Wall clock time and date at job start Mon Mar 30 2020 01:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35043 * 126.40230 * 2 1 4 4 N 1.30491 * 108.70204 * 180.26598 * 3 2 1 5 5 C 1.34124 * 109.25683 * 359.76632 * 4 3 2 6 6 C 1.34669 * 108.01898 * 359.97438 * 5 4 3 7 7 C 1.50707 * 126.59032 * 179.97438 * 6 5 4 8 8 H 1.08996 * 115.54751 * 179.35380 * 7 6 5 9 9 C 1.53010 * 117.49508 * 33.64986 * 7 6 5 10 10 C 1.52996 * 117.49686 * 325.02982 * 7 6 5 11 11 H 1.09003 * 117.50423 * 359.97438 * 10 7 6 12 12 C 1.50702 * 117.49493 * 214.97547 * 10 7 6 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 10 7 14 14 N 1.34777 * 119.99928 * 179.72213 * 12 10 7 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 10 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47273 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46983 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00145 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00374 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99796 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47429 * 89.99359 * 22 20 18 24 24 H 1.48498 * 109.47116 * 209.99875 * 22 20 18 25 25 H 1.48503 * 109.46936 * 329.99405 * 22 20 18 26 26 H 1.09006 * 109.47400 * 270.12836 * 1 2 3 27 27 H 1.09004 * 109.47191 * 30.12014 * 1 2 3 28 28 H 1.08999 * 109.47471 * 150.12325 * 1 2 3 29 29 H 1.08002 * 125.64576 * 359.97438 * 3 2 1 30 30 H 1.08005 * 125.98958 * 180.02562 * 5 4 3 31 31 H 1.08996 * 117.49405 * 145.02083 * 9 7 6 32 32 H 1.08991 * 117.49902 * 359.97438 * 9 7 6 33 33 H 0.97000 * 120.00317 * 0.28382 * 14 12 10 34 34 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 35 35 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 36 36 H 1.08998 * 109.47382 * 300.00439 * 16 15 14 37 37 H 1.09005 * 109.46800 * 60.00640 * 16 15 14 38 38 H 1.08992 * 109.47143 * 300.00104 * 17 16 15 39 39 H 1.08997 * 109.46799 * 60.00311 * 17 16 15 40 40 H 0.96990 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5095 0.6902 -0.0057 5 6 3.5460 -0.6506 -0.0044 6 6 2.2771 -1.1018 0.0030 7 6 1.8361 -2.5429 0.0065 8 1 0.7584 -2.7046 0.0237 9 6 2.7140 -3.5484 0.7544 10 6 2.6885 -3.5443 -0.7754 11 1 3.5680 -3.1609 -1.2927 12 6 1.9737 -4.6793 -1.4624 13 8 0.7670 -4.7724 -1.3833 14 7 2.6747 -5.5874 -2.1698 15 6 1.9793 -6.6873 -2.8426 16 6 2.9989 -7.5676 -3.5680 17 6 2.2726 -8.7167 -4.2702 18 6 3.2771 -9.5841 -4.9842 19 1 4.3284 -9.3404 -4.9411 20 6 2.8540 -10.6888 -5.6925 21 7 3.7306 -11.4461 -6.3152 22 14 1.0356 -11.1098 -5.7677 23 1 0.4186 -10.4329 -6.9365 24 1 0.8731 -12.5796 -5.9041 25 1 0.3696 -10.6518 -4.5219 26 1 -0.3634 0.0023 1.0277 27 1 -0.3634 0.8889 -0.5157 28 1 -0.3634 -0.8911 -0.5119 29 1 1.9335 2.1144 -0.0004 30 1 4.4368 -1.2613 -0.0078 31 1 2.2137 -4.3719 1.2639 32 1 3.6106 -3.1677 1.2435 33 1 3.6398 -5.5128 -2.2333 34 1 1.4442 -7.2846 -2.1043 35 1 1.2704 -6.2815 -3.5644 36 1 3.5344 -6.9706 -4.3063 37 1 3.7074 -7.9735 -2.8459 38 1 1.7376 -9.3136 -3.5317 39 1 1.5639 -8.3112 -4.9922 40 1 3.4330 -12.2234 -6.8131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330807683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:43 Heat of formation + Delta-G solvation = 36.755431 kcal Electronic energy + Delta-G solvation = -20177.951507 eV Core-core repulsion = 16994.219752 eV Total energy + Delta-G solvation = -3183.731755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.44393 -39.94619 -36.98670 -35.43712 -34.34561 -33.33387 -31.49584 -29.71962 -27.53592 -27.33339 -24.64973 -23.59729 -22.38305 -21.69189 -20.75459 -19.99870 -19.53260 -17.80005 -17.11612 -16.68875 -16.03820 -15.78937 -15.47789 -14.98933 -14.65168 -14.24710 -13.98453 -13.83350 -13.76192 -13.35017 -13.10799 -12.73184 -12.68339 -12.21372 -12.04930 -11.95050 -11.33712 -11.11363 -10.96541 -10.88144 -10.25732 -10.24096 -10.00902 -9.86858 -9.81323 -9.62566 -9.25051 -8.92362 -8.57471 -8.53099 -6.08054 -4.06935 1.58085 2.38025 2.48073 2.84521 3.20162 3.29472 3.37138 3.40955 3.70596 4.15627 4.30340 4.38470 4.42497 4.45293 4.57994 4.70615 4.78582 4.88147 4.99514 5.00697 5.25863 5.30214 5.37058 5.50667 5.61179 5.64479 5.70588 5.97459 6.07467 6.30236 6.40084 6.41006 6.65498 6.75830 6.84472 7.19921 7.33391 7.57597 7.74384 7.76231 8.24985 8.48450 8.95802 9.54039 11.05183 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039248 B = 0.002536 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.242362 B =11038.506182 C =11341.441350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.457 5.457 3 C 0.179 3.821 4 N -0.492 5.492 5 C -0.024 4.024 6 C 0.010 3.990 7 C -0.056 4.056 8 H 0.123 0.877 9 C -0.131 4.131 10 C -0.173 4.173 11 H 0.129 0.871 12 C 0.538 3.462 13 O -0.548 6.548 14 N -0.719 5.719 15 C 0.114 3.886 16 C -0.114 4.114 17 C -0.011 4.011 18 C -0.522 4.522 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.206 0.794 30 H 0.169 0.831 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.402 0.598 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 23.347 15.415 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.139 5.139 3 C -0.103 4.103 4 N -0.210 5.210 5 C -0.172 4.172 6 C -0.104 4.104 7 C -0.076 4.076 8 H 0.141 0.859 9 C -0.169 4.169 10 C -0.194 4.194 11 H 0.147 0.853 12 C 0.324 3.676 13 O -0.426 6.426 14 N -0.369 5.369 15 C -0.009 4.009 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.560 4.560 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.541 5.541 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.189 1.189 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.222 0.778 30 H 0.186 0.814 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.324 23.628 15.330 28.664 hybrid contribution -1.182 -0.783 -0.333 1.456 sum -6.506 22.845 14.997 28.091 Atomic orbital electron populations 1.22105 0.76423 1.05094 1.03801 1.45220 1.07746 1.06509 1.54466 1.24943 0.85609 0.93375 1.06363 1.70284 1.19417 1.11861 1.19406 1.22013 0.95580 0.91156 1.08470 1.20285 0.90978 0.87991 1.11187 1.20107 0.98801 0.84624 1.04080 0.85867 1.23142 1.01906 1.00561 0.91273 1.22430 1.02678 0.98466 0.95873 0.85278 1.19547 0.87183 0.82225 0.78630 1.90684 1.14220 1.75599 1.62107 1.46081 1.11172 1.27876 1.51751 1.21679 0.96109 0.87076 0.96028 1.21710 0.97421 0.97108 0.98909 1.19501 0.96534 0.93327 0.95535 1.21094 0.94810 1.09317 1.30819 0.90980 1.25032 0.97609 0.95969 0.94886 1.69907 1.33978 1.16698 1.33557 0.86774 0.85956 0.77468 0.79084 1.20256 1.21352 1.18921 0.90317 0.89237 0.89231 0.77777 0.81398 0.87398 0.87072 0.76385 0.91737 0.91775 0.92056 0.92000 0.96321 0.96772 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 10.96 59.84 0.66 0.98 16 2 N -0.46 -3.81 3.15 -121.36 -0.38 -4.19 16 3 C 0.18 1.55 12.56 -90.38 -1.14 0.42 16 4 N -0.49 -5.68 11.25 -14.67 -0.16 -5.85 16 5 C -0.02 -0.25 10.94 -17.81 -0.19 -0.45 16 6 C 0.01 0.10 6.63 -81.60 -0.54 -0.44 16 7 C -0.06 -0.53 5.53 -91.77 -0.51 -1.03 16 8 H 0.12 1.26 6.93 -51.93 -0.36 0.90 16 9 C -0.13 -1.05 9.76 -26.72 -0.26 -1.31 16 10 C -0.17 -1.66 5.71 -91.77 -0.52 -2.19 16 11 H 0.13 1.04 7.98 -51.93 -0.41 0.62 16 12 C 0.54 7.23 7.61 -10.98 -0.08 7.15 16 13 O -0.55 -9.36 16.26 5.55 0.09 -9.27 16 14 N -0.72 -9.43 5.56 -60.29 -0.33 -9.77 16 15 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 16 C -0.11 -2.07 5.27 -26.73 -0.14 -2.22 16 17 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 18 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 19 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 22 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.48 7.38 -51.93 -0.38 0.10 16 29 H 0.21 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.17 1.44 8.06 -52.48 -0.42 1.01 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.11 0.70 7.95 -51.93 -0.41 0.29 16 33 H 0.40 4.21 8.47 -40.82 -0.35 3.87 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 39 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -35.41 341.10 -8.92 -44.33 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.07 Total: 0.31 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -3.30 Total: -10.78 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.11 Total: -46.67 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.41 -8.92 -44.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330807683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.081 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds