Wall clock time and date at job start Mon Mar 30 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47138 * 2 1 4 4 C 1.50699 * 109.47079 * 120.00080 * 2 1 3 5 5 H 1.07996 * 120.00287 * 119.99742 * 4 2 1 6 6 C 1.37878 * 119.99811 * 299.99655 * 4 2 1 7 7 N 1.31515 * 119.99896 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00007 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47152 * 90.00044 * 8 6 4 10 10 H 1.48499 * 109.47138 * 209.99997 * 8 6 4 11 11 H 1.48497 * 109.47316 * 329.99981 * 8 6 4 12 12 N 1.46901 * 109.46767 * 239.99935 * 2 1 3 13 13 C 1.46902 * 110.99970 * 187.18958 * 12 2 1 14 14 C 1.46901 * 111.00507 * 63.23513 * 12 2 1 15 15 Si 1.86299 * 109.47161 * 209.59281 * 14 12 2 16 16 C 1.86293 * 109.47167 * 53.66475 * 15 14 12 17 17 C 1.86298 * 109.47113 * 293.65876 * 15 14 12 18 18 C 1.86803 * 109.46791 * 173.66287 * 15 14 12 19 19 C 1.38236 * 120.00145 * 269.72349 * 18 15 14 20 20 C 1.38231 * 120.00087 * 180.32645 * 19 18 15 21 21 C 1.38231 * 120.00157 * 359.95114 * 20 19 18 22 22 C 1.38236 * 119.99994 * 0.02562 * 21 20 19 23 23 C 1.38231 * 120.00042 * 90.00109 * 18 15 14 24 24 H 1.09000 * 109.46969 * 64.54905 * 1 2 3 25 25 H 1.09000 * 109.47032 * 184.55360 * 1 2 3 26 26 H 1.08992 * 109.46814 * 304.55554 * 1 2 3 27 27 H 0.96999 * 119.99703 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.47109 * 292.15853 * 13 12 2 29 29 H 1.09004 * 109.47075 * 52.15552 * 13 12 2 30 30 H 1.08999 * 109.47687 * 172.15248 * 13 12 2 31 31 H 1.09000 * 109.46604 * 89.59062 * 14 12 2 32 32 H 1.09001 * 109.46533 * 329.59585 * 14 12 2 33 33 H 1.09003 * 109.47009 * 180.02562 * 16 15 14 34 34 H 1.09006 * 109.47253 * 299.99644 * 16 15 14 35 35 H 1.08998 * 109.47593 * 59.99406 * 16 15 14 36 36 H 1.08997 * 109.47548 * 306.82411 * 17 15 14 37 37 H 1.09010 * 109.46696 * 66.81726 * 17 15 14 38 38 H 1.08993 * 109.47088 * 186.81500 * 17 15 14 39 39 H 1.08000 * 119.99701 * 0.27775 * 19 18 15 40 40 H 1.07999 * 119.99734 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.99776 * 180.02562 * 21 20 19 42 42 H 1.07995 * 120.00192 * 179.97438 * 22 21 20 43 43 H 1.08009 * 120.00185 * 359.72010 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6998 10 1 0.9760 1.9952 3.9067 11 1 0.8471 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1995 13 6 3.4780 -0.8626 -1.1508 14 6 1.6129 0.0167 -2.4199 15 14 1.4184 -1.2052 -3.8127 16 6 0.2613 -2.5672 -3.2868 17 6 3.0803 -1.9316 -4.2381 18 6 0.7171 -0.3360 -5.3101 19 6 -0.6515 -0.2694 -5.4928 20 6 -1.1703 0.3679 -6.6043 21 6 -0.3205 0.9396 -7.5327 22 6 1.0481 0.8735 -7.3498 23 6 1.5668 0.2357 -6.2384 24 1 -0.3633 0.4416 -0.9279 25 1 -0.3633 -1.0244 0.0816 26 1 -0.3633 0.5829 0.8463 27 1 1.9035 -0.5277 4.4375 28 1 3.9603 0.1115 -1.2326 29 1 3.7581 -1.3285 -0.2060 30 1 3.7977 -1.4970 -1.9775 31 1 2.3740 0.7509 -2.6842 32 1 0.6638 0.5238 -2.2461 33 1 0.1479 -3.2824 -4.1015 34 1 0.6706 -3.0745 -2.4130 35 1 -0.7110 -2.1422 -3.0378 36 1 3.7906 -1.1271 -4.4284 37 1 3.4347 -2.5398 -3.4057 38 1 2.9879 -2.5531 -5.1287 39 1 -1.3154 -0.7161 -4.7674 40 1 -2.2395 0.4195 -6.7472 41 1 -0.7259 1.4379 -8.4009 42 1 1.7120 1.3198 -8.0753 43 1 2.6362 0.1838 -6.0958 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323972161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:57 Heat of formation + Delta-G solvation = 4.887797 kcal Electronic energy + Delta-G solvation = -19481.504487 eV Core-core repulsion = 16763.137638 eV Total energy + Delta-G solvation = -2718.366849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.156 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.80321 -36.95867 -32.56972 -30.91543 -30.69383 -30.15498 -27.96402 -27.45403 -26.83778 -24.35999 -22.98043 -22.35745 -22.07910 -19.31929 -17.11932 -16.72383 -15.26817 -15.12184 -14.73220 -14.23902 -14.11241 -13.48026 -13.40874 -13.21513 -12.93765 -12.83311 -12.60254 -12.49492 -12.22699 -12.13452 -12.11234 -11.71888 -11.68726 -11.09013 -10.92404 -10.85194 -10.57873 -10.43463 -10.04601 -9.83632 -9.79399 -9.61132 -9.38906 -8.94800 -8.88986 -8.67579 -8.52475 -7.13033 -6.04036 -4.01878 1.28688 1.43343 2.89146 3.06505 3.09768 3.28990 3.38999 3.40858 3.83394 3.90825 4.42920 4.93562 4.97746 5.08409 5.11434 5.30999 5.45264 5.56490 5.76399 5.81805 5.88431 5.92528 5.97526 6.04650 6.08598 6.16017 6.29994 6.38662 6.42880 6.47568 6.50803 6.52777 6.56776 6.62737 6.73817 6.83686 6.91659 7.02713 7.05313 7.37178 7.64521 7.98953 8.18352 8.69611 9.02399 9.59011 11.08612 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.004598 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.587353 B = 6088.370636 C = 6565.642743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.175 3.825 3 H -0.005 1.005 4 C -0.505 4.505 5 H 0.085 0.915 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.299 1.299 11 H -0.270 1.270 12 N -0.503 5.503 13 C 0.019 3.981 14 C -0.245 4.245 15 Si 1.077 2.923 16 C -0.433 4.433 17 C -0.444 4.444 18 C -0.367 4.367 19 C -0.088 4.088 20 C -0.135 4.135 21 C -0.117 4.117 22 C -0.136 4.136 23 C -0.090 4.090 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.263 0.737 28 H 0.010 0.990 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 1.007 -20.565 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.068 3.932 3 H 0.013 0.987 4 C -0.543 4.543 5 H 0.103 0.897 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.196 1.196 12 N -0.227 5.227 13 C -0.129 4.129 14 C -0.421 4.421 15 Si 1.266 2.734 16 C -0.542 4.542 17 C -0.552 4.552 18 C -0.408 4.408 19 C -0.105 4.105 20 C -0.153 4.153 21 C -0.135 4.135 22 C -0.154 4.154 23 C -0.108 4.108 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.215 0.606 -20.402 20.663 hybrid contribution -0.391 1.960 0.175 2.006 sum -3.606 2.566 -20.227 20.705 Atomic orbital electron populations 1.22210 0.98763 1.01369 0.97984 1.19761 0.91433 0.92717 0.89331 0.98747 1.21074 1.31713 1.13514 0.88036 0.89715 1.24920 0.95826 0.96536 0.95877 1.69883 1.45908 1.40363 0.97842 0.86899 0.80877 0.83997 0.76637 1.20572 1.22630 1.19551 1.62079 1.11403 1.48573 1.00693 1.22573 0.88187 0.99151 1.02979 1.27351 1.02953 1.06370 1.05427 0.77989 0.66920 0.67006 0.61511 1.25947 1.10171 1.12375 1.05703 1.26207 1.17118 1.06731 1.05119 1.27594 0.97469 1.04714 1.11014 1.21147 0.95551 0.97152 0.96700 1.21233 0.99415 0.99294 0.95404 1.21129 0.93825 0.99563 0.99002 1.21215 0.95327 1.00524 0.98377 1.21110 0.99650 0.96210 0.93795 0.94930 0.91975 0.94480 0.92715 0.97120 0.89555 0.92662 0.94821 0.90560 0.92399 0.89623 0.91633 0.91646 0.90048 0.91778 0.86094 0.86615 0.86698 0.86686 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.63 37.16 0.32 -2.91 16 2 C 0.18 4.17 1.64 -68.86 -0.11 4.06 16 3 H -0.01 -0.13 7.20 -51.93 -0.37 -0.50 16 4 C -0.51 -14.00 8.42 -34.44 -0.29 -14.29 16 5 H 0.08 2.51 6.44 -52.49 -0.34 2.17 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 8 Si 0.88 22.24 24.33 -169.99 -4.14 18.11 16 9 H -0.28 -6.82 6.91 56.52 0.39 -6.43 16 10 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 11 H -0.27 -6.61 6.53 56.52 0.37 -6.25 16 12 N -0.50 -10.03 3.98 -170.69 -0.68 -10.71 16 13 C 0.02 0.36 9.03 60.07 0.54 0.91 16 14 C -0.25 -4.01 4.18 60.07 0.25 -3.76 16 15 Si 1.08 13.03 10.91 -169.99 -1.85 11.17 16 16 C -0.43 -5.54 8.53 101.05 0.86 -4.68 16 17 C -0.44 -5.04 7.64 101.05 0.77 -4.27 16 18 C -0.37 -4.35 4.59 -39.58 -0.18 -4.53 16 19 C -0.09 -1.02 9.29 -39.58 -0.37 -1.39 16 20 C -0.14 -1.47 10.05 -39.59 -0.40 -1.87 16 21 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 22 C -0.14 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.09 -1.02 9.29 -39.58 -0.37 -1.38 16 24 H 0.03 0.62 5.97 -51.93 -0.31 0.31 16 25 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.04 0.85 3.40 -51.93 -0.18 0.67 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.01 0.19 7.96 -51.93 -0.41 -0.22 16 29 H 0.09 1.85 5.79 -51.93 -0.30 1.55 16 30 H 0.05 0.86 4.97 -51.93 -0.26 0.60 16 31 H 0.03 0.54 7.55 -51.93 -0.39 0.15 16 32 H 0.08 1.27 5.41 -51.93 -0.28 0.99 16 33 H 0.06 0.64 7.96 -51.93 -0.41 0.23 16 34 H 0.08 1.24 7.96 -51.93 -0.41 0.82 16 35 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 36 H 0.06 0.70 7.96 -51.93 -0.41 0.28 16 37 H 0.08 0.98 6.39 -51.92 -0.33 0.65 16 38 H 0.06 0.64 7.96 -51.93 -0.41 0.23 16 39 H 0.12 1.26 7.42 -52.49 -0.39 0.87 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.11 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.14 7.69 -52.48 -0.40 0.74 16 LS Contribution 336.90 15.07 5.08 5.08 Total: -1.00 -31.14 336.90 -7.57 -38.71 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.89 Total: -0.01 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 0.14 Total: -35.68 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.09 Total: -37.38 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: -5.99 Total: 29.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.14 -7.57 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323972161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.597 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds