Wall clock time and date at job start Mon Mar 30 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86804 * 120.00197 * 2 1 4 4 H 1.48498 * 109.46640 * 268.39418 * 3 2 1 5 5 H 1.48500 * 109.46944 * 28.39174 * 3 2 1 6 6 H 1.48494 * 109.47226 * 148.39639 * 3 2 1 7 7 C 1.38795 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00251 * 336.66858 * 7 2 1 9 9 N 1.36932 * 119.99713 * 156.66846 * 7 2 1 10 10 C 1.38222 * 120.00067 * 335.17507 * 9 7 2 11 11 N 1.31567 * 126.45460 * 97.50726 * 10 9 7 12 12 N 1.28417 * 110.49911 * 180.29682 * 11 10 9 13 13 N 1.28906 * 110.35194 * 359.74088 * 12 11 10 14 14 N 1.35432 * 126.46387 * 277.38023 * 10 9 7 15 15 C 1.46498 * 127.38273 * 359.97438 * 14 10 9 16 16 C 1.53780 * 113.61366 * 114.24743 * 15 14 10 17 17 C 1.53781 * 87.08596 * 89.11540 * 16 15 14 18 18 C 1.53782 * 87.16923 * 25.39279 * 17 16 15 19 19 C 1.46499 * 119.99681 * 155.18137 * 9 7 2 20 20 C 1.54271 * 110.03671 * 57.16782 * 19 9 7 21 21 C 1.54892 * 104.19441 * 217.10528 * 20 19 9 22 22 C 1.54884 * 102.74942 * 37.94026 * 21 20 19 23 23 C 1.53876 * 110.03517 * 299.99445 * 19 9 7 24 24 H 0.97003 * 119.99738 * 0.02562 * 1 2 3 25 25 H 1.09000 * 112.85176 * 343.04945 * 15 14 10 26 26 H 1.09000 * 113.61441 * 334.56807 * 16 15 14 27 27 H 1.09001 * 113.61964 * 203.66783 * 16 15 14 28 28 H 1.08996 * 113.61925 * 139.98010 * 17 16 15 29 29 H 1.09003 * 113.61379 * 270.80521 * 17 16 15 30 30 H 1.08990 * 113.61475 * 89.16228 * 18 17 16 31 31 H 1.09004 * 113.61194 * 220.06351 * 18 17 16 32 32 H 1.09007 * 110.01755 * 178.60613 * 19 9 7 33 33 H 1.09003 * 110.48138 * 335.78145 * 20 19 9 34 34 H 1.09001 * 110.48772 * 98.42231 * 20 19 9 35 35 H 1.08995 * 110.75064 * 279.62436 * 21 20 19 36 36 H 1.08999 * 110.91240 * 156.32893 * 21 20 19 37 37 H 1.08997 * 110.48609 * 203.38174 * 22 21 20 38 38 H 1.08994 * 110.48943 * 80.73694 * 22 21 20 39 39 H 1.08997 * 110.03382 * 238.57478 * 23 19 9 40 40 H 1.09001 * 110.02854 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.5312 2.0267 -1.3995 5 1 1.4306 2.6623 0.6657 6 1 3.5299 1.4502 0.7337 7 6 2.0096 -1.2020 0.0005 8 1 1.5358 -2.0989 0.3713 9 7 3.2949 -1.2507 -0.4691 10 6 3.7328 -0.3109 -1.3832 11 7 4.4160 0.7811 -1.1153 12 7 4.6566 1.4368 -2.1929 13 7 4.1598 0.8228 -3.2117 14 7 3.5415 -0.3417 -2.7236 15 6 2.8363 -1.3659 -3.4981 16 6 1.5505 -0.8544 -4.1688 17 6 2.4254 -0.4698 -5.3736 18 6 3.4038 -1.5642 -4.9155 19 6 4.2059 -2.2990 -0.0028 20 6 3.6039 -3.6896 -0.2924 21 6 4.0126 -4.5433 0.9337 22 6 3.8791 -3.5415 2.1074 23 6 4.3810 -2.2049 1.5230 24 1 -0.4850 0.8401 -0.0004 25 1 2.7005 -2.2956 -2.9457 26 1 1.1045 0.0015 -3.6623 27 1 0.8288 -1.6416 -4.3869 28 1 1.9583 -0.6769 -6.3364 29 1 2.8367 0.5377 -5.3107 30 1 3.1899 -2.5458 -5.3381 31 1 4.4520 -1.2806 -5.0108 32 1 5.1727 -2.1999 -0.4964 33 1 2.5183 -3.6269 -0.3689 34 1 4.0281 -4.1063 -1.2060 35 1 5.0413 -4.8903 0.8371 36 1 3.3331 -5.3854 1.0654 37 1 4.5042 -3.8501 2.9453 38 1 2.8381 -3.4549 2.4185 39 1 5.4328 -2.0608 1.7700 40 1 3.7878 -1.3795 1.9166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333731389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:49 Heat of formation + Delta-G solvation = 172.056907 kcal Electronic energy + Delta-G solvation = -23302.897317 eV Core-core repulsion = 20157.325425 eV Total energy + Delta-G solvation = -3145.571892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.19020 -38.51774 -38.28111 -34.98790 -32.45610 -31.97940 -30.33929 -28.18974 -27.27273 -25.85951 -25.53002 -24.31819 -22.45563 -21.42842 -20.29949 -19.55352 -19.26875 -17.85033 -16.42788 -16.08099 -15.69671 -15.23650 -14.86822 -14.52977 -14.20492 -13.86537 -13.35565 -12.83278 -12.81992 -12.47415 -12.26233 -12.09797 -11.84587 -11.45767 -11.17184 -11.05816 -10.79938 -10.71284 -10.69458 -10.58435 -10.41886 -10.38549 -10.17389 -10.03292 -9.91576 -9.81059 -9.38909 -8.91309 -8.60227 -7.77913 -6.35430 -3.83472 1.84123 2.48191 2.98801 3.48311 3.54220 3.83323 4.16494 4.39332 4.48432 4.74704 4.95344 5.02285 5.04052 5.08291 5.14082 5.35688 5.60114 5.68731 5.74108 5.80525 5.84905 5.94855 5.97837 6.00124 6.03068 6.08145 6.12628 6.25110 6.28687 6.30425 6.32176 6.38337 6.46128 6.50048 6.73396 6.78726 6.88451 7.07504 7.62489 7.88553 8.54950 9.25356 9.34771 9.45300 10.72521 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.009504 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.212432 B = 2945.410937 C = 3553.598005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.048 3.952 3 Si 0.874 3.126 4 H -0.297 1.297 5 H -0.307 1.307 6 H -0.234 1.234 7 C -0.291 4.291 8 H 0.111 0.889 9 N -0.499 5.499 10 C 0.494 3.506 11 N -0.356 5.356 12 N -0.056 5.056 13 N -0.110 5.110 14 N -0.368 5.368 15 C 0.136 3.864 16 C -0.140 4.140 17 C -0.140 4.140 18 C -0.138 4.138 19 C 0.175 3.825 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.132 4.132 24 H 0.270 0.730 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -8.900 -4.719 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.158 4.158 3 Si 0.706 3.294 4 H -0.225 1.225 5 H -0.236 1.236 6 H -0.159 1.159 7 C -0.418 4.418 8 H 0.129 0.871 9 N -0.220 5.220 10 C 0.134 3.866 11 N -0.216 5.216 12 N -0.052 5.052 13 N -0.097 5.097 14 N -0.171 5.171 15 C 0.031 3.969 16 C -0.178 4.178 17 C -0.178 4.178 18 C -0.177 4.177 19 C 0.069 3.931 20 C -0.174 4.174 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.171 4.171 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.560 -7.668 -5.005 10.713 hybrid contribution -0.373 0.312 0.049 0.489 sum 5.186 -7.356 -4.957 10.275 Atomic orbital electron populations 1.69832 1.05960 1.27792 1.47152 1.25273 0.95336 0.98325 0.96827 0.86949 0.80096 0.83001 0.79402 1.22476 1.23592 1.15855 1.18766 0.85498 0.96402 1.41118 0.87145 1.41291 1.11886 1.28533 1.40244 1.21662 0.91179 0.91796 0.82008 1.75095 1.22422 1.04767 1.19340 1.77805 1.13491 1.20535 0.93337 1.82171 1.13554 0.95210 1.18779 1.52311 1.39409 1.18220 1.07137 1.22212 0.93179 0.89414 0.92059 1.23222 0.95799 1.02388 0.96424 1.22954 0.97106 0.99885 0.97843 1.23225 1.00467 1.00056 0.93903 1.21362 0.90911 0.86826 0.93989 1.22804 1.03000 0.94652 0.96905 1.22416 1.00330 0.97551 0.95603 1.22276 1.01412 0.95016 0.96899 1.22497 1.00291 0.98633 0.95649 0.91975 0.86262 0.90577 0.88382 0.91376 0.89181 0.88569 0.90627 0.92145 0.89446 0.92715 0.92301 0.92054 0.92675 0.91285 0.92734 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.66 13.96 55.49 0.77 -23.89 16 2 C 0.05 1.30 5.34 -17.46 -0.09 1.21 16 3 Si 0.87 23.61 23.64 -169.99 -4.02 19.59 16 4 H -0.30 -8.43 5.82 56.52 0.33 -8.10 16 5 H -0.31 -8.48 7.11 56.52 0.40 -8.08 16 6 H -0.23 -6.40 6.35 56.52 0.36 -6.04 16 7 C -0.29 -7.16 8.48 -15.07 -0.13 -7.29 16 8 H 0.11 2.79 6.90 -52.49 -0.36 2.43 16 9 N -0.50 -10.91 2.40 -108.30 -0.26 -11.17 16 10 C 0.49 11.42 4.82 -320.36 -1.55 9.87 16 11 N -0.36 -8.91 7.75 30.10 0.23 -8.67 16 12 N -0.06 -1.36 12.26 60.35 0.74 -0.62 16 13 N -0.11 -2.45 12.45 60.35 0.75 -1.70 16 14 N -0.37 -7.77 3.77 -54.46 -0.21 -7.98 16 15 C 0.14 2.31 4.87 -67.03 -0.33 1.99 16 16 C -0.14 -2.26 7.88 -25.92 -0.20 -2.47 16 17 C -0.14 -1.98 7.73 -25.92 -0.20 -2.18 16 18 C -0.14 -1.84 7.67 -25.82 -0.20 -2.04 16 19 C 0.17 3.13 3.38 -66.81 -0.23 2.91 16 20 C -0.13 -2.04 6.39 -25.07 -0.16 -2.20 16 21 C -0.12 -1.57 6.91 -24.74 -0.17 -1.74 16 22 C -0.12 -1.69 6.83 -25.07 -0.17 -1.87 16 23 C -0.13 -2.24 6.28 -25.61 -0.16 -2.40 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.46 7.26 -51.93 -0.38 1.08 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 33 H 0.09 1.50 6.38 -51.93 -0.33 1.16 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.73 7.37 -51.93 -0.38 1.35 16 LS Contribution 313.95 15.07 4.73 4.73 Total: -1.00 -29.96 313.95 -7.03 -36.98 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.19 Total: -1.07 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.58 Total: -6.21 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 2.03 Total: -54.02 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.02 Total: 19.59 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.96 -7.03 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333731389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.040 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds