Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99989 * 2 1 4 4 C 1.50700 * 109.47343 * 179.97438 * 3 2 1 5 5 N 1.31782 * 119.08449 * 90.00000 * 4 3 2 6 6 C 1.32553 * 121.01443 * 179.97438 * 5 4 3 7 7 C 1.38116 * 119.19480 * 0.25897 * 6 5 4 8 8 C 1.39620 * 118.33302 * 359.52625 * 7 6 5 9 9 N 1.38551 * 120.53118 * 180.21936 * 8 7 6 10 10 C 1.46501 * 119.99726 * 0.25570 * 9 8 7 11 11 H 1.08997 * 110.01493 * 325.69705 * 10 9 8 12 12 C 1.54270 * 110.03293 * 87.09026 * 10 9 8 13 13 C 1.55011 * 104.13468 * 95.68663 * 12 10 9 14 14 C 1.54889 * 102.75911 * 37.94918 * 13 12 10 15 15 H 1.08999 * 110.59663 * 80.77440 * 14 13 12 16 16 C 1.50698 * 110.48480 * 203.37027 * 14 13 12 17 17 H 1.07995 * 119.99827 * 114.78030 * 16 14 13 18 18 C 1.37873 * 120.00003 * 294.76930 * 16 14 13 19 19 N 1.31516 * 120.00442 * 180.02562 * 18 16 14 20 20 Si 1.86799 * 120.00052 * 0.02562 * 18 16 14 21 21 H 1.48506 * 109.47367 * 89.99540 * 20 18 16 22 22 H 1.48501 * 109.47643 * 209.99742 * 20 18 16 23 23 H 1.48501 * 109.47439 * 329.99839 * 20 18 16 24 24 C 1.53877 * 110.03014 * 204.30556 * 10 9 8 25 25 N 1.31750 * 119.08347 * 270.02528 * 4 3 2 26 26 H 1.08994 * 109.46943 * 60.00075 * 1 2 3 27 27 H 1.09000 * 109.46545 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.46948 * 299.99375 * 1 2 3 29 29 H 1.09006 * 109.46771 * 60.00276 * 3 2 1 30 30 H 1.08998 * 109.47488 * 300.00110 * 3 2 1 31 31 H 1.08002 * 120.39954 * 179.97438 * 6 5 4 32 32 H 1.08005 * 120.82980 * 179.74000 * 7 6 5 33 33 H 0.97000 * 120.00260 * 180.25211 * 9 8 7 34 34 H 1.09005 * 110.48521 * 214.35237 * 12 10 9 35 35 H 1.09002 * 110.48435 * 336.99423 * 12 10 9 36 36 H 1.09001 * 110.75980 * 279.62594 * 13 12 10 37 37 H 1.08998 * 110.74039 * 156.26446 * 13 12 10 38 38 H 0.96988 * 120.00417 * 180.02562 * 19 18 16 39 39 H 1.09004 * 110.03017 * 0.02562 * 24 10 9 40 40 H 1.09002 * 110.02788 * 121.42691 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.1516 1.1358 -1.1507 6 6 5.4723 1.0317 -1.1948 7 6 6.1831 0.9707 -0.0122 8 6 5.4758 1.0317 1.1900 9 7 6.1433 0.9790 2.4029 10 6 7.6036 0.8639 2.4309 11 1 7.9462 0.2580 1.5921 12 6 8.2454 2.2653 2.3675 13 6 8.5159 2.6252 3.8508 14 6 8.9587 1.2701 4.4564 15 1 10.0078 1.0753 4.2341 16 6 8.7246 1.2560 5.9450 17 1 8.0030 0.5752 6.3717 18 6 9.4318 2.1121 6.7622 19 7 9.2279 2.0996 8.0614 20 14 10.6796 3.2901 6.0241 21 1 10.0094 4.5700 5.6806 22 1 11.7613 3.5464 7.0087 23 1 11.2603 2.6904 4.7958 24 6 8.0571 0.2312 3.7582 25 7 4.1504 1.1357 1.1523 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 5.9859 0.9905 -2.1440 32 1 7.2595 0.8815 -0.0173 33 1 5.6439 1.0183 3.2335 34 1 9.1793 2.2322 1.8063 35 1 7.5556 2.9810 1.9202 36 1 7.6070 2.9852 4.3330 37 1 9.3144 3.3629 3.9296 38 1 9.7252 2.7021 8.6362 39 1 7.1906 0.0093 4.3813 40 1 8.6205 -0.6814 3.5634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333766120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = 3.373833 kcal Electronic energy + Delta-G solvation = -21055.174830 eV Core-core repulsion = 17869.995540 eV Total energy + Delta-G solvation = -3185.179290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93780 -38.47363 -37.80970 -35.08612 -33.15268 -32.38625 -30.95054 -28.64938 -28.19159 -27.56240 -26.00043 -23.82977 -23.68165 -22.21966 -19.89459 -19.43544 -17.91840 -17.51049 -16.82510 -16.71269 -15.76920 -15.68933 -15.10364 -15.09254 -14.97585 -14.51976 -14.00475 -13.80222 -12.98442 -12.77535 -12.69834 -12.53241 -12.49211 -12.11250 -11.61900 -11.33876 -11.08668 -10.82521 -10.72975 -10.57212 -10.29412 -10.07386 -9.92868 -9.85201 -9.73501 -9.53791 -9.15286 -9.09518 -8.60083 -7.98495 -6.12767 -4.12446 0.99337 1.46624 3.05744 3.23942 3.32902 3.34186 3.41576 3.99806 4.33388 4.36487 4.43115 4.78472 4.98853 5.06377 5.07896 5.11644 5.17627 5.22751 5.26991 5.28270 5.40742 5.44832 5.55545 5.70647 5.88511 6.01982 6.12324 6.22872 6.31149 6.37572 6.51175 6.64405 6.77138 6.86495 6.93404 7.00701 7.36628 7.45579 7.68882 7.73514 8.33955 8.45339 8.90365 9.49566 11.00392 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.003567 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.044881 B = 7846.838881 C = 8370.633087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.135 3.865 4 C 0.358 3.642 5 N -0.557 5.557 6 C 0.171 3.829 7 C -0.291 4.291 8 C 0.443 3.557 9 N -0.690 5.690 10 C 0.144 3.856 11 H 0.077 0.923 12 C -0.140 4.140 13 C -0.127 4.127 14 C 0.012 3.988 15 H 0.035 0.965 16 C -0.512 4.512 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.264 1.264 24 C -0.112 4.112 25 N -0.567 5.567 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.143 0.857 33 H 0.411 0.589 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.264 0.736 39 H 0.072 0.928 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 -1.112 -17.967 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.057 3.943 4 C 0.087 3.913 5 N -0.278 5.278 6 C 0.010 3.990 7 C -0.320 4.320 8 C 0.198 3.802 9 N -0.320 5.320 10 C 0.039 3.961 11 H 0.095 0.905 12 C -0.178 4.178 13 C -0.165 4.165 14 C -0.007 4.007 15 H 0.053 0.947 16 C -0.550 4.550 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.710 3.290 21 H -0.204 1.204 22 H -0.221 1.221 23 H -0.189 1.189 24 C -0.150 4.150 25 N -0.293 5.293 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.181 0.819 32 H 0.161 0.839 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.571 -1.164 -17.767 20.706 hybrid contribution 1.332 0.941 0.150 1.638 sum -9.239 -0.224 -17.617 19.893 Atomic orbital electron populations 1.22765 0.80343 1.03001 1.00175 1.87932 1.20029 1.26532 1.95496 1.20926 0.85546 0.85798 1.02018 1.22181 0.95855 0.90129 0.83121 1.68145 1.10101 1.19953 1.29580 1.22812 0.89252 0.89012 0.97892 1.22235 1.02601 1.14138 0.92988 1.18615 0.87856 0.86377 0.87392 1.45072 1.06779 1.75500 1.04693 1.21935 0.77205 0.96925 1.00046 0.90482 1.22919 0.99750 0.95905 0.99267 1.22949 1.00846 0.99971 0.92733 1.19980 0.94917 0.89798 0.95973 0.94687 1.21035 1.23651 1.21504 0.88806 0.90850 1.25006 0.96509 0.96940 0.94641 1.69895 1.42017 1.38513 1.03452 0.86895 0.81463 0.81759 0.78921 1.20428 1.22113 1.18920 1.22426 1.00663 0.98864 0.93048 1.67699 1.08035 1.22501 1.31070 0.93836 0.89422 0.93727 0.90692 0.90629 0.81898 0.83878 0.75204 0.91410 0.92272 0.91387 0.93419 0.92633 0.90940 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.86 10.69 -35.23 -0.38 -5.24 16 3 C 0.14 1.61 6.37 36.01 0.23 1.84 16 4 C 0.36 5.30 7.27 -157.24 -1.14 4.16 16 5 N -0.56 -7.94 10.33 -10.81 -0.11 -8.05 16 6 C 0.17 2.09 11.29 -17.29 -0.20 1.90 16 7 C -0.29 -3.76 9.29 -39.11 -0.36 -4.12 16 8 C 0.44 6.71 7.71 -154.77 -1.19 5.52 16 9 N -0.69 -10.39 5.19 -52.69 -0.27 -10.66 16 10 C 0.14 2.13 2.93 -66.81 -0.20 1.93 16 11 H 0.08 1.00 6.49 -51.93 -0.34 0.66 16 12 C -0.14 -2.17 6.55 -25.00 -0.16 -2.34 16 13 C -0.13 -2.51 5.30 -24.67 -0.13 -2.64 16 14 C 0.01 0.27 2.28 -90.11 -0.21 0.06 16 15 H 0.04 0.77 7.06 -51.93 -0.37 0.40 16 16 C -0.51 -13.65 9.04 -34.44 -0.31 -13.96 16 17 H 0.07 2.13 7.79 -52.49 -0.41 1.72 16 18 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 19 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 20 Si 0.88 21.10 24.65 -169.99 -4.19 16.91 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.26 -5.98 6.47 56.52 0.37 -5.61 16 24 C -0.11 -1.97 6.13 -25.61 -0.16 -2.13 16 25 N -0.57 -9.09 10.37 -9.97 -0.10 -9.19 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.14 1.57 6.35 -52.48 -0.33 1.24 16 33 H 0.41 6.41 8.43 -40.82 -0.34 6.06 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 37 H 0.05 0.97 5.28 -51.93 -0.27 0.70 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.07 1.35 7.13 -51.93 -0.37 0.98 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -31.47 324.49 -8.03 -39.50 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.82 Total: 4.59 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.81 Total: -6.52 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.29 Total: -54.14 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.38 Total: -5.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.19 Total: 16.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.47 -8.03 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333766120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.873 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds