Wall clock time and date at job start Mon Mar 30 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47604 * 2 1 4 4 N 1.30524 * 126.34633 * 270.04194 * 3 2 1 5 5 N 1.28596 * 109.67024 * 179.97438 * 4 3 2 6 6 C 1.30516 * 109.67733 * 359.72122 * 5 4 3 7 7 N 1.35493 * 107.30407 * 0.44097 * 6 5 4 8 8 C 1.46506 * 126.98087 * 179.83163 * 7 6 5 9 9 C 1.52997 * 109.47289 * 264.68765 * 8 7 6 10 10 N 1.46896 * 109.47306 * 180.02562 * 9 8 7 11 11 C 1.46899 * 111.00351 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46890 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47095 * 304.99883 * 12 11 10 14 14 C 1.47199 * 109.47141 * 65.00292 * 12 11 10 15 15 N 6.89340 * 96.95838 * 108.59024 * 2 1 3 16 16 C 1.53003 * 109.46569 * 184.99825 * 12 11 10 17 17 C 1.50705 * 109.47005 * 175.00164 * 16 12 11 18 18 H 1.08003 * 119.99733 * 359.97438 * 17 16 12 19 19 C 1.37879 * 120.00030 * 180.02562 * 17 16 12 20 20 N 1.31510 * 119.99688 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99761 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47127 * 90.00461 * 21 19 17 23 23 H 1.48502 * 109.46863 * 209.99712 * 21 19 17 24 24 H 1.48494 * 109.47694 * 330.00205 * 21 19 17 25 25 H 1.08998 * 109.47656 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46609 * 300.00471 * 1 2 3 27 27 H 1.09003 * 109.46720 * 59.99314 * 1 2 3 28 28 H 1.09007 * 109.47125 * 239.99528 * 2 1 3 29 29 H 1.09007 * 109.47198 * 120.00618 * 2 1 3 30 30 H 1.08007 * 126.35319 * 180.29405 * 6 5 4 31 31 H 1.09001 * 109.47060 * 24.69034 * 8 7 6 32 32 H 1.09004 * 109.47073 * 144.68523 * 8 7 6 33 33 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 34 34 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 35 35 H 1.00903 * 111.00189 * 56.03913 * 10 9 8 36 36 H 1.08993 * 109.47142 * 299.99624 * 11 10 9 37 37 H 1.09001 * 109.46897 * 60.00184 * 11 10 9 38 38 H 1.08994 * 109.47345 * 294.99937 * 16 12 11 39 39 H 1.08997 * 109.47293 * 55.00317 * 16 12 11 40 40 H 0.96997 * 119.99752 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2896 2.1503 -1.0513 5 7 2.7001 3.3118 -0.6823 6 6 2.7178 3.3780 0.6211 7 7 2.3004 2.1778 1.0913 8 6 2.1611 1.7811 2.4947 9 6 3.4274 1.0510 2.9465 10 7 3.2875 0.6527 4.3535 11 6 4.4872 -0.0533 4.8227 12 6 4.3045 -0.4505 6.2889 13 1 4.0628 0.4344 6.8777 14 6 3.2093 -1.4278 6.3997 15 7 2.3651 -2.1814 6.4856 16 6 5.5994 -1.0741 6.8134 17 6 5.4614 -1.3529 8.2881 18 1 4.5422 -1.1091 8.7999 19 6 6.5091 -1.9180 8.9838 20 7 6.3887 -2.1608 10.2707 21 14 8.0992 -2.3389 8.0985 22 1 9.0185 -1.1737 8.1514 23 1 8.7395 -3.5048 8.7586 24 1 7.8038 -2.6725 6.6820 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 3.0129 4.2305 1.2148 31 1 2.0142 2.6687 3.1103 32 1 1.3020 1.1187 2.6016 33 1 3.5742 0.1634 2.3310 34 1 4.2864 1.7133 2.8397 35 1 2.4609 0.0904 4.4897 36 1 4.6411 -0.9482 4.2199 37 1 5.3538 0.6013 4.7293 38 1 5.7940 -2.0068 6.2841 39 1 6.4272 -0.3841 6.6501 40 1 7.1256 -2.5587 10.7601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329134331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:21 Heat of formation + Delta-G solvation = 68.814074 kcal Electronic energy + Delta-G solvation = -20475.936526 eV Core-core repulsion = 17325.887688 eV Total energy + Delta-G solvation = -3150.048837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.11179 -39.09574 -37.43868 -36.01155 -35.27529 -34.81118 -33.51474 -30.57894 -30.33062 -28.07822 -25.32474 -24.45677 -23.64085 -23.30999 -22.92977 -21.40300 -18.96278 -18.37024 -17.98185 -17.42057 -16.89940 -16.40871 -16.21826 -15.85181 -15.51833 -15.07275 -14.93118 -14.62790 -14.58074 -14.19175 -14.10879 -13.85906 -13.56512 -13.30415 -13.16581 -12.82393 -12.66549 -12.53111 -12.43034 -12.29187 -12.17268 -12.08479 -11.67584 -11.65506 -11.32168 -11.27407 -11.07872 -10.73001 -10.21532 -9.52409 -8.24721 -6.30226 0.85284 1.42899 1.45545 1.49342 1.55090 1.88243 1.95673 1.96501 2.40788 3.06253 3.11720 3.23137 3.35777 3.65803 3.79871 3.83705 3.99671 4.09516 4.25635 4.31392 4.37692 4.43788 4.49696 4.53298 4.58449 4.81010 4.88264 4.91560 4.93559 4.95659 5.10900 5.19114 5.24805 5.29283 5.46421 5.63094 5.83716 5.96649 6.23429 6.26115 6.75099 6.81245 7.34591 7.74445 8.92204 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.027311 B = 0.003051 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.994245 B = 9175.054300 C = 9601.753430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C 0.180 3.820 4 N -0.344 5.344 5 N -0.349 5.349 6 C 0.164 3.836 7 N -0.466 5.466 8 C 0.107 3.893 9 C 0.049 3.951 10 N -0.684 5.684 11 C 0.077 3.923 12 C 0.024 3.976 13 H 0.123 0.877 14 C 0.248 3.752 15 N -0.503 5.503 16 C -0.004 4.004 17 C -0.530 4.530 18 H 0.030 0.970 19 C 0.002 3.998 20 N -0.955 5.955 21 Si 0.947 3.053 22 H -0.258 1.258 23 H -0.298 1.298 24 H -0.237 1.237 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.256 0.744 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.036 0.964 34 H 0.089 0.911 35 H 0.341 0.659 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 9.002 -19.174 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 C -0.089 4.089 4 N -0.183 5.183 5 N -0.187 5.187 6 C -0.125 4.125 7 N -0.156 5.156 8 C -0.015 4.015 9 C -0.081 4.081 10 N -0.316 5.316 11 C -0.053 4.053 12 C 0.002 3.998 13 H 0.141 0.859 14 C -0.069 4.069 15 N -0.181 5.181 16 C -0.043 4.043 17 C -0.568 4.568 18 H 0.049 0.951 19 C -0.194 4.194 20 N -0.595 5.595 21 Si 0.770 3.230 22 H -0.182 1.182 23 H -0.224 1.224 24 H -0.160 1.160 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.272 0.728 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.159 0.841 36 H 0.061 0.939 37 H 0.133 0.867 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.304 8.848 -20.113 23.156 hybrid contribution 0.721 -1.318 1.409 2.060 sum -6.584 7.530 -18.705 21.211 Atomic orbital electron populations 1.21716 0.92760 1.03615 1.02049 1.20163 0.97254 0.85039 1.05418 1.25343 1.02136 0.98557 0.82896 1.74159 1.18409 0.99866 1.25888 1.74150 1.19652 1.13598 1.11341 1.27182 1.01045 0.91448 0.92777 1.46393 1.48534 1.11689 1.08988 1.22061 0.99422 1.03897 0.76154 1.22204 0.98161 0.99423 0.88267 1.60398 1.05391 1.47468 1.18317 1.21990 0.94316 0.97900 0.91084 1.19094 0.88350 0.93649 0.98689 0.85889 1.29643 0.93060 0.93271 0.90893 1.81029 1.14285 1.11891 1.10873 1.19591 0.93590 0.97384 0.93770 1.21422 1.00322 1.40687 0.94418 0.95133 1.26037 1.03048 0.95027 0.95323 1.70085 1.34025 1.45492 1.09942 0.85706 0.78835 0.78236 0.80176 1.18229 1.22428 1.15986 0.89592 0.92456 0.93069 0.88204 0.88433 0.72844 0.85138 0.87596 0.94536 0.89266 0.84080 0.93898 0.86710 0.95574 0.91883 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 71.98 0.71 -0.85 16 2 C -0.04 -0.49 6.19 29.85 0.18 -0.31 16 3 C 0.18 3.34 7.28 137.98 1.01 4.35 16 4 N -0.34 -9.02 12.21 -50.16 -0.61 -9.64 16 5 N -0.35 -8.83 12.21 -59.99 -0.73 -9.56 16 6 C 0.16 2.61 12.74 180.11 2.29 4.90 16 7 N -0.47 -6.54 2.75 -518.69 -1.42 -7.97 16 8 C 0.11 0.92 6.08 86.38 0.53 1.44 16 9 C 0.05 0.54 6.01 86.30 0.52 1.06 16 10 N -0.68 -10.22 6.50 -513.91 -3.34 -13.56 16 11 C 0.08 1.46 5.12 86.30 0.44 1.90 16 12 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 13 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 14 C 0.25 8.62 12.97 89.45 1.16 9.78 16 15 N -0.50 -19.82 18.53 19.99 0.37 -19.45 16 16 C 0.00 -0.16 3.49 29.85 0.10 -0.05 16 17 C -0.53 -27.35 9.15 25.60 0.23 -27.11 16 18 H 0.03 1.79 7.84 -2.91 -0.02 1.76 16 19 C 0.00 0.13 5.47 84.66 0.46 0.59 16 20 N -0.95 -57.81 13.96 21.45 0.30 -57.51 16 21 Si 0.95 40.09 27.47 68.60 1.88 41.97 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.30 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.24 -8.87 6.54 99.48 0.65 -8.22 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.10 0.91 7.62 -2.38 -0.02 0.89 16 30 H 0.26 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 0.74 8.02 -2.38 -0.02 0.72 16 33 H 0.04 0.44 7.82 -2.39 -0.02 0.42 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.34 5.44 7.81 -89.69 -0.70 4.74 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.03 0.97 7.20 -2.39 -0.02 0.96 16 39 H 0.06 2.06 7.57 -2.39 -0.02 2.04 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -75.51 344.73 4.34 -71.17 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.28 Total: 8.18 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 7.61 Total: -3.64 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.44 Total: -117.68 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.88 Total: 41.97 kcal Total: -75.51 4.34 -71.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329134331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.989 kcal (2) G-P(sol) polarization free energy of solvation -75.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds