Wall clock time and date at job start Mon Mar 30 2020 02:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47138 * 2 1 4 4 C 1.50699 * 109.47079 * 120.00080 * 2 1 3 5 5 H 1.07996 * 120.00287 * 119.99742 * 4 2 1 6 6 C 1.37878 * 119.99811 * 299.99655 * 4 2 1 7 7 N 1.31515 * 119.99896 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00007 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47152 * 90.00044 * 8 6 4 10 10 H 1.48499 * 109.47138 * 209.99997 * 8 6 4 11 11 H 1.48497 * 109.47316 * 329.99981 * 8 6 4 12 12 N 1.46901 * 109.46767 * 239.99935 * 2 1 3 13 13 C 1.46902 * 110.99970 * 187.18958 * 12 2 1 14 14 C 1.46901 * 111.00507 * 63.23513 * 12 2 1 15 15 Si 1.86299 * 109.47161 * 209.59281 * 14 12 2 16 16 C 1.86293 * 109.47167 * 53.66475 * 15 14 12 17 17 C 1.86298 * 109.47113 * 293.65876 * 15 14 12 18 18 C 1.86803 * 109.46791 * 173.66287 * 15 14 12 19 19 C 1.38236 * 120.00145 * 269.72349 * 18 15 14 20 20 C 1.38231 * 120.00087 * 180.32645 * 19 18 15 21 21 C 1.38231 * 120.00157 * 359.95114 * 20 19 18 22 22 C 1.38236 * 119.99994 * 0.02562 * 21 20 19 23 23 C 1.38231 * 120.00042 * 90.00109 * 18 15 14 24 24 H 1.09000 * 109.46969 * 64.54905 * 1 2 3 25 25 H 1.09000 * 109.47032 * 184.55360 * 1 2 3 26 26 H 1.08992 * 109.46814 * 304.55554 * 1 2 3 27 27 H 0.96999 * 119.99703 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.47109 * 292.15853 * 13 12 2 29 29 H 1.09004 * 109.47075 * 52.15552 * 13 12 2 30 30 H 1.08999 * 109.47687 * 172.15248 * 13 12 2 31 31 H 1.09000 * 109.46604 * 89.59062 * 14 12 2 32 32 H 1.09001 * 109.46533 * 329.59585 * 14 12 2 33 33 H 1.09003 * 109.47009 * 180.02562 * 16 15 14 34 34 H 1.09006 * 109.47253 * 299.99644 * 16 15 14 35 35 H 1.08998 * 109.47593 * 59.99406 * 16 15 14 36 36 H 1.08997 * 109.47548 * 306.82411 * 17 15 14 37 37 H 1.09010 * 109.46696 * 66.81726 * 17 15 14 38 38 H 1.08993 * 109.47088 * 186.81500 * 17 15 14 39 39 H 1.08000 * 119.99701 * 0.27775 * 19 18 15 40 40 H 1.07999 * 119.99734 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.99776 * 180.02562 * 21 20 19 42 42 H 1.07995 * 120.00192 * 179.97438 * 22 21 20 43 43 H 1.08009 * 120.00185 * 359.72010 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8728 2.6998 10 1 0.9760 1.9952 3.9067 11 1 0.8471 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1995 13 6 3.4780 -0.8626 -1.1508 14 6 1.6129 0.0167 -2.4199 15 14 1.4184 -1.2052 -3.8127 16 6 0.2613 -2.5672 -3.2868 17 6 3.0803 -1.9316 -4.2381 18 6 0.7171 -0.3360 -5.3101 19 6 -0.6515 -0.2694 -5.4928 20 6 -1.1703 0.3679 -6.6043 21 6 -0.3205 0.9396 -7.5327 22 6 1.0481 0.8735 -7.3498 23 6 1.5668 0.2357 -6.2384 24 1 -0.3633 0.4416 -0.9279 25 1 -0.3633 -1.0244 0.0816 26 1 -0.3633 0.5829 0.8463 27 1 1.9035 -0.5277 4.4375 28 1 3.9603 0.1115 -1.2326 29 1 3.7581 -1.3285 -0.2060 30 1 3.7977 -1.4970 -1.9775 31 1 2.3740 0.7509 -2.6842 32 1 0.6638 0.5238 -2.2461 33 1 0.1479 -3.2824 -4.1015 34 1 0.6706 -3.0745 -2.4130 35 1 -0.7110 -2.1422 -3.0378 36 1 3.7906 -1.1271 -4.4284 37 1 3.4347 -2.5398 -3.4057 38 1 2.9879 -2.5531 -5.1287 39 1 -1.3154 -0.7161 -4.7674 40 1 -2.2395 0.4195 -6.7472 41 1 -0.7259 1.4379 -8.4009 42 1 1.7120 1.3198 -8.0753 43 1 2.6362 0.1838 -6.0958 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323972161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:56 Heat of formation + Delta-G solvation = -11.072163 kcal Electronic energy + Delta-G solvation = -19482.196562 eV Core-core repulsion = 16763.137638 eV Total energy + Delta-G solvation = -2719.058925 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.156 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.57704 -38.65347 -34.65639 -32.03060 -31.67706 -31.48388 -28.91019 -28.80771 -28.08016 -26.23466 -24.64383 -23.13954 -22.88523 -21.12749 -18.83158 -17.88512 -17.14908 -16.04654 -15.84439 -15.70335 -15.50442 -15.02133 -14.69123 -14.32616 -14.18580 -14.14939 -13.77924 -13.68388 -13.48747 -13.29996 -13.14323 -13.11254 -12.75189 -12.61287 -12.55928 -12.37144 -12.06527 -11.85708 -11.82357 -11.44832 -11.15273 -10.79249 -10.70484 -10.63334 -10.55337 -9.68124 -9.64476 -8.71069 -8.26659 -6.28222 0.46519 0.64072 1.27917 1.32699 1.42166 1.96849 2.07270 2.14093 2.31688 2.82448 3.07340 3.08998 3.56869 4.19762 4.28553 4.37324 4.42588 4.54976 4.64764 4.69399 4.71417 4.80786 4.84977 4.87123 4.95973 4.97315 5.01407 5.05008 5.07884 5.15825 5.28737 5.29160 5.33268 5.48329 5.65195 5.68479 5.69966 5.74101 5.76882 5.84605 6.06588 6.28122 6.45581 6.75596 6.81045 7.36721 8.89133 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.004598 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.587353 B = 6088.370636 C = 6565.642743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.174 3.826 3 H -0.022 1.022 4 C -0.504 4.504 5 H 0.052 0.948 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.943 3.057 9 H -0.265 1.265 10 H -0.299 1.299 11 H -0.260 1.260 12 N -0.507 5.507 13 C 0.020 3.980 14 C -0.272 4.272 15 Si 1.137 2.863 16 C -0.446 4.446 17 C -0.448 4.448 18 C -0.376 4.376 19 C -0.104 4.104 20 C -0.147 4.147 21 C -0.123 4.123 22 C -0.146 4.146 23 C -0.102 4.102 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.264 0.736 28 H 0.009 0.991 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 1.892 -23.557 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.066 3.934 3 H -0.005 1.005 4 C -0.542 4.542 5 H 0.070 0.930 6 C -0.183 4.183 7 N -0.589 5.589 8 Si 0.771 3.229 9 H -0.191 1.191 10 H -0.227 1.227 11 H -0.184 1.184 12 N -0.231 5.231 13 C -0.128 4.128 14 C -0.442 4.442 15 Si 1.322 2.678 16 C -0.553 4.553 17 C -0.557 4.557 18 C -0.418 4.418 19 C -0.122 4.122 20 C -0.165 4.165 21 C -0.141 4.141 22 C -0.164 4.164 23 C -0.120 4.120 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.169 1.508 -23.380 23.797 hybrid contribution -0.050 1.670 1.017 1.956 sum -4.219 3.178 -22.363 22.978 Atomic orbital electron populations 1.22123 0.97144 1.01411 0.99363 1.19650 0.92739 0.91395 0.89638 1.00453 1.21359 1.30547 1.12419 0.89918 0.93003 1.25697 0.97399 0.99591 0.95593 1.70023 1.47949 1.42445 0.98439 0.85950 0.79730 0.80529 0.76708 1.19058 1.22692 1.18439 1.62115 1.11703 1.48559 1.00677 1.22578 0.87994 0.99507 1.02735 1.27996 1.02434 1.08533 1.05282 0.76996 0.66989 0.64453 0.59379 1.26090 1.10523 1.13274 1.05442 1.26196 1.16573 1.07233 1.05674 1.27471 0.97747 1.05542 1.11084 1.21382 0.95806 0.97633 0.97408 1.21526 1.00598 0.99100 0.95262 1.21483 0.93935 0.99140 0.99547 1.21544 0.95922 1.00301 0.98625 1.21395 1.00524 0.96144 0.93945 0.91714 0.92288 0.95227 0.92657 0.97229 0.92904 0.88958 0.94616 0.91039 0.90678 0.91711 0.91652 0.90634 0.90893 0.89951 0.85400 0.84943 0.84577 0.84682 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.18 8.63 71.98 0.62 -5.56 16 2 C 0.17 8.33 1.64 44.17 0.07 8.40 16 3 H -0.02 -1.11 7.20 -2.39 -0.02 -1.13 16 4 C -0.50 -28.85 8.42 25.60 0.22 -28.63 16 5 H 0.05 3.24 6.44 -2.91 -0.02 3.22 16 6 C 0.01 0.84 5.45 84.65 0.46 1.30 16 7 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 8 Si 0.94 46.15 24.33 68.60 1.67 47.82 16 9 H -0.26 -12.27 6.91 99.48 0.69 -11.59 16 10 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 11 H -0.26 -12.15 6.53 99.48 0.65 -11.50 16 12 N -0.51 -20.12 3.98 -693.95 -2.76 -22.88 16 13 C 0.02 0.76 9.03 127.69 1.15 1.92 16 14 C -0.27 -8.52 4.18 127.69 0.53 -7.98 16 15 Si 1.14 25.01 10.91 68.60 0.75 25.76 16 16 C -0.45 -10.71 8.53 113.37 0.97 -9.74 16 17 C -0.45 -8.87 7.64 113.37 0.87 -8.01 16 18 C -0.38 -7.94 4.59 22.27 0.10 -7.84 16 19 C -0.10 -2.19 9.29 22.27 0.21 -1.98 16 20 C -0.15 -2.81 10.05 22.27 0.22 -2.58 16 21 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 22 C -0.15 -2.66 10.05 22.27 0.22 -2.44 16 23 C -0.10 -2.01 9.29 22.27 0.21 -1.81 16 24 H 0.06 2.34 5.97 -2.39 -0.01 2.33 16 25 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.03 1.30 3.40 -2.39 -0.01 1.30 16 27 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.01 0.35 7.96 -2.38 -0.02 0.33 16 29 H 0.05 2.36 5.79 -2.39 -0.01 2.35 16 30 H 0.09 2.79 4.97 -2.39 -0.01 2.77 16 31 H 0.04 1.09 7.55 -2.39 -0.02 1.07 16 32 H 0.07 2.27 5.41 -2.39 -0.01 2.26 16 33 H 0.07 1.51 7.96 -2.39 -0.02 1.49 16 34 H 0.06 1.83 7.96 -2.38 -0.02 1.81 16 35 H 0.06 1.54 7.68 -2.39 -0.02 1.52 16 36 H 0.07 1.36 7.96 -2.39 -0.02 1.34 16 37 H 0.07 1.59 6.39 -2.38 -0.02 1.57 16 38 H 0.08 1.37 7.96 -2.39 -0.02 1.35 16 39 H 0.13 2.38 7.42 -2.91 -0.02 2.36 16 40 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.13 2.13 7.69 -2.91 -0.02 2.10 16 Total: -1.00 -68.46 336.90 6.93 -61.53 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.90 Total: 13.97 kcal Atomic # 6 Polarization: -73.00 SS G_CDS: 6.08 Total: -66.92 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.46 Total: -82.16 kcal Atomic # 14 Polarization: 71.16 SS G_CDS: 2.42 Total: 73.58 kcal Total: -68.46 6.93 -61.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323972161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.462 kcal (2) G-P(sol) polarization free energy of solvation -68.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds