Wall clock time and date at job start Mon Mar 30 2020 01:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99947 * 2 1 4 4 H 1.48503 * 109.47240 * 269.99995 * 3 2 1 5 5 H 1.48500 * 109.47013 * 30.00055 * 3 2 1 6 6 H 1.48500 * 109.47136 * 149.99401 * 3 2 1 7 7 C 1.37878 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99770 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.50085 * 60.07578 * 9 7 2 11 11 C 1.53114 * 109.50257 * 299.99514 * 9 7 2 12 12 C 1.53120 * 109.15916 * 182.36289 * 11 9 7 13 13 C 1.53036 * 109.27530 * 57.65827 * 12 11 9 14 14 N 1.46844 * 109.52529 * 300.81938 * 13 12 11 15 15 C 1.38378 * 111.00368 * 185.84329 * 14 13 12 16 16 N 1.31477 * 126.43521 * 295.86836 * 15 14 13 17 17 N 1.28418 * 110.50712 * 180.02562 * 16 15 14 18 18 N 1.28910 * 110.31824 * 0.02562 * 17 16 15 19 19 N 1.35300 * 126.44442 * 115.89516 * 15 14 13 20 20 C 1.46504 * 127.38115 * 359.97438 * 19 15 14 21 21 C 1.53781 * 113.61697 * 222.96933 * 20 19 15 22 22 C 1.53779 * 87.07996 * 220.02075 * 21 20 19 23 23 C 1.53775 * 87.08468 * 25.43277 * 22 21 20 24 24 C 1.46848 * 111.19778 * 61.74129 * 14 13 12 25 25 H 0.97000 * 120.00360 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.52005 * 62.46180 * 11 9 7 27 27 H 1.08993 * 109.52459 * 302.27553 * 11 9 7 28 28 H 1.08999 * 109.50409 * 297.71570 * 12 11 9 29 29 H 1.09001 * 109.49982 * 177.59530 * 12 11 9 30 30 H 1.09005 * 109.46381 * 180.80324 * 13 12 11 31 31 H 1.09000 * 109.46364 * 60.83855 * 13 12 11 32 32 H 1.09002 * 112.84934 * 354.27962 * 20 19 15 33 33 H 1.09000 * 113.61394 * 334.56948 * 21 20 19 34 34 H 1.09000 * 113.61321 * 105.47174 * 21 20 19 35 35 H 1.09006 * 113.61313 * 270.88410 * 22 21 20 36 36 H 1.08998 * 113.69107 * 139.99962 * 22 21 20 37 37 H 1.09009 * 113.61588 * 220.02209 * 23 22 21 38 38 H 1.09000 * 113.69069 * 89.12636 * 23 22 21 39 39 H 1.08993 * 109.46020 * 58.27772 * 24 14 13 40 40 H 1.08997 * 109.45906 * 178.24495 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5582 -0.8903 11 6 0.3701 -2.5808 1.2502 12 6 -0.3464 -3.9338 1.2724 13 6 0.6931 -5.0565 1.2406 14 7 1.5098 -4.9349 0.0263 15 6 2.3735 -6.0086 -0.1001 16 7 3.3584 -6.3186 0.7139 17 7 3.9637 -7.3751 0.3058 18 7 3.4214 -7.8107 -0.7795 19 7 2.3636 -6.9365 -1.0848 20 6 1.4471 -7.0134 -2.2252 21 6 0.9459 -8.4375 -2.5178 22 6 1.1024 -8.1013 -4.0102 23 6 2.1608 -7.0695 -3.5863 24 6 2.2442 -3.6634 0.0056 25 1 -0.4851 0.8400 -0.0004 26 1 -0.3675 -1.7784 1.2290 27 1 0.9909 -2.4826 2.1406 28 1 -0.9970 -4.0155 0.4018 29 1 -0.9422 -4.0152 2.1816 30 1 0.1858 -6.0214 1.2420 31 1 1.3346 -4.9825 2.1187 32 1 0.6515 -6.2698 -2.1797 33 1 1.6236 -9.2184 -2.1728 34 1 -0.0871 -8.6077 -2.2145 35 1 0.2114 -7.6560 -4.4532 36 1 1.5054 -8.9216 -4.6041 37 1 2.1085 -6.1352 -4.1455 38 1 3.1711 -7.4750 -3.5331 39 1 2.8785 -3.5959 0.8894 40 1 2.8635 -3.6164 -0.8901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332548446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:07 Heat of formation + Delta-G solvation = 123.699344 kcal Electronic energy + Delta-G solvation = -22150.118903 eV Core-core repulsion = 19002.450070 eV Total energy + Delta-G solvation = -3147.668833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.13372 -40.11341 -39.83831 -36.01209 -34.62889 -33.85546 -31.90757 -31.64740 -27.35652 -27.02851 -26.75259 -25.64263 -24.15662 -23.39953 -22.68293 -20.63016 -20.38653 -19.11462 -18.36112 -17.65676 -17.53205 -16.54089 -16.46492 -15.75626 -15.46400 -15.17224 -14.63064 -14.41253 -14.38487 -14.22581 -14.07480 -13.53658 -13.50573 -13.33278 -12.87568 -12.72717 -12.64846 -12.59559 -12.01189 -11.96887 -11.92928 -11.87536 -11.52858 -11.46937 -11.26977 -11.11044 -11.05190 -10.73324 -10.41014 -10.03328 -8.09572 -6.22264 -0.18611 0.64618 1.06257 1.42408 1.44964 1.53714 2.35596 2.50825 3.12428 3.19034 3.39010 3.42150 3.67042 3.76261 3.89132 4.06265 4.09708 4.20179 4.30430 4.44870 4.47414 4.51117 4.66885 4.76056 4.77876 4.79451 4.90330 4.90821 4.97720 4.98140 5.04688 5.13071 5.23571 5.41748 5.46792 5.62573 5.63936 5.90728 5.99947 6.12807 6.37052 6.86232 7.32484 7.45506 8.95085 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.004791 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.625061 B = 5843.008462 C = 6047.270937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.061 3.939 10 H 0.015 0.985 11 C -0.109 4.109 12 C -0.103 4.103 13 C 0.073 3.927 14 N -0.462 5.462 15 C 0.416 3.584 16 N -0.378 5.378 17 N -0.064 5.064 18 N -0.086 5.086 19 N -0.340 5.340 20 C 0.104 3.896 21 C -0.133 4.133 22 C -0.117 4.117 23 C -0.144 4.144 24 C 0.094 3.906 25 H 0.262 0.738 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.148 0.852 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -14.495 -5.916 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.065 0.935 9 C 0.042 3.958 10 H 0.033 0.967 11 C -0.147 4.147 12 C -0.141 4.141 13 C -0.053 4.053 14 N -0.190 5.190 15 C 0.049 3.951 16 N -0.235 5.235 17 N -0.059 5.059 18 N -0.073 5.073 19 N -0.138 5.138 20 C 0.003 3.997 21 C -0.171 4.171 22 C -0.154 4.154 23 C -0.183 4.183 24 C -0.033 4.033 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.165 0.835 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.409 -15.180 -5.905 16.465 hybrid contribution 0.468 1.676 0.336 1.772 sum -1.941 -13.504 -5.569 14.736 Atomic orbital electron populations 1.69970 1.06791 1.27237 1.50681 1.25540 0.95617 1.01756 0.94588 0.85713 0.78748 0.79936 0.78193 1.20194 1.20692 1.19875 1.21377 0.92856 0.91942 1.51527 0.93494 1.18584 0.92497 0.89805 0.94936 0.96712 1.21537 0.99354 0.96572 0.97247 1.21598 0.96641 0.93257 1.02620 1.22236 0.94674 1.00755 0.87638 1.59272 1.19773 0.98481 1.41428 1.23356 0.92822 0.91906 0.87020 1.74878 1.09690 1.11703 1.27226 1.77883 1.18924 1.04579 1.04547 1.82331 0.98902 1.13773 1.12273 1.51980 1.23725 1.17859 1.20256 1.24110 0.91506 1.02986 0.81073 1.23354 1.03051 0.93029 0.97668 1.22686 0.99060 0.98766 0.94929 1.23413 0.99888 1.01989 0.92982 1.22164 0.95850 0.85692 0.99563 0.92827 0.91211 0.95538 0.91312 0.89653 0.89199 0.93891 0.83462 0.89459 0.88487 0.87365 0.88691 0.89567 0.89956 0.94927 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.48 11.35 21.45 0.24 -49.23 16 2 C 0.02 1.32 5.30 84.66 0.45 1.77 16 3 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -28.62 8.57 25.60 0.22 -28.40 16 8 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 9 C 0.06 2.87 2.26 -11.49 -0.03 2.85 16 10 H 0.01 0.76 8.14 -2.38 -0.02 0.74 16 11 C -0.11 -4.76 5.02 30.67 0.15 -4.60 16 12 C -0.10 -3.42 6.09 30.65 0.19 -3.24 16 13 C 0.07 2.32 5.39 86.33 0.47 2.79 16 14 N -0.46 -16.07 4.58 -707.27 -3.24 -19.31 16 15 C 0.42 14.35 6.49 260.65 1.69 16.04 16 16 N -0.38 -14.47 12.15 -58.70 -0.71 -15.18 16 17 N -0.06 -2.35 13.38 37.02 0.50 -1.85 16 18 N -0.09 -2.79 13.59 37.02 0.50 -2.28 16 19 N -0.34 -10.07 3.73 -326.52 -1.22 -11.28 16 20 C 0.10 2.22 4.73 45.52 0.22 2.44 16 21 C -0.13 -2.04 7.80 31.12 0.24 -1.80 16 22 C -0.12 -1.37 8.08 31.12 0.25 -1.12 16 23 C -0.14 -2.58 7.87 31.12 0.25 -2.33 16 24 C 0.09 3.90 4.59 86.33 0.40 4.30 16 25 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 26 H 0.07 3.45 6.15 -2.38 -0.01 3.43 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 2.39 8.10 -2.38 -0.02 2.37 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.15 3.06 8.05 -2.39 -0.02 3.04 16 33 H 0.09 1.55 7.90 -2.39 -0.02 1.53 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 2.32 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -60.55 325.75 3.61 -56.94 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.02 Total: 9.13 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.49 Total: -11.32 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -3.93 Total: -99.14 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -60.55 3.61 -56.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332548446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.641 kcal (2) G-P(sol) polarization free energy of solvation -60.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds