Wall clock time and date at job start Mon Mar 30 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86804 * 120.00197 * 2 1 4 4 H 1.48498 * 109.46640 * 268.39418 * 3 2 1 5 5 H 1.48500 * 109.46944 * 28.39174 * 3 2 1 6 6 H 1.48494 * 109.47226 * 148.39639 * 3 2 1 7 7 C 1.38795 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00251 * 336.66858 * 7 2 1 9 9 N 1.36932 * 119.99713 * 156.66846 * 7 2 1 10 10 C 1.38222 * 120.00067 * 335.17507 * 9 7 2 11 11 N 1.31567 * 126.45460 * 97.50726 * 10 9 7 12 12 N 1.28417 * 110.49911 * 180.29682 * 11 10 9 13 13 N 1.28906 * 110.35194 * 359.74088 * 12 11 10 14 14 N 1.35432 * 126.46387 * 277.38023 * 10 9 7 15 15 C 1.46498 * 127.38273 * 359.97438 * 14 10 9 16 16 C 1.53780 * 113.61366 * 114.24743 * 15 14 10 17 17 C 1.53781 * 87.08596 * 89.11540 * 16 15 14 18 18 C 1.53782 * 87.16923 * 25.39279 * 17 16 15 19 19 C 1.46499 * 119.99681 * 155.18137 * 9 7 2 20 20 C 1.54271 * 110.03671 * 57.16782 * 19 9 7 21 21 C 1.54892 * 104.19441 * 217.10528 * 20 19 9 22 22 C 1.54884 * 102.74942 * 37.94026 * 21 20 19 23 23 C 1.53876 * 110.03517 * 299.99445 * 19 9 7 24 24 H 0.97003 * 119.99738 * 0.02562 * 1 2 3 25 25 H 1.09000 * 112.85176 * 343.04945 * 15 14 10 26 26 H 1.09000 * 113.61441 * 334.56807 * 16 15 14 27 27 H 1.09001 * 113.61964 * 203.66783 * 16 15 14 28 28 H 1.08996 * 113.61925 * 139.98010 * 17 16 15 29 29 H 1.09003 * 113.61379 * 270.80521 * 17 16 15 30 30 H 1.08990 * 113.61475 * 89.16228 * 18 17 16 31 31 H 1.09004 * 113.61194 * 220.06351 * 18 17 16 32 32 H 1.09007 * 110.01755 * 178.60613 * 19 9 7 33 33 H 1.09003 * 110.48138 * 335.78145 * 20 19 9 34 34 H 1.09001 * 110.48772 * 98.42231 * 20 19 9 35 35 H 1.08995 * 110.75064 * 279.62436 * 21 20 19 36 36 H 1.08999 * 110.91240 * 156.32893 * 21 20 19 37 37 H 1.08997 * 110.48609 * 203.38174 * 22 21 20 38 38 H 1.08994 * 110.48943 * 80.73694 * 22 21 20 39 39 H 1.08997 * 110.03382 * 238.57478 * 23 19 9 40 40 H 1.09001 * 110.02854 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.5312 2.0267 -1.3995 5 1 1.4306 2.6623 0.6657 6 1 3.5299 1.4502 0.7337 7 6 2.0096 -1.2020 0.0005 8 1 1.5358 -2.0989 0.3713 9 7 3.2949 -1.2507 -0.4691 10 6 3.7328 -0.3109 -1.3832 11 7 4.4160 0.7811 -1.1153 12 7 4.6566 1.4368 -2.1929 13 7 4.1598 0.8228 -3.2117 14 7 3.5415 -0.3417 -2.7236 15 6 2.8363 -1.3659 -3.4981 16 6 1.5505 -0.8544 -4.1688 17 6 2.4254 -0.4698 -5.3736 18 6 3.4038 -1.5642 -4.9155 19 6 4.2059 -2.2990 -0.0028 20 6 3.6039 -3.6896 -0.2924 21 6 4.0126 -4.5433 0.9337 22 6 3.8791 -3.5415 2.1074 23 6 4.3810 -2.2049 1.5230 24 1 -0.4850 0.8401 -0.0004 25 1 2.7005 -2.2956 -2.9457 26 1 1.1045 0.0015 -3.6623 27 1 0.8288 -1.6416 -4.3869 28 1 1.9583 -0.6769 -6.3364 29 1 2.8367 0.5377 -5.3107 30 1 3.1899 -2.5458 -5.3381 31 1 4.4520 -1.2806 -5.0108 32 1 5.1727 -2.1999 -0.4964 33 1 2.5183 -3.6269 -0.3689 34 1 4.0281 -4.1063 -1.2060 35 1 5.0413 -4.8903 0.8371 36 1 3.3331 -5.3854 1.0654 37 1 4.5042 -3.8501 2.9453 38 1 2.8381 -3.4549 2.4185 39 1 5.4328 -2.0608 1.7700 40 1 3.7878 -1.3795 1.9166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333731389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:49 Heat of formation + Delta-G solvation = 154.489745 kcal Electronic energy + Delta-G solvation = -23303.659086 eV Core-core repulsion = 20157.325425 eV Total energy + Delta-G solvation = -3146.333661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.00972 -39.87822 -39.70938 -36.59155 -34.25602 -33.89661 -32.11133 -29.42870 -28.77603 -27.39309 -26.71662 -26.10758 -24.07775 -23.18906 -21.52769 -20.97731 -20.84434 -19.57851 -18.23716 -17.60648 -17.34698 -16.59031 -16.42848 -16.06748 -15.64027 -15.41978 -15.19137 -14.47462 -14.13193 -14.05392 -13.88416 -13.63449 -13.40156 -13.07912 -12.94518 -12.76508 -12.57540 -12.18914 -11.92122 -11.86318 -11.81676 -11.78774 -11.65102 -11.43525 -11.40439 -11.26998 -10.97125 -10.92319 -10.60286 -9.64298 -8.48736 -5.87629 0.05355 0.74931 1.04580 1.28787 1.41310 1.68003 2.20422 2.48068 2.88336 3.18464 3.49744 3.74758 3.81840 3.83026 3.85475 4.04522 4.15542 4.22875 4.38790 4.50007 4.52605 4.70747 4.71608 4.76533 4.78103 4.81454 4.94127 4.95309 4.98136 5.03037 5.10472 5.13964 5.22193 5.31650 5.41152 5.49374 5.60323 5.65052 5.70475 5.92559 6.60981 7.26921 7.44271 7.54957 8.63428 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.009504 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.212432 B = 2945.410937 C = 3553.598005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.015 3.985 3 Si 0.905 3.095 4 H -0.320 1.320 5 H -0.324 1.324 6 H -0.245 1.245 7 C -0.247 4.247 8 H 0.111 0.889 9 N -0.504 5.504 10 C 0.485 3.515 11 N -0.383 5.383 12 N -0.077 5.077 13 N -0.100 5.100 14 N -0.357 5.357 15 C 0.108 3.892 16 C -0.140 4.140 17 C -0.135 4.135 18 C -0.113 4.113 19 C 0.164 3.836 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.133 4.133 24 H 0.265 0.735 25 H 0.129 0.871 26 H 0.029 0.971 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.141 0.859 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.142 -12.241 -6.069 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.186 4.186 3 Si 0.741 3.259 4 H -0.250 1.250 5 H -0.255 1.255 6 H -0.170 1.170 7 C -0.375 4.375 8 H 0.128 0.872 9 N -0.226 5.226 10 C 0.124 3.876 11 N -0.244 5.244 12 N -0.073 5.073 13 N -0.088 5.088 14 N -0.159 5.159 15 C 0.005 3.995 16 C -0.179 4.179 17 C -0.173 4.173 18 C -0.151 4.151 19 C 0.061 3.939 20 C -0.166 4.166 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.173 4.173 24 H 0.075 0.925 25 H 0.147 0.853 26 H 0.048 0.952 27 H 0.147 0.853 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.647 -11.032 -6.361 14.364 hybrid contribution -0.592 1.297 0.393 1.479 sum 6.055 -9.734 -5.968 12.924 Atomic orbital electron populations 1.69850 1.06227 1.27283 1.51088 1.25454 0.95403 0.98717 0.99029 0.86507 0.78884 0.83058 0.77459 1.24991 1.25473 1.16966 1.18734 0.85952 0.95215 1.37595 0.87172 1.41469 1.11762 1.28699 1.40701 1.21669 0.91492 0.91447 0.82944 1.74938 1.23470 1.05740 1.20207 1.77775 1.14758 1.21195 0.93560 1.82088 1.12971 0.95187 1.18519 1.52454 1.38421 1.18057 1.06999 1.22858 0.94201 0.88471 0.93963 1.23310 0.95966 1.01637 0.96946 1.22899 0.96813 0.98899 0.98655 1.23251 0.99695 1.01888 0.90262 1.21744 0.90706 0.86949 0.94539 1.22734 1.01545 0.93099 0.99220 1.22402 1.02125 0.97085 0.93161 1.22253 1.00817 0.93820 0.98325 1.22489 1.00685 0.99011 0.95066 0.92519 0.85323 0.95192 0.85276 0.87904 0.91928 0.84083 0.91157 0.91565 0.91464 0.90446 0.90020 0.90323 0.90289 0.92819 0.91299 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.47 13.96 21.64 0.30 -52.16 16 2 C 0.01 0.83 5.34 84.87 0.45 1.28 16 3 Si 0.91 50.65 23.64 68.60 1.62 52.27 16 4 H -0.32 -18.93 5.82 99.48 0.58 -18.35 16 5 H -0.32 -18.68 7.11 99.48 0.71 -17.98 16 6 H -0.24 -13.84 6.35 99.48 0.63 -13.21 16 7 C -0.25 -12.16 8.48 84.03 0.71 -11.45 16 8 H 0.11 5.52 6.90 -2.91 -0.02 5.50 16 9 N -0.50 -21.81 2.40 -496.55 -1.19 -23.00 16 10 C 0.49 22.45 4.82 260.63 1.26 23.70 16 11 N -0.38 -19.46 7.75 -58.67 -0.45 -19.91 16 12 N -0.08 -3.82 12.26 37.02 0.45 -3.36 16 13 N -0.10 -4.46 12.45 37.02 0.46 -4.00 16 14 N -0.36 -14.87 3.77 -326.21 -1.23 -16.10 16 15 C 0.11 3.43 4.87 45.58 0.22 3.66 16 16 C -0.14 -4.30 7.88 31.12 0.25 -4.06 16 17 C -0.14 -3.45 7.73 31.12 0.24 -3.20 16 18 C -0.11 -2.56 7.67 31.18 0.24 -2.33 16 19 C 0.16 5.60 3.38 45.72 0.15 5.76 16 20 C -0.13 -3.45 6.39 31.67 0.20 -3.24 16 21 C -0.11 -2.39 6.91 31.88 0.22 -2.17 16 22 C -0.11 -2.97 6.83 31.67 0.22 -2.75 16 23 C -0.13 -4.36 6.28 31.32 0.20 -4.17 16 24 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.13 3.86 8.14 -2.39 -0.02 3.84 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.95 7.26 -2.39 -0.02 1.94 16 30 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 2.19 7.92 -2.38 -0.02 2.17 16 33 H 0.07 2.13 6.38 -2.39 -0.02 2.11 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.96 7.37 -2.39 -0.02 1.94 16 Total: -1.00 -68.18 313.95 5.15 -63.03 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 0.82 Total: 2.22 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 4.36 Total: 1.02 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -1.66 Total: -118.54 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 1.62 Total: 52.27 kcal Total: -68.18 5.15 -63.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333731389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.523 kcal (2) G-P(sol) polarization free energy of solvation -68.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds