Wall clock time and date at job start Mon Mar 30 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47604 * 2 1 4 4 N 1.30524 * 126.34633 * 270.04194 * 3 2 1 5 5 N 1.28596 * 109.67024 * 179.97438 * 4 3 2 6 6 C 1.30516 * 109.67733 * 359.72122 * 5 4 3 7 7 N 1.35493 * 107.30407 * 0.44097 * 6 5 4 8 8 C 1.46506 * 126.98087 * 179.83163 * 7 6 5 9 9 C 1.52997 * 109.47289 * 264.68765 * 8 7 6 10 10 N 1.46896 * 109.47306 * 180.02562 * 9 8 7 11 11 C 1.46899 * 111.00351 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46890 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47095 * 304.99883 * 12 11 10 14 14 C 1.47199 * 109.47141 * 65.00292 * 12 11 10 15 15 N 6.89340 * 96.95838 * 108.59024 * 2 1 3 16 16 C 1.53003 * 109.46569 * 184.99825 * 12 11 10 17 17 C 1.50705 * 109.47005 * 175.00164 * 16 12 11 18 18 H 1.08003 * 119.99733 * 359.97438 * 17 16 12 19 19 C 1.37879 * 120.00030 * 180.02562 * 17 16 12 20 20 N 1.31510 * 119.99688 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99761 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47127 * 90.00461 * 21 19 17 23 23 H 1.48502 * 109.46863 * 209.99712 * 21 19 17 24 24 H 1.48494 * 109.47694 * 330.00205 * 21 19 17 25 25 H 1.08998 * 109.47656 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46609 * 300.00471 * 1 2 3 27 27 H 1.09003 * 109.46720 * 59.99314 * 1 2 3 28 28 H 1.09007 * 109.47125 * 239.99528 * 2 1 3 29 29 H 1.09007 * 109.47198 * 120.00618 * 2 1 3 30 30 H 1.08007 * 126.35319 * 180.29405 * 6 5 4 31 31 H 1.09001 * 109.47060 * 24.69034 * 8 7 6 32 32 H 1.09004 * 109.47073 * 144.68523 * 8 7 6 33 33 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 34 34 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 35 35 H 1.00903 * 111.00189 * 56.03913 * 10 9 8 36 36 H 1.08993 * 109.47142 * 299.99624 * 11 10 9 37 37 H 1.09001 * 109.46897 * 60.00184 * 11 10 9 38 38 H 1.08994 * 109.47345 * 294.99937 * 16 12 11 39 39 H 1.08997 * 109.47293 * 55.00317 * 16 12 11 40 40 H 0.96997 * 119.99752 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2896 2.1503 -1.0513 5 7 2.7001 3.3118 -0.6823 6 6 2.7178 3.3780 0.6211 7 7 2.3004 2.1778 1.0913 8 6 2.1611 1.7811 2.4947 9 6 3.4274 1.0510 2.9465 10 7 3.2875 0.6527 4.3535 11 6 4.4872 -0.0533 4.8227 12 6 4.3045 -0.4505 6.2889 13 1 4.0628 0.4344 6.8777 14 6 3.2093 -1.4278 6.3997 15 7 2.3651 -2.1814 6.4856 16 6 5.5994 -1.0741 6.8134 17 6 5.4614 -1.3529 8.2881 18 1 4.5422 -1.1091 8.7999 19 6 6.5091 -1.9180 8.9838 20 7 6.3887 -2.1608 10.2707 21 14 8.0992 -2.3389 8.0985 22 1 9.0185 -1.1737 8.1514 23 1 8.7395 -3.5048 8.7586 24 1 7.8038 -2.6725 6.6820 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 3.0129 4.2305 1.2148 31 1 2.0142 2.6687 3.1103 32 1 1.3020 1.1187 2.6016 33 1 3.5742 0.1634 2.3310 34 1 4.2864 1.7133 2.8397 35 1 2.4609 0.0904 4.4897 36 1 4.6411 -0.9482 4.2199 37 1 5.3538 0.6013 4.7293 38 1 5.7940 -2.0068 6.2841 39 1 6.4272 -0.3841 6.6501 40 1 7.1256 -2.5587 10.7601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329134331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:22 Heat of formation + Delta-G solvation = 90.010355 kcal Electronic energy + Delta-G solvation = -20475.017386 eV Core-core repulsion = 17325.887688 eV Total energy + Delta-G solvation = -3149.129698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.40043 -38.04945 -36.46061 -34.97287 -34.30186 -33.58854 -31.94767 -29.85969 -29.34306 -26.75082 -24.66153 -23.53590 -22.79133 -22.45079 -21.51111 -20.75689 -17.51105 -17.14908 -16.92434 -16.60087 -16.13141 -15.55493 -15.24201 -14.85942 -14.43636 -14.30685 -13.94519 -13.59618 -13.23674 -13.14815 -12.94325 -12.67835 -12.43807 -12.24369 -12.15860 -11.85672 -11.71715 -11.62198 -11.53035 -11.29841 -10.98282 -10.56704 -10.56016 -10.51214 -10.05479 -9.87314 -9.45455 -9.42829 -8.80306 -8.69520 -6.18647 -4.20130 1.51134 2.09649 2.64356 3.19269 3.28272 3.28847 3.37215 3.41899 3.78095 3.97229 4.15439 4.30649 4.33982 4.38939 4.51320 4.54266 4.76316 4.78414 4.95178 5.01907 5.07020 5.15713 5.20306 5.32175 5.39330 5.41796 5.49410 5.68246 5.73360 5.80550 5.90272 5.96439 6.20224 6.52633 6.62079 6.81165 6.97280 7.02627 7.54037 8.18474 8.32779 8.48621 8.84172 9.40805 10.94381 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.027311 B = 0.003051 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.994245 B = 9175.054300 C = 9601.753430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.040 4.040 3 C 0.179 3.821 4 N -0.297 5.297 5 N -0.300 5.300 6 C 0.152 3.848 7 N -0.469 5.469 8 C 0.104 3.896 9 C 0.044 3.956 10 N -0.686 5.686 11 C 0.066 3.934 12 C 0.017 3.983 13 H 0.118 0.882 14 C 0.236 3.764 15 N -0.465 5.465 16 C -0.004 4.004 17 C -0.531 4.531 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.878 3.122 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.219 0.781 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.342 0.658 36 H 0.039 0.961 37 H 0.094 0.906 38 H 0.024 0.976 39 H 0.035 0.965 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 8.307 -17.756 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.089 4.089 4 N -0.137 5.137 5 N -0.139 5.139 6 C -0.135 4.135 7 N -0.160 5.160 8 C -0.019 4.019 9 C -0.087 4.087 10 N -0.318 5.318 11 C -0.063 4.063 12 C -0.005 4.005 13 H 0.136 0.864 14 C -0.081 4.081 15 N -0.141 5.141 16 C -0.043 4.043 17 C -0.568 4.568 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.705 3.295 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.235 0.765 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.160 0.840 36 H 0.057 0.943 37 H 0.113 0.887 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.184 8.132 -18.658 21.936 hybrid contribution 1.096 -1.132 0.881 1.805 sum -7.088 7.000 -17.777 20.378 Atomic orbital electron populations 1.21750 0.93403 1.02829 1.02616 1.20035 0.96801 0.86435 1.04673 1.24912 1.03162 0.97844 0.82947 1.74256 1.16482 0.99026 1.23932 1.74250 1.17534 1.13040 1.09084 1.26491 1.03053 0.90526 0.93463 1.46290 1.49059 1.12146 1.08536 1.21952 0.99710 1.02924 0.77348 1.22243 0.97384 0.99355 0.89668 1.60465 1.06264 1.48031 1.16999 1.22133 0.92766 0.97000 0.94436 1.19065 0.91299 0.94646 0.95458 0.86417 1.29099 0.93196 0.93649 0.92145 1.81024 1.12993 1.10736 1.09384 1.19633 0.90490 0.96285 0.97900 1.21004 1.02347 1.42204 0.91291 0.90758 1.24993 0.98626 0.94773 0.94684 1.69898 1.32613 1.43161 1.07644 0.86818 0.83839 0.78506 0.80383 1.19934 1.21255 1.18952 0.91066 0.92723 0.91695 0.88178 0.89995 0.76457 0.86943 0.88634 0.94349 0.89647 0.83969 0.94300 0.88745 0.95812 0.94659 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.04 -0.28 6.19 -27.89 -0.17 -0.46 16 3 C 0.18 1.78 7.28 -154.99 -1.13 0.66 16 4 N -0.30 -3.92 12.21 32.79 0.40 -3.52 16 5 N -0.30 -3.87 12.21 29.69 0.36 -3.51 16 6 C 0.15 1.37 12.74 -89.95 -1.15 0.23 16 7 N -0.47 -3.88 2.75 -115.30 -0.32 -4.20 16 8 C 0.10 0.63 6.08 -4.04 -0.02 0.60 16 9 C 0.04 0.32 6.01 -3.83 -0.02 0.30 16 10 N -0.69 -6.39 6.50 -113.79 -0.74 -7.13 16 11 C 0.07 0.76 5.12 -3.82 -0.02 0.74 16 12 C 0.02 0.27 2.42 -93.40 -0.23 0.04 16 13 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 14 C 0.24 4.26 12.97 -20.80 -0.27 3.99 16 15 N -0.46 -9.27 18.53 42.11 0.78 -8.49 16 16 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 17 C -0.53 -13.71 9.15 -34.44 -0.32 -14.02 16 18 H 0.07 2.11 7.84 -52.48 -0.41 1.70 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 21 Si 0.88 19.99 27.47 -169.99 -4.67 15.32 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.49 7.62 -51.93 -0.40 0.10 16 30 H 0.22 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.50 8.02 -51.93 -0.42 0.09 16 33 H 0.04 0.30 7.82 -51.93 -0.41 -0.10 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.34 3.27 7.81 -39.29 -0.31 2.96 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 39 H 0.04 0.65 7.57 -51.93 -0.39 0.26 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 344.73 15.07 5.19 5.19 Total: -1.00 -33.26 344.73 -7.46 -40.73 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.10 Total: -2.01 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.15 Total: -6.78 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 1.26 Total: -52.45 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.26 -7.46 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329134331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.739 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds