Wall clock time and date at job start Mon Mar 30 2020 01:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35035 * 126.39739 * 2 1 4 4 N 1.30502 * 108.69990 * 179.82751 * 3 2 1 5 5 C 1.34128 * 109.25644 * 0.44323 * 4 3 2 6 6 C 1.34673 * 108.01546 * 359.72677 * 5 4 3 7 7 C 1.50704 * 126.58681 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47381 * 84.95382 * 7 6 5 9 9 O 1.21284 * 119.99949 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00167 * 179.97438 * 8 7 6 11 11 C 1.46924 * 120.62977 * 359.72272 * 10 8 7 12 12 C 1.53632 * 108.54331 * 126.36700 * 11 10 8 13 13 C 1.53042 * 109.23733 * 54.85645 * 12 11 10 14 14 C 1.53043 * 109.53934 * 298.50905 * 13 12 11 15 15 H 1.08998 * 109.49600 * 301.41730 * 14 13 12 16 16 C 1.50697 * 109.52080 * 181.33551 * 14 13 12 17 17 H 1.08000 * 120.00423 * 0.14636 * 16 14 13 18 18 C 1.37881 * 119.99812 * 180.14593 * 16 14 13 19 19 N 1.31515 * 119.99733 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00037 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46588 * 60.00313 * 20 18 16 22 22 H 1.48501 * 109.46868 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47260 * 300.00340 * 20 18 16 24 24 C 1.46933 * 120.63239 * 180.02562 * 10 8 7 25 25 H 1.08999 * 109.46892 * 269.69015 * 1 2 3 26 26 H 1.09000 * 109.46803 * 29.68188 * 1 2 3 27 27 H 1.09000 * 109.47214 * 149.68982 * 1 2 3 28 28 H 1.08000 * 125.65158 * 359.97438 * 3 2 1 29 29 H 1.08000 * 125.99367 * 179.72373 * 5 4 3 30 30 H 1.09004 * 109.46996 * 204.95659 * 7 6 5 31 31 H 1.09004 * 109.46791 * 324.95088 * 7 6 5 32 32 H 1.09001 * 109.58750 * 246.19571 * 11 10 8 33 33 H 1.08999 * 109.58601 * 6.62685 * 11 10 8 34 34 H 1.08995 * 109.63376 * 294.86847 * 12 11 10 35 35 H 1.09003 * 109.42819 * 174.72397 * 12 11 10 36 36 H 1.09002 * 109.45571 * 178.48915 * 13 12 11 37 37 H 1.08993 * 109.45156 * 58.52681 * 13 12 11 38 38 H 0.96999 * 119.99595 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.58175 * 353.37748 * 24 10 8 40 40 H 1.09000 * 109.58310 * 113.65744 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 0.0037 5 6 3.5461 -0.6505 -0.0036 6 6 2.2772 -1.1018 -0.0061 7 6 1.8363 -2.5429 -0.0134 8 6 1.8086 -3.0669 1.3992 9 8 2.1161 -2.3415 2.3213 10 7 1.4412 -4.3414 1.6381 11 6 1.0590 -5.2301 0.5322 12 6 1.9076 -6.5080 0.6169 13 6 1.7466 -7.1291 2.0063 14 6 2.2485 -6.1470 3.0673 15 1 3.2937 -5.9058 2.8743 16 6 2.1202 -6.7717 4.4326 17 1 1.7228 -7.7708 4.5342 18 6 2.5102 -6.0678 5.5522 19 7 2.9937 -4.8511 5.4286 20 14 2.3505 -6.8419 7.2448 21 1 3.1639 -8.0832 7.3000 22 1 2.8352 -5.8870 8.2735 23 1 0.9264 -7.1713 7.5062 24 6 1.4087 -4.8666 3.0100 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 0.8928 -0.5089 27 1 -0.3633 -0.8872 -0.5186 28 1 1.9335 2.1143 -0.0004 29 1 4.4369 -1.2612 -0.0070 30 1 0.8391 -2.6155 -0.4475 31 1 2.5347 -3.1334 -0.6064 32 1 0.0022 -5.4837 0.6158 33 1 1.2429 -4.7300 -0.4186 34 1 2.9560 -6.2634 0.4470 35 1 1.5716 -7.2170 -0.1398 36 1 2.3261 -8.0507 2.0614 37 1 0.6945 -7.3506 2.1852 38 1 3.2677 -4.3557 6.2162 39 1 1.8233 -4.1265 3.6943 40 1 0.3795 -5.0888 3.2918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334741047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:23 Heat of formation + Delta-G solvation = -0.845788 kcal Electronic energy + Delta-G solvation = -21964.103695 eV Core-core repulsion = 18778.741428 eV Total energy + Delta-G solvation = -3185.362267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.02116 -40.85726 -38.29387 -35.33461 -34.92972 -33.61211 -32.94075 -31.43610 -28.44927 -27.76390 -26.89618 -25.72788 -23.42226 -22.39615 -21.88589 -20.80686 -19.62489 -18.56536 -18.04565 -17.78764 -16.77240 -16.47031 -16.36161 -16.22276 -15.31823 -15.14130 -14.77936 -14.68996 -14.47648 -14.19447 -13.95603 -13.87255 -13.69905 -13.46200 -13.29150 -12.92396 -12.86114 -12.68254 -12.26421 -12.25411 -11.78373 -11.61271 -11.11011 -10.95579 -10.92579 -10.69735 -10.52096 -10.41060 -9.36730 -9.28903 -8.11705 -6.29267 1.03381 1.39239 1.40615 1.49098 1.76777 1.96788 2.15943 2.37436 2.44817 3.16604 3.57644 3.82453 3.90542 3.99897 4.08485 4.15310 4.22219 4.33332 4.38223 4.47785 4.55145 4.63981 4.70950 4.78915 4.83964 4.86171 4.92444 5.13140 5.28415 5.32121 5.37887 5.40275 5.54923 5.67442 5.77877 5.91757 6.01802 6.33077 6.35436 6.72858 6.84504 7.13227 7.38703 7.42743 8.90873 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.004796 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.917403 B = 5836.998113 C = 6570.824000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.456 5.456 3 C 0.180 3.820 4 N -0.539 5.539 5 C -0.046 4.046 6 C -0.008 4.008 7 C -0.049 4.049 8 C 0.496 3.504 9 O -0.591 6.591 10 N -0.610 5.610 11 C 0.101 3.899 12 C -0.128 4.128 13 C -0.106 4.106 14 C 0.038 3.962 15 H -0.016 1.016 16 C -0.537 4.537 17 H 0.062 0.938 18 C 0.009 3.991 19 N -0.916 5.916 20 Si 0.956 3.044 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.265 1.265 24 C 0.127 3.873 25 H 0.066 0.934 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.242 0.758 29 H 0.159 0.841 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.051 0.949 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.258 0.742 39 H 0.071 0.929 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 4.428 -17.338 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.138 5.138 3 C -0.102 4.102 4 N -0.257 5.257 5 C -0.194 4.194 6 C -0.124 4.124 7 C -0.090 4.090 8 C 0.285 3.715 9 O -0.471 6.471 10 N -0.342 5.342 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.144 4.144 14 C 0.018 3.982 15 H 0.002 0.998 16 C -0.576 4.576 17 H 0.080 0.920 18 C -0.190 4.190 19 N -0.555 5.555 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.217 1.217 23 H -0.190 1.190 24 C 0.004 3.996 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.121 0.879 28 H 0.258 0.742 29 H 0.177 0.823 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.976 5.454 -16.752 19.772 hybrid contribution -0.189 -0.739 1.779 1.935 sum -9.165 4.714 -14.973 18.177 Atomic orbital electron populations 1.22366 0.74273 1.07068 1.04011 1.45439 1.09016 1.05872 1.53515 1.25592 0.85045 0.94874 1.04736 1.70162 1.21721 1.12312 1.21536 1.22129 0.96675 0.91487 1.09066 1.20692 0.91189 0.89824 1.10680 1.20131 1.06567 0.89192 0.93068 1.21294 0.76528 0.81623 0.92047 1.90728 1.50123 1.58118 1.48177 1.48541 1.65556 1.11032 1.09105 1.22176 0.99587 0.90740 0.89486 1.22005 1.00018 0.97389 0.97218 1.21516 1.00365 0.97883 0.94599 1.18907 0.93172 0.92059 0.94015 0.99793 1.21529 1.42513 1.01267 0.92260 0.91989 1.25903 0.94621 0.95201 1.03283 1.70099 1.43138 1.11878 1.30367 0.85639 0.78938 0.78173 0.79121 1.19257 1.21684 1.19023 1.21623 0.97828 0.98442 0.81696 0.91507 0.85864 0.87913 0.74214 0.82330 0.84607 0.84315 0.89895 0.86358 0.92975 0.87673 0.93296 0.92449 0.93307 0.91052 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 11.00 127.77 1.41 2.28 16 2 N -0.46 -10.97 3.15 -537.88 -1.70 -12.66 16 3 C 0.18 4.58 12.56 180.26 2.26 6.85 16 4 N -0.54 -18.29 11.25 -200.31 -2.25 -20.55 16 5 C -0.05 -1.57 11.79 83.52 0.98 -0.59 16 6 C -0.01 -0.23 5.45 40.95 0.22 -0.01 16 7 C -0.05 -1.19 4.38 29.10 0.13 -1.06 16 8 C 0.50 18.84 7.69 87.66 0.67 19.52 16 9 O -0.59 -30.22 15.45 -3.04 -0.05 -30.27 16 10 N -0.61 -22.76 2.97 -817.99 -2.43 -25.18 16 11 C 0.10 2.46 6.37 86.51 0.55 3.01 16 12 C -0.13 -3.44 6.10 30.82 0.19 -3.25 16 13 C -0.11 -3.95 5.11 30.62 0.16 -3.79 16 14 C 0.04 1.89 2.25 -11.45 -0.03 1.87 16 15 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 16 C -0.54 -29.72 8.57 25.60 0.22 -29.50 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.01 0.52 5.30 84.66 0.45 0.97 16 19 N -0.92 -56.89 11.39 21.45 0.24 -56.64 16 20 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.13 6.24 5.40 86.37 0.47 6.71 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 1.00 7.12 -2.39 -0.02 0.98 16 28 H 0.24 3.69 8.06 -2.91 -0.02 3.66 16 29 H 0.16 5.28 8.06 -2.91 -0.02 5.25 16 30 H 0.14 2.06 6.88 -2.39 -0.02 2.04 16 31 H 0.14 2.62 7.70 -2.39 -0.02 2.60 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.12 1.78 5.93 -2.39 -0.01 1.76 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 38 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.07 4.30 5.12 -2.39 -0.01 4.29 16 40 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -85.33 325.23 4.56 -80.77 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.03 Total: 14.78 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 7.68 Total: 3.01 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -6.13 Total: -115.04 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.05 Total: -30.27 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -85.33 4.56 -80.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334741047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.925 kcal (2) G-P(sol) polarization free energy of solvation -85.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds