Wall clock time and date at job start Mon Mar 30 2020 02:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99782 * 2 1 4 4 C 1.50703 * 120.00479 * 180.27329 * 2 1 3 5 5 N 1.46494 * 109.46919 * 95.50837 * 4 2 1 6 6 N 1.40587 * 127.38099 * 65.46846 * 5 4 2 7 7 N 1.28910 * 106.81822 * 179.88392 * 6 5 4 8 8 N 1.28426 * 110.31365 * 0.38272 * 7 6 5 9 9 C 1.31481 * 110.50505 * 359.74680 * 8 7 6 10 10 N 1.38385 * 126.43283 * 180.02562 * 9 8 7 11 11 C 1.46847 * 110.99957 * 238.23247 * 10 9 8 12 12 C 1.53032 * 109.52380 * 174.16273 * 11 10 9 13 13 C 1.53119 * 109.27958 * 59.18240 * 12 11 10 14 14 C 1.53120 * 109.15943 * 302.34433 * 13 12 11 15 15 H 1.09003 * 109.50504 * 297.71372 * 14 13 12 16 16 C 1.50697 * 109.50297 * 177.63007 * 14 13 12 17 17 H 1.08001 * 120.00549 * 240.00101 * 16 14 13 18 18 C 1.37880 * 119.99988 * 60.00495 * 16 14 13 19 19 N 1.31513 * 119.99790 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00420 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47179 * 89.99613 * 20 18 16 22 22 H 1.48498 * 109.47105 * 209.99994 * 20 18 16 23 23 H 1.48507 * 109.47003 * 329.99891 * 20 18 16 24 24 C 1.46842 * 110.99836 * 114.02630 * 10 9 8 25 25 H 1.08008 * 119.99309 * 179.72122 * 1 2 3 26 26 H 1.07999 * 120.00330 * 359.72637 * 1 2 3 27 27 H 1.09000 * 109.46879 * 94.92499 * 3 2 1 28 28 H 1.08993 * 109.47129 * 214.92406 * 3 2 1 29 29 H 1.09002 * 109.46725 * 334.92734 * 3 2 1 30 30 H 1.09005 * 109.47062 * 215.51506 * 4 2 1 31 31 H 1.09001 * 109.46849 * 335.50540 * 4 2 1 32 32 H 1.08994 * 109.46562 * 294.18491 * 11 10 9 33 33 H 1.09001 * 109.45648 * 54.15919 * 11 10 9 34 34 H 1.09004 * 109.50502 * 179.12589 * 12 11 10 35 35 H 1.09007 * 109.50367 * 299.23884 * 12 11 10 36 36 H 1.08999 * 109.52022 * 62.24839 * 13 12 11 37 37 H 1.08999 * 109.52365 * 182.43814 * 13 12 11 38 38 H 0.97002 * 120.00525 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.46255 * 305.85179 * 24 10 9 40 40 H 1.09001 * 109.46508 * 65.82237 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 -0.0062 5 7 2.4226 -1.6550 -1.3827 6 7 3.3019 -0.9667 -2.2368 7 7 3.3280 -1.6180 -3.3489 8 7 2.5512 -2.6388 -3.2860 9 6 1.9745 -2.7068 -2.1064 10 7 1.0782 -3.6729 -1.6842 11 6 -0.1956 -3.0666 -1.2764 12 6 -1.2073 -4.1691 -0.9557 13 6 -0.6562 -5.0492 0.1696 14 6 0.6936 -5.6296 -0.2616 15 1 0.5545 -6.2611 -1.1390 16 6 1.2706 -6.4504 0.8629 17 1 2.2260 -6.1846 1.2904 18 6 0.5787 -7.5409 1.3458 19 7 -0.5851 -7.8643 0.8255 20 14 1.2941 -8.5588 2.7391 21 1 0.8386 -8.0065 4.0402 22 1 0.8355 -9.9653 2.6106 23 1 2.7771 -8.5138 2.6742 24 6 1.6502 -4.4847 -0.6025 25 1 -0.5399 -0.9354 -0.0046 26 1 -0.5400 0.9353 0.0045 27 1 2.3215 1.5757 1.0239 28 1 2.9748 1.1986 -0.5883 29 1 1.4389 2.0852 -0.4355 30 1 2.9697 -1.2042 0.5913 31 1 1.4354 -2.0893 0.4161 32 1 -0.0376 -2.4500 -0.3916 33 1 -0.5788 -2.4469 -2.0872 34 1 -2.1478 -3.7188 -0.6381 35 1 -1.3763 -4.7777 -1.8441 36 1 -0.5238 -4.4490 1.0698 37 1 -1.3542 -5.8616 0.3718 38 1 -1.0721 -8.6313 1.1655 39 1 2.6077 -4.8949 -0.9236 40 1 1.7995 -3.8615 0.2792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332943284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:45 Heat of formation + Delta-G solvation = 129.172780 kcal Electronic energy + Delta-G solvation = -22460.711568 eV Core-core repulsion = 19313.280080 eV Total energy + Delta-G solvation = -3147.431487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.17319 -40.45328 -37.91087 -35.99078 -34.59518 -33.85124 -31.98218 -31.75688 -29.05587 -28.17060 -27.03240 -25.59873 -24.29524 -23.44946 -22.79089 -20.79462 -20.12172 -18.82564 -18.16227 -17.62606 -17.46153 -16.56320 -16.40415 -16.05523 -15.45910 -15.28067 -14.80651 -14.57000 -14.35237 -14.25808 -14.10877 -13.73991 -13.51831 -13.33973 -12.89274 -12.82227 -12.78759 -12.63660 -12.44024 -12.11033 -11.96385 -11.86708 -11.52216 -11.45567 -11.26351 -11.10890 -10.76405 -10.41465 -10.33866 -9.91934 -8.09358 -6.23110 -0.19514 0.41206 1.09609 1.33034 1.43159 1.46490 1.54295 2.08979 2.45992 3.02933 3.19710 3.45146 3.71323 3.78971 3.83786 3.99174 4.07585 4.16211 4.23816 4.28042 4.38306 4.40823 4.63101 4.66137 4.70013 4.77623 4.82315 4.89682 4.94762 5.04907 5.08076 5.21859 5.42848 5.44515 5.60927 5.63562 5.64234 5.88249 5.99486 6.13696 6.33990 6.86646 7.37093 7.45468 8.95394 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.005189 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.896734 B = 5395.193395 C = 5600.117611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.163 4.163 3 C -0.114 4.114 4 C 0.135 3.865 5 N -0.380 5.380 6 N -0.083 5.083 7 N -0.063 5.063 8 N -0.340 5.340 9 C 0.423 3.577 10 N -0.461 5.461 11 C 0.056 3.944 12 C -0.108 4.108 13 C -0.107 4.107 14 C 0.057 3.943 15 H 0.002 0.998 16 C -0.536 4.536 17 H 0.054 0.946 18 C 0.023 3.977 19 N -0.910 5.910 20 Si 0.950 3.050 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.081 3.919 25 H 0.107 0.893 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.262 0.738 39 H 0.056 0.944 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 15.926 2.474 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C -0.171 4.171 4 C 0.015 3.985 5 N -0.182 5.182 6 N -0.071 5.071 7 N -0.058 5.058 8 N -0.194 5.194 9 C 0.057 3.943 10 N -0.188 5.188 11 C -0.070 4.070 12 C -0.146 4.146 13 C -0.145 4.145 14 C 0.038 3.962 15 H 0.021 0.979 16 C -0.574 4.574 17 H 0.072 0.928 18 C -0.177 4.177 19 N -0.549 5.549 20 Si 0.776 3.224 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.045 4.045 25 H 0.125 0.875 26 H 0.148 0.852 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.059 16.048 1.144 16.088 hybrid contribution 0.038 -0.898 1.868 2.073 sum -0.022 15.150 3.012 15.446 Atomic orbital electron populations 1.24388 0.94903 1.04098 0.95898 1.21768 0.95795 0.94628 1.04188 1.20847 1.00095 0.92964 1.03204 1.21630 1.02922 0.97940 0.76012 1.52917 1.31124 1.19566 1.14625 1.82294 1.10325 1.17360 0.97091 1.78044 1.12666 1.00438 1.14693 1.74698 1.11598 1.15908 1.17204 1.23879 0.94222 0.87506 0.88686 1.59205 1.02035 1.16381 1.41185 1.22694 0.86756 0.97268 1.00284 1.21631 0.97375 0.96174 0.99432 1.21534 0.98966 0.98182 0.95807 1.18599 0.91991 0.90689 0.94945 0.97935 1.21358 1.05262 1.12327 1.18480 0.92772 1.25585 0.95191 0.98090 0.98839 1.69995 1.14387 1.27712 1.42775 0.85685 0.78708 0.78009 0.80007 1.19779 1.21317 1.19741 1.22390 0.98586 0.94807 0.88722 0.87538 0.85227 0.89562 0.92285 0.90766 0.85852 0.86629 0.91540 0.89554 0.88888 0.92590 0.93952 0.91408 0.92904 0.92557 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 13.75 67.78 0.93 -1.48 16 2 C -0.16 -2.88 5.64 -16.48 -0.09 -2.97 16 3 C -0.11 -1.73 10.05 71.24 0.72 -1.01 16 4 C 0.13 2.90 5.72 85.64 0.49 3.39 16 5 N -0.38 -11.00 3.67 -353.36 -1.30 -12.30 16 6 N -0.08 -2.68 13.89 37.02 0.51 -2.16 16 7 N -0.06 -2.29 13.38 37.02 0.50 -1.80 16 8 N -0.34 -13.08 12.20 -58.69 -0.72 -13.79 16 9 C 0.42 14.47 6.72 260.65 1.75 16.22 16 10 N -0.46 -16.00 4.68 -707.26 -3.31 -19.31 16 11 C 0.06 1.57 4.84 86.32 0.42 1.98 16 12 C -0.11 -3.41 6.09 30.64 0.19 -3.23 16 13 C -0.11 -4.32 5.02 30.67 0.15 -4.17 16 14 C 0.06 2.60 2.26 -11.49 -0.03 2.57 16 15 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 16 C -0.54 -27.10 8.57 25.60 0.22 -26.88 16 17 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 18 C 0.02 1.18 5.30 84.66 0.45 1.62 16 19 N -0.91 -49.11 11.35 21.45 0.24 -48.86 16 20 Si 0.95 41.01 29.54 68.60 2.03 43.04 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 C 0.08 3.08 4.42 86.33 0.38 3.46 16 25 H 0.11 1.71 5.28 -2.91 -0.02 1.69 16 26 H 0.13 1.51 7.99 -2.91 -0.02 1.48 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 29 H 0.07 0.98 7.99 -2.39 -0.02 0.96 16 30 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.12 2.52 3.89 -2.39 -0.01 2.51 16 32 H 0.07 1.59 2.80 -2.39 -0.01 1.58 16 33 H 0.09 2.23 8.10 -2.39 -0.02 2.21 16 34 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.06 1.94 8.14 -2.38 -0.02 1.93 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.07 3.22 6.15 -2.39 -0.01 3.20 16 38 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 39 H 0.06 2.31 8.10 -2.39 -0.02 2.29 16 40 H 0.05 1.76 5.92 -2.39 -0.01 1.74 16 Total: -1.00 -60.13 317.63 4.58 -55.55 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.05 Total: 10.12 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 5.58 Total: -10.48 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -4.07 Total: -98.22 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -60.13 4.58 -55.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332943284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.720 kcal (2) G-P(sol) polarization free energy of solvation -60.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds