Wall clock time and date at job start Mon Mar 30 2020 01:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35035 * 126.39739 * 2 1 4 4 N 1.30502 * 108.69990 * 179.82751 * 3 2 1 5 5 C 1.34128 * 109.25644 * 0.44323 * 4 3 2 6 6 C 1.34673 * 108.01546 * 359.72677 * 5 4 3 7 7 C 1.50704 * 126.58681 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47381 * 84.95382 * 7 6 5 9 9 O 1.21284 * 119.99949 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00167 * 179.97438 * 8 7 6 11 11 C 1.46924 * 120.62977 * 359.72272 * 10 8 7 12 12 C 1.53632 * 108.54331 * 126.36700 * 11 10 8 13 13 C 1.53042 * 109.23733 * 54.85645 * 12 11 10 14 14 C 1.53043 * 109.53934 * 298.50905 * 13 12 11 15 15 H 1.08998 * 109.49600 * 301.41730 * 14 13 12 16 16 C 1.50697 * 109.52080 * 181.33551 * 14 13 12 17 17 H 1.08000 * 120.00423 * 0.14636 * 16 14 13 18 18 C 1.37881 * 119.99812 * 180.14593 * 16 14 13 19 19 N 1.31515 * 119.99733 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00037 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46588 * 60.00313 * 20 18 16 22 22 H 1.48501 * 109.46868 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47260 * 300.00340 * 20 18 16 24 24 C 1.46933 * 120.63239 * 180.02562 * 10 8 7 25 25 H 1.08999 * 109.46892 * 269.69015 * 1 2 3 26 26 H 1.09000 * 109.46803 * 29.68188 * 1 2 3 27 27 H 1.09000 * 109.47214 * 149.68982 * 1 2 3 28 28 H 1.08000 * 125.65158 * 359.97438 * 3 2 1 29 29 H 1.08000 * 125.99367 * 179.72373 * 5 4 3 30 30 H 1.09004 * 109.46996 * 204.95659 * 7 6 5 31 31 H 1.09004 * 109.46791 * 324.95088 * 7 6 5 32 32 H 1.09001 * 109.58750 * 246.19571 * 11 10 8 33 33 H 1.08999 * 109.58601 * 6.62685 * 11 10 8 34 34 H 1.08995 * 109.63376 * 294.86847 * 12 11 10 35 35 H 1.09003 * 109.42819 * 174.72397 * 12 11 10 36 36 H 1.09002 * 109.45571 * 178.48915 * 13 12 11 37 37 H 1.08993 * 109.45156 * 58.52681 * 13 12 11 38 38 H 0.96999 * 119.99595 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.58175 * 353.37748 * 24 10 8 40 40 H 1.09000 * 109.58310 * 113.65744 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 0.0037 5 6 3.5461 -0.6505 -0.0036 6 6 2.2772 -1.1018 -0.0061 7 6 1.8363 -2.5429 -0.0134 8 6 1.8086 -3.0669 1.3992 9 8 2.1161 -2.3415 2.3213 10 7 1.4412 -4.3414 1.6381 11 6 1.0590 -5.2301 0.5322 12 6 1.9076 -6.5080 0.6169 13 6 1.7466 -7.1291 2.0063 14 6 2.2485 -6.1470 3.0673 15 1 3.2937 -5.9058 2.8743 16 6 2.1202 -6.7717 4.4326 17 1 1.7228 -7.7708 4.5342 18 6 2.5102 -6.0678 5.5522 19 7 2.9937 -4.8511 5.4286 20 14 2.3505 -6.8419 7.2448 21 1 3.1639 -8.0832 7.3000 22 1 2.8352 -5.8870 8.2735 23 1 0.9264 -7.1713 7.5062 24 6 1.4087 -4.8666 3.0100 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 0.8928 -0.5089 27 1 -0.3633 -0.8872 -0.5186 28 1 1.9335 2.1143 -0.0004 29 1 4.4369 -1.2612 -0.0070 30 1 0.8391 -2.6155 -0.4475 31 1 2.5347 -3.1334 -0.6064 32 1 0.0022 -5.4837 0.6158 33 1 1.2429 -4.7300 -0.4186 34 1 2.9560 -6.2634 0.4470 35 1 1.5716 -7.2170 -0.1398 36 1 2.3261 -8.0507 2.0614 37 1 0.6945 -7.3506 2.1852 38 1 3.2677 -4.3557 6.2162 39 1 1.8233 -4.1265 3.6943 40 1 0.3795 -5.0888 3.2918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334741047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:24 Heat of formation + Delta-G solvation = 21.860812 kcal Electronic energy + Delta-G solvation = -21963.119063 eV Core-core repulsion = 18778.741428 eV Total energy + Delta-G solvation = -3184.377635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95923 -39.34333 -36.68908 -33.97490 -33.44947 -32.07639 -31.60832 -29.75865 -27.21991 -26.90296 -25.04694 -24.20652 -21.85595 -21.31128 -20.52578 -19.42633 -18.20059 -16.97997 -16.85529 -16.10493 -15.45245 -15.12620 -14.93291 -14.57152 -14.12480 -13.71121 -13.56094 -13.30029 -12.94998 -12.91774 -12.73898 -12.57597 -12.51740 -12.31693 -11.91226 -11.66325 -11.01127 -10.91474 -10.54536 -10.42710 -10.24519 -9.91007 -9.82023 -9.48818 -9.28301 -9.12647 -8.92324 -8.43523 -8.14496 -7.75761 -5.99541 -4.08989 2.12883 2.85313 3.22276 3.31243 3.33581 3.37848 3.38842 3.79387 4.42556 4.60063 4.68044 4.80947 4.94786 5.03883 5.10917 5.26201 5.28553 5.30590 5.42652 5.45462 5.61371 5.62603 5.92281 5.95706 6.13628 6.28230 6.45246 6.57819 6.64473 6.82043 6.89882 6.95641 7.13453 7.27021 7.30339 7.63490 7.86471 7.99414 8.21849 8.24432 8.38327 8.86712 8.95726 9.56794 11.05482 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.004796 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.917403 B = 5836.998113 C = 6570.824000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.456 5.456 3 C 0.175 3.825 4 N -0.494 5.494 5 C -0.011 4.011 6 C 0.001 3.999 7 C -0.066 4.066 8 C 0.503 3.497 9 O -0.525 6.525 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.523 4.523 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.113 3.887 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.202 0.798 29 H 0.167 0.833 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 5.224 -14.746 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.140 5.140 3 C -0.107 4.107 4 N -0.212 5.212 5 C -0.159 4.159 6 C -0.114 4.114 7 C -0.107 4.107 8 C 0.289 3.711 9 O -0.401 6.401 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.007 4.007 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.219 0.781 29 H 0.184 0.816 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.518 6.300 -14.108 16.769 hybrid contribution -0.930 -1.004 0.970 1.678 sum -7.449 5.296 -13.138 16.004 Atomic orbital electron populations 1.22008 0.77065 1.04112 1.03875 1.45157 1.07336 1.06731 1.54732 1.24796 0.85747 0.93169 1.06967 1.70230 1.19373 1.12053 1.19543 1.21962 0.95673 0.90956 1.07273 1.20510 0.91293 0.88523 1.11026 1.20126 1.03273 0.90195 0.97116 1.20273 0.78321 0.82284 0.90214 1.90753 1.47407 1.56403 1.45530 1.48527 1.65810 1.10090 1.09703 1.21744 0.98664 0.91736 0.89458 1.22025 0.99984 0.96133 0.99082 1.21624 1.00438 0.99258 0.93517 1.18963 0.95427 0.90375 0.93098 0.95292 1.21037 1.43392 1.01088 0.90676 0.92445 1.25056 0.94783 0.94903 0.99246 1.69877 1.41587 1.10289 1.29913 0.86659 0.78415 0.79052 0.83895 1.20250 1.21251 1.20274 1.22283 0.99075 1.00078 0.79250 0.90360 0.89519 0.89947 0.78139 0.81611 0.89107 0.87074 0.92050 0.91214 0.92005 0.92250 0.93009 0.93246 0.92563 0.85996 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 11.00 59.85 0.66 1.28 16 2 N -0.46 -5.96 3.15 -121.36 -0.38 -6.34 16 3 C 0.17 2.35 12.56 -90.38 -1.14 1.22 16 4 N -0.49 -8.32 11.25 -14.67 -0.17 -8.49 16 5 C -0.01 -0.18 11.79 -17.81 -0.21 -0.39 16 6 C 0.00 0.02 5.45 -81.60 -0.44 -0.43 16 7 C -0.07 -0.89 4.38 -29.04 -0.13 -1.02 16 8 C 0.50 9.65 7.69 -10.99 -0.08 9.57 16 9 O -0.53 -12.84 15.45 5.55 0.09 -12.75 16 10 N -0.61 -11.60 2.97 -172.48 -0.51 -12.11 16 11 C 0.11 1.53 6.37 -3.48 -0.02 1.51 16 12 C -0.13 -2.03 6.10 -26.38 -0.16 -2.19 16 13 C -0.11 -2.13 5.11 -26.69 -0.14 -2.27 16 14 C 0.04 0.99 2.25 -91.63 -0.21 0.78 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.11 8.57 -34.44 -0.29 -14.40 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -25.83 11.39 55.43 0.63 -25.20 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.11 2.70 5.40 -3.69 -0.02 2.68 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.59 7.12 -51.93 -0.37 0.22 16 28 H 0.20 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.17 2.59 8.06 -52.49 -0.42 2.16 16 30 H 0.09 0.95 6.88 -51.93 -0.36 0.59 16 31 H 0.11 1.27 7.70 -51.93 -0.40 0.87 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.12 3.45 5.12 -51.93 -0.27 3.19 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -35.06 325.23 -8.63 -43.69 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.89 Total: 2.04 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.28 Total: -2.01 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.43 Total: -52.14 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.06 -8.63 -43.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334741047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.551 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds