Wall clock time and date at job start Mon Mar 30 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 119.99841 * 2 1 4 4 C 1.50695 * 119.99761 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47217 * 94.53984 * 4 2 1 6 6 N 1.40584 * 127.38253 * 273.28673 * 5 4 2 7 7 N 1.28909 * 106.81641 * 179.97438 * 6 5 4 8 8 N 1.28427 * 110.31800 * 359.97438 * 7 6 5 9 9 C 1.31482 * 110.50402 * 359.74503 * 8 7 6 10 10 N 1.38378 * 126.43565 * 180.26083 * 9 8 7 11 11 C 1.46842 * 110.99906 * 271.19378 * 10 9 8 12 12 C 1.53037 * 109.52130 * 185.83847 * 11 10 9 13 13 C 1.53115 * 109.28326 * 300.82150 * 12 11 10 14 14 C 1.53122 * 109.15801 * 57.65238 * 13 12 11 15 15 H 1.08993 * 109.50359 * 62.28822 * 14 13 12 16 16 C 1.50700 * 109.50223 * 182.40533 * 14 13 12 17 17 H 1.08006 * 119.99638 * 119.80195 * 16 14 13 18 18 C 1.37873 * 120.00262 * 299.80476 * 16 14 13 19 19 N 1.31518 * 119.99919 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00279 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47380 * 89.99472 * 20 18 16 22 22 H 1.48495 * 109.47303 * 210.00170 * 20 18 16 23 23 H 1.48505 * 109.46822 * 329.99647 * 20 18 16 24 24 C 1.46845 * 110.99853 * 35.40337 * 10 9 8 25 25 H 1.08005 * 120.00262 * 5.41091 * 1 2 3 26 26 H 1.08000 * 120.00369 * 185.40880 * 1 2 3 27 27 H 1.09001 * 109.47003 * 239.99766 * 3 2 1 28 28 H 1.08997 * 109.47335 * 0.02562 * 3 2 1 29 29 H 1.09008 * 109.47087 * 120.00431 * 3 2 1 30 30 H 1.09001 * 109.47197 * 334.54347 * 4 2 1 31 31 H 1.09003 * 109.47172 * 214.53820 * 4 2 1 32 32 H 1.08994 * 109.46542 * 305.85676 * 11 10 9 33 33 H 1.08999 * 109.46211 * 65.82900 * 11 10 9 34 34 H 1.08999 * 109.50504 * 180.87927 * 12 11 10 35 35 H 1.09007 * 109.53526 * 60.78457 * 12 11 10 36 36 H 1.09002 * 109.52493 * 297.75412 * 13 12 11 37 37 H 1.08996 * 109.58109 * 177.58705 * 13 12 11 38 38 H 0.96999 * 120.00069 * 180.02562 * 19 18 16 39 39 H 1.08992 * 109.46953 * 294.17546 * 24 10 9 40 40 H 1.09005 * 109.46448 * 54.14792 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4023 -1.6728 -1.3777 6 7 1.6082 -2.3896 -2.2897 7 7 2.2891 -2.4883 -3.3799 8 7 3.4273 -1.9083 -3.2487 9 6 3.5439 -1.3891 -2.0464 10 7 4.6313 -0.6879 -1.5558 11 6 5.6093 -1.5952 -0.9422 12 6 6.7231 -0.7775 -0.2844 13 6 7.4027 0.0949 -1.3435 14 6 6.3537 0.9960 -2.0009 15 1 5.9226 1.6594 -1.2512 16 6 7.0035 1.8161 -3.0855 17 1 6.6639 1.7266 -4.1069 18 6 8.0315 2.6805 -2.7740 19 7 8.4447 2.7898 -1.5302 20 14 8.8364 3.6975 -4.1183 21 1 8.1215 4.9917 -4.2552 22 1 10.2561 3.9511 -3.7642 23 1 8.7717 2.9578 -5.4044 24 6 5.2506 0.1268 -2.6089 25 1 -0.5401 0.9312 -0.0882 26 1 -0.5401 -0.9311 0.0882 27 1 2.6901 1.3628 -0.8900 28 1 1.3552 2.1335 0.0005 29 1 2.6902 1.3628 0.8900 30 1 1.4415 -2.0839 0.4408 31 1 2.9783 -1.1968 0.5821 32 1 5.1140 -2.2068 -0.1881 33 1 6.0372 -2.2405 -1.7094 34 1 7.4570 -1.4514 0.1574 35 1 6.2984 -0.1419 0.4927 36 1 7.8617 -0.5416 -2.1000 37 1 8.1686 0.7112 -0.8725 38 1 9.1676 3.3982 -1.3110 39 1 5.6802 -0.5265 -3.3683 40 1 4.4948 0.7660 -3.0654 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332943286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:47 Heat of formation + Delta-G solvation = 120.744641 kcal Electronic energy + Delta-G solvation = -22291.781777 eV Core-core repulsion = 19143.984818 eV Total energy + Delta-G solvation = -3147.796959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.09061 -40.12195 -37.91014 -35.94063 -34.56522 -33.91659 -31.85663 -31.66275 -28.77165 -28.05262 -27.03200 -25.65651 -24.29229 -23.25311 -22.72525 -20.44584 -20.03308 -18.87530 -18.11864 -17.53928 -17.48754 -16.55134 -15.96817 -15.80087 -15.40537 -15.36952 -14.87484 -14.56751 -14.35578 -14.25967 -14.02990 -13.63017 -13.44037 -13.10920 -12.87631 -12.76382 -12.71219 -12.59485 -12.42106 -12.19102 -11.94066 -11.83094 -11.45674 -11.40704 -11.37230 -11.08737 -10.70934 -10.39562 -10.24520 -9.90729 -8.08751 -6.20715 -0.14975 0.45944 1.11576 1.37840 1.42575 1.45279 1.54040 2.39580 2.54462 3.19930 3.20554 3.55052 3.63213 3.92245 4.05310 4.08066 4.19344 4.32661 4.35576 4.48356 4.49866 4.52061 4.71235 4.77715 4.79958 4.82664 4.88940 4.95088 4.98578 5.12543 5.15837 5.24977 5.47746 5.53607 5.62437 5.65420 5.75498 5.91802 6.02217 6.15059 6.39150 6.87917 7.37035 7.46861 8.95931 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.005115 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.094859 B = 5473.026737 C = 5699.922194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.170 4.170 3 C -0.115 4.115 4 C 0.155 3.845 5 N -0.354 5.354 6 N -0.089 5.089 7 N -0.061 5.061 8 N -0.384 5.384 9 C 0.425 3.575 10 N -0.453 5.453 11 C 0.069 3.931 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.061 3.939 15 H 0.014 0.986 16 C -0.537 4.537 17 H 0.046 0.954 18 C 0.025 3.975 19 N -0.908 5.908 20 Si 0.946 3.054 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.274 1.274 24 C 0.098 3.902 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.068 0.932 38 H 0.262 0.738 39 H 0.035 0.965 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.004 -7.167 8.900 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C -0.171 4.171 4 C 0.036 3.964 5 N -0.152 5.152 6 N -0.076 5.076 7 N -0.057 5.057 8 N -0.242 5.242 9 C 0.059 3.941 10 N -0.179 5.179 11 C -0.057 4.057 12 C -0.141 4.141 13 C -0.148 4.148 14 C 0.042 3.958 15 H 0.032 0.968 16 C -0.576 4.576 17 H 0.064 0.936 18 C -0.175 4.175 19 N -0.547 5.547 20 Si 0.773 3.227 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.199 1.199 24 C -0.029 4.029 25 H 0.132 0.868 26 H 0.135 0.865 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.705 -7.482 8.409 16.239 hybrid contribution 1.116 0.898 -0.762 1.623 sum -10.589 -6.584 7.647 14.627 Atomic orbital electron populations 1.24174 0.94563 1.03717 0.95404 1.21796 0.95990 0.94767 1.04551 1.20805 1.00085 0.94088 1.02170 1.21305 1.03808 0.96443 0.74843 1.51837 1.10205 1.38620 1.14575 1.82369 1.15539 1.14588 0.95068 1.77869 0.98971 1.12980 1.15879 1.74916 1.14235 1.16736 1.18334 1.23362 0.90560 0.92612 0.87588 1.59183 1.06656 1.20507 1.31603 1.22332 0.91984 0.93189 0.98223 1.21592 0.96028 0.98318 0.98145 1.21538 0.99695 0.96725 0.96815 1.18585 0.90572 0.92116 0.94556 0.96816 1.21390 1.18136 1.23571 0.94488 0.93586 1.25522 0.97146 0.97588 0.97219 1.69973 1.28651 1.37647 1.18418 0.85738 0.77856 0.79196 0.79957 1.20344 1.20661 1.19857 1.22076 0.96473 0.94009 0.90348 0.86772 0.86527 0.94112 0.91131 0.90289 0.84770 0.85582 0.88265 0.94041 0.89492 0.91134 0.95558 0.91328 0.92882 0.94635 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 13.91 67.78 0.94 -1.32 16 2 C -0.17 -3.31 5.63 -16.49 -0.09 -3.40 16 3 C -0.11 -2.59 10.12 71.23 0.72 -1.87 16 4 C 0.16 2.93 6.67 85.63 0.57 3.50 16 5 N -0.35 -9.85 3.67 -353.36 -1.30 -11.15 16 6 N -0.09 -2.81 13.93 37.02 0.52 -2.29 16 7 N -0.06 -2.24 13.38 37.02 0.50 -1.75 16 8 N -0.38 -14.73 11.64 -58.69 -0.68 -15.41 16 9 C 0.43 14.20 6.79 260.65 1.77 15.96 16 10 N -0.45 -15.13 4.66 -707.26 -3.29 -18.42 16 11 C 0.07 1.99 5.39 86.33 0.47 2.46 16 12 C -0.10 -3.22 6.09 30.65 0.19 -3.04 16 13 C -0.11 -4.69 5.03 30.67 0.15 -4.53 16 14 C 0.06 2.85 2.26 -11.49 -0.03 2.83 16 15 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 16 C -0.54 -28.65 8.56 25.60 0.22 -28.43 16 17 H 0.05 2.49 7.74 -2.91 -0.02 2.46 16 18 C 0.02 1.33 5.30 84.65 0.45 1.78 16 19 N -0.91 -49.48 11.36 21.45 0.24 -49.23 16 20 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.10 4.04 4.30 86.33 0.37 4.42 16 25 H 0.11 1.65 7.84 -2.91 -0.02 1.62 16 26 H 0.12 1.53 7.97 -2.91 -0.02 1.51 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.13 1.75 7.97 -2.39 -0.02 1.73 16 31 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.10 2.21 8.10 -2.39 -0.02 2.19 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 3.34 6.16 -2.39 -0.01 3.33 16 38 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 39 H 0.04 1.56 8.05 -2.39 -0.02 1.54 16 40 H 0.05 2.22 8.10 -2.38 -0.02 2.20 16 Total: -1.00 -61.58 332.75 4.75 -56.83 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.02 Total: 8.44 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 5.73 Total: -11.65 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -4.02 Total: -98.26 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -61.58 4.75 -56.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332943286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.574 kcal (2) G-P(sol) polarization free energy of solvation -61.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds