59 -7.25 16 2 C 0.18 8.44 1.85 44.17 0.08 8.53 16 3 H 0.03 1.54 6.57 -2.39 -0.02 1.53 16 4 C -0.58 -33.71 8.36 25.60 0.21 -33.50 16 5 H 0.02 1.47 6.80 -2.91 -0.02 1.45 16 6 C -0.03 -1.54 5.34 84.65 0.45 -1.08 16 7 N -0.94 -60.78 13.70 21.45 0.29 -60.49 16 8 Si 1.08 51.00 26.47 68.60 1.82 52.81 16 9 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 10 H -0.25 -10.32 5.51 99.48 0.55 -9.77 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 N -0.51 -20.71 4.15 -693.99 -2.88 -23.59 16 13 C 0.03 1.32 8.61 127.69 1.10 2.42 16 14 C -0.27 -8.23 3.33 127.69 0.43 -7.80 16 15 Si 1.13 24.31 10.97 68.60 0.75 25.07 16 16 C -0.45 -10.87 8.51 113.37 0.96 -9.91 16 17 C -0.44 -6.50 8.52 113.37 0.97 -5.54 16 18 C -0.37 -9.04 2.85 22.27 0.06 -8.97 16 19 C -0.10 -2.13 9.29 22.27 0.21 -1.92 16 20 C -0.14 -3.01 10.05 22.27 0.22 -2.78 16 21 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 22 C -0.15 -3.94 10.05 22.27 0.22 -3.71 16 23 C -0.09 -2.61 8.00 22.27 0.18 -2.44 16 24 H 0.05 2.01 6.86 -2.39 -0.02 1.99 16 25 H 0.05 2.17 4.89 -2.38 -0.01 2.16 16 26 H 0.03 1.49 6.65 -2.39 -0.02 1.47 16 27 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 28 H 0.03 1.40 6.61 -2.39 -0.02 1.38 16 29 H 0.09 3.09 3.84 -2.39 -0.01 3.09 16 30 H 0.01 0.33 6.16 -2.39 -0.01 0.32 16 31 H 0.07 2.23 7.52 -2.38 -0.02 2.21 16 32 H 0.04 1.15 7.26 -2.39 -0.02 1.13 16 33 H 0.07 1.63 7.96 -2.39 -0.02 1.61 16 34 H 0.07 1.54 7.96 -2.39 -0.02 1.52 16 35 H 0.05 1.62 7.92 -2.39 -0.02 1.60 16 36 H 0.08 1.04 7.68 -2.39 -0.02 1.03 16 37 H 0.08 1.08 7.96 -2.39 -0.02 1.06 16 38 H 0.08 1.11 7.96 -2.39 -0.02 1.09 16 39 H 0.14 2.20 7.42 -2.91 -0.02 2.18 16 40 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 43 H 0.11 3.24 7.65 -2.91 -0.02 3.21 16 Total: -1.00 -70.36 336.55 6.66 -63.70 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.77 Total: 19.01 kcal Atomic # 6 Polarization: -82.42 SS G_CDS: 5.91 Total: -76.51 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -2.59 Total: -84.07 kcal Atomic # 14 Polarization: 75.31 SS G_CDS: 2.57 Total: 77.88 kcal Total: -70.36 6.66 -63.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323972160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.997 kcal (2) G-P(sol) polarization free energy of solvation -70.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds