Wall clock time and date at job start Mon Mar 30 2020 01:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35043 * 126.40230 * 2 1 4 4 N 1.30491 * 108.70204 * 180.26598 * 3 2 1 5 5 C 1.34124 * 109.25683 * 359.76632 * 4 3 2 6 6 C 1.34669 * 108.01898 * 359.97438 * 5 4 3 7 7 C 1.50707 * 126.59032 * 179.97438 * 6 5 4 8 8 H 1.08996 * 115.54751 * 179.35380 * 7 6 5 9 9 C 1.53010 * 117.49508 * 33.64986 * 7 6 5 10 10 C 1.52996 * 117.49686 * 325.02982 * 7 6 5 11 11 H 1.09003 * 117.50423 * 359.97438 * 10 7 6 12 12 C 1.50702 * 117.49493 * 214.97547 * 10 7 6 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 10 7 14 14 N 1.34777 * 119.99928 * 179.72213 * 12 10 7 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 10 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47273 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46983 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00145 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00374 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99796 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47429 * 89.99359 * 22 20 18 24 24 H 1.48498 * 109.47116 * 209.99875 * 22 20 18 25 25 H 1.48503 * 109.46936 * 329.99405 * 22 20 18 26 26 H 1.09006 * 109.47400 * 270.12836 * 1 2 3 27 27 H 1.09004 * 109.47191 * 30.12014 * 1 2 3 28 28 H 1.08999 * 109.47471 * 150.12325 * 1 2 3 29 29 H 1.08002 * 125.64576 * 359.97438 * 3 2 1 30 30 H 1.08005 * 125.98958 * 180.02562 * 5 4 3 31 31 H 1.08996 * 117.49405 * 145.02083 * 9 7 6 32 32 H 1.08991 * 117.49902 * 359.97438 * 9 7 6 33 33 H 0.97000 * 120.00317 * 0.28382 * 14 12 10 34 34 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 35 35 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 36 36 H 1.08998 * 109.47382 * 300.00439 * 16 15 14 37 37 H 1.09005 * 109.46800 * 60.00640 * 16 15 14 38 38 H 1.08992 * 109.47143 * 300.00104 * 17 16 15 39 39 H 1.08997 * 109.46799 * 60.00311 * 17 16 15 40 40 H 0.96990 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5095 0.6902 -0.0057 5 6 3.5460 -0.6506 -0.0044 6 6 2.2771 -1.1018 0.0030 7 6 1.8361 -2.5429 0.0065 8 1 0.7584 -2.7046 0.0237 9 6 2.7140 -3.5484 0.7544 10 6 2.6885 -3.5443 -0.7754 11 1 3.5680 -3.1609 -1.2927 12 6 1.9737 -4.6793 -1.4624 13 8 0.7670 -4.7724 -1.3833 14 7 2.6747 -5.5874 -2.1698 15 6 1.9793 -6.6873 -2.8426 16 6 2.9989 -7.5676 -3.5680 17 6 2.2726 -8.7167 -4.2702 18 6 3.2771 -9.5841 -4.9842 19 1 4.3284 -9.3404 -4.9411 20 6 2.8540 -10.6888 -5.6925 21 7 3.7306 -11.4461 -6.3152 22 14 1.0356 -11.1098 -5.7677 23 1 0.4186 -10.4329 -6.9365 24 1 0.8731 -12.5796 -5.9041 25 1 0.3696 -10.6518 -4.5219 26 1 -0.3634 0.0023 1.0277 27 1 -0.3634 0.8889 -0.5157 28 1 -0.3634 -0.8911 -0.5119 29 1 1.9335 2.1144 -0.0004 30 1 4.4368 -1.2613 -0.0078 31 1 2.2137 -4.3719 1.2639 32 1 3.6106 -3.1677 1.2435 33 1 3.6398 -5.5128 -2.2333 34 1 1.4442 -7.2846 -2.1043 35 1 1.2704 -6.2815 -3.5644 36 1 3.5344 -6.9706 -4.3063 37 1 3.7074 -7.9735 -2.8459 38 1 1.7376 -9.3136 -3.5317 39 1 1.5639 -8.3112 -4.9922 40 1 3.4330 -12.2234 -6.8131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330807683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:42 Heat of formation + Delta-G solvation = 14.095840 kcal Electronic energy + Delta-G solvation = -20178.934101 eV Core-core repulsion = 16994.219752 eV Total energy + Delta-G solvation = -3184.714349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.08996 -40.98021 -37.89071 -36.79287 -35.14748 -34.92225 -33.29215 -30.45707 -29.15074 -27.81556 -25.91295 -24.32218 -23.78416 -22.33626 -22.24269 -21.03715 -20.37511 -18.97647 -18.53533 -17.75878 -17.00382 -16.71002 -16.59430 -16.23887 -15.79840 -15.50821 -15.05669 -14.84554 -14.76628 -14.47017 -13.82932 -13.82183 -13.69688 -13.57342 -13.43001 -12.80444 -12.73968 -12.70517 -12.09833 -11.89762 -11.78297 -11.66540 -11.59972 -11.33639 -10.96683 -10.92717 -10.76618 -10.47881 -10.10630 -9.21867 -8.29614 -6.33636 0.91950 1.36589 1.38170 1.48293 1.49922 1.83736 2.12109 2.22454 2.36023 2.95436 3.06059 3.45122 3.63528 3.83275 3.88922 3.94310 4.06103 4.10359 4.14723 4.20122 4.36440 4.40240 4.49890 4.63732 4.70281 4.77005 4.87859 4.90280 4.94716 5.03380 5.07532 5.37824 5.42959 5.49817 5.55298 5.64841 5.73905 6.27165 6.27996 6.55299 6.74713 7.10252 7.21233 7.31223 8.86821 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039248 B = 0.002536 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.242362 B =11038.506182 C =11341.441350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.460 5.460 3 C 0.182 3.818 4 N -0.534 5.534 5 C -0.040 4.040 6 C 0.000 4.000 7 C -0.056 4.056 8 H 0.112 0.888 9 C -0.113 4.113 10 C -0.174 4.174 11 H 0.148 0.852 12 C 0.537 3.463 13 O -0.587 6.587 14 N -0.712 5.712 15 C 0.127 3.873 16 C -0.101 4.101 17 C -0.012 4.012 18 C -0.531 4.531 19 H 0.037 0.963 20 C 0.004 3.996 21 N -0.950 5.950 22 Si 0.948 3.052 23 H -0.268 1.268 24 H -0.285 1.285 25 H -0.247 1.247 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.239 0.761 30 H 0.179 0.821 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.416 0.584 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.268 24.877 16.556 30.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.142 5.142 3 C -0.100 4.100 4 N -0.252 5.252 5 C -0.187 4.187 6 C -0.115 4.115 7 C -0.076 4.076 8 H 0.130 0.870 9 C -0.150 4.150 10 C -0.195 4.195 11 H 0.166 0.834 12 C 0.325 3.675 13 O -0.468 6.468 14 N -0.363 5.363 15 C 0.003 3.997 16 C -0.139 4.139 17 C -0.050 4.050 18 C -0.569 4.569 19 H 0.056 0.944 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.772 3.228 23 H -0.193 1.193 24 H -0.210 1.210 25 H -0.170 1.170 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.255 0.745 30 H 0.196 0.804 31 H 0.125 0.875 32 H 0.151 0.849 33 H 0.253 0.747 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.587 25.178 16.484 30.806 hybrid contribution -0.729 -1.210 -0.683 1.569 sum -7.315 23.967 15.802 29.625 Atomic orbital electron populations 1.22337 0.74531 1.05926 1.05001 1.45465 1.08978 1.06052 1.53676 1.25621 0.85068 0.94725 1.04620 1.70263 1.21186 1.12530 1.21252 1.22285 0.96364 0.91219 1.08853 1.20331 0.91155 0.88364 1.11652 1.20029 0.98320 0.84784 1.04517 0.86956 1.23245 1.02184 0.99702 0.89903 1.22370 1.03017 0.97268 0.96842 0.83404 1.20125 0.86795 0.82582 0.77988 1.90666 1.16074 1.76619 1.63474 1.45930 1.11900 1.27087 1.51352 1.21310 0.95256 0.87491 0.95674 1.21483 0.97496 0.95980 0.98900 1.19468 0.95770 0.94216 0.95576 1.21470 0.94418 1.10058 1.30939 0.94437 1.26000 1.02740 0.95983 0.94609 1.70055 1.36498 1.17593 1.34970 0.85688 0.79843 0.77313 0.80003 1.19299 1.21040 1.17046 0.88941 0.86776 0.90061 0.74482 0.80379 0.87509 0.84942 0.74704 0.92302 0.92511 0.91777 0.91590 0.96034 0.96273 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.96 127.77 1.40 1.88 16 2 N -0.46 -6.86 3.15 -537.89 -1.70 -8.56 16 3 C 0.18 2.81 12.56 180.26 2.26 5.08 16 4 N -0.53 -11.69 11.25 -200.31 -2.25 -13.95 16 5 C -0.04 -0.78 10.94 83.52 0.91 0.14 16 6 C 0.00 0.01 6.63 40.96 0.27 0.28 16 7 C -0.06 -0.98 5.53 -11.54 -0.06 -1.05 16 8 H 0.11 2.22 6.93 -2.39 -0.02 2.20 16 9 C -0.11 -1.57 9.76 30.60 0.30 -1.27 16 10 C -0.17 -3.03 5.71 -11.54 -0.07 -3.10 16 11 H 0.15 2.03 7.98 -2.39 -0.02 2.01 16 12 C 0.54 13.73 7.61 87.66 0.67 14.39 16 13 O -0.59 -19.69 16.26 -3.04 -0.05 -19.74 16 14 N -0.71 -17.54 5.56 -463.06 -2.57 -20.11 16 15 C 0.13 3.90 5.67 86.38 0.49 4.39 16 16 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 17 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 18 C -0.53 -30.01 9.66 25.60 0.25 -29.77 16 19 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 20 C 0.00 0.20 5.47 84.66 0.46 0.67 16 21 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 22 Si 0.95 44.15 27.47 68.60 1.88 46.04 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 26 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 28 H 0.08 0.78 7.38 -2.39 -0.02 0.76 16 29 H 0.24 1.60 8.06 -2.91 -0.02 1.57 16 30 H 0.18 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.13 1.31 7.95 -2.39 -0.02 1.29 16 33 H 0.42 7.88 8.47 -92.71 -0.79 7.10 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 39 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 40 H 0.27 15.50 8.31 -92.72 -0.77 14.73 16 Total: -1.00 -77.29 341.10 2.98 -74.31 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.20 Total: 13.22 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 7.17 Total: -12.20 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -6.22 Total: -101.63 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.05 Total: -19.74 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Total: -77.29 2.98 -74.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330807683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.406 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds