Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50700 * 119.99932 * 2 1 4 4 N 1.46904 * 109.47518 * 124.94030 * 3 2 1 5 5 C 1.46896 * 110.99991 * 199.93055 * 4 3 2 6 6 C 1.50700 * 109.47213 * 66.04538 * 5 4 3 7 7 H 1.07997 * 120.00227 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00048 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00425 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99989 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47438 * 89.99690 * 10 8 6 12 12 H 1.48498 * 109.47437 * 209.99759 * 10 8 6 13 13 H 1.48505 * 109.47327 * 329.99859 * 10 8 6 14 14 C 1.38377 * 110.99563 * 75.97491 * 4 3 2 15 15 N 1.31469 * 126.44651 * 23.11692 * 14 4 3 16 16 N 1.28421 * 110.51347 * 179.81452 * 15 14 4 17 17 N 1.28911 * 110.31472 * 0.45833 * 16 15 14 18 18 N 1.35319 * 126.43600 * 203.42625 * 14 4 3 19 19 C 1.46502 * 127.37933 * 359.97438 * 18 14 4 20 20 C 1.53000 * 109.47467 * 95.59804 * 19 18 14 21 21 C 1.53776 * 113.61125 * 272.55591 * 20 19 18 22 22 C 1.53781 * 87.08044 * 220.01618 * 21 20 19 23 23 C 1.53773 * 113.61463 * 175.05789 * 20 19 18 24 24 H 1.07999 * 120.00608 * 5.05086 * 1 2 3 25 25 H 1.08008 * 120.00064 * 185.05458 * 1 2 3 26 26 H 1.07998 * 120.00551 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47131 * 244.94049 * 3 2 1 28 28 H 1.08997 * 109.47480 * 4.93907 * 3 2 1 29 29 H 1.09006 * 109.46796 * 186.04438 * 5 4 3 30 30 H 1.08998 * 109.47266 * 306.04398 * 5 4 3 31 31 H 0.96993 * 120.00428 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.46496 * 215.59804 * 19 18 14 33 33 H 1.09004 * 109.47078 * 335.59164 * 19 18 14 34 34 H 1.09002 * 112.84501 * 43.85972 * 20 19 18 35 35 H 1.09001 * 113.61840 * 334.56560 * 21 20 19 36 36 H 1.09006 * 113.61510 * 105.47423 * 21 20 19 37 37 H 1.08995 * 113.61641 * 270.88721 * 22 21 20 38 38 H 1.09000 * 113.61562 * 139.98146 * 22 21 20 39 39 H 1.09004 * 113.61516 * 254.53130 * 23 20 19 40 40 H 1.09002 * 113.61735 * 25.35044 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9952 1.3327 1.1353 5 6 3.3918 2.7099 1.4576 6 6 2.1932 3.4736 1.9589 7 1 1.2330 2.9846 2.0313 8 6 2.3227 4.7962 2.3261 9 7 1.2767 5.4629 2.7631 10 14 3.9837 5.6418 2.2015 11 1 4.1257 6.2588 0.8582 12 1 4.0821 6.6956 3.2431 13 1 5.0640 4.6432 2.4041 14 6 4.1037 0.5427 0.8862 15 7 4.5623 0.1904 -0.2944 16 7 5.6094 -0.5426 -0.1701 17 7 5.8874 -0.7181 1.0764 18 7 4.9161 -0.0171 1.8123 19 6 4.8072 0.0859 3.2697 20 6 4.0533 -1.1300 3.8120 21 6 2.5263 -0.9492 3.8320 22 6 2.5381 -1.6665 5.1922 23 6 3.9886 -1.1801 5.3476 24 1 -0.5401 0.9316 -0.0823 25 1 -0.5401 -0.9317 0.0824 26 1 1.8500 -0.9352 0.0004 27 1 2.6220 1.4021 -0.9310 28 1 1.3584 2.1317 0.0885 29 1 4.1619 2.6952 2.2289 30 1 3.7829 3.1941 0.5628 31 1 1.3677 6.3934 3.0210 32 1 5.8051 0.1194 3.7070 33 1 4.2657 0.9953 3.5302 34 1 4.3776 -2.0662 3.3578 35 1 2.2106 0.0925 3.8904 36 1 2.0104 -1.5057 3.0495 37 1 2.4467 -2.7499 5.1154 38 1 1.8520 -1.2335 5.9202 39 1 4.6534 -1.9229 5.7886 40 1 4.0742 -0.2017 5.8204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335386413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = 168.581576 kcal Electronic energy + Delta-G solvation = -22402.238773 eV Core-core repulsion = 19256.516179 eV Total energy + Delta-G solvation = -3145.722594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.56055 -38.93094 -37.71742 -34.51968 -33.34389 -32.69582 -30.84912 -28.98493 -27.89214 -25.58793 -25.43331 -24.10198 -22.36815 -22.06662 -20.70634 -19.46258 -19.38907 -17.43072 -16.88690 -16.27729 -15.79264 -15.38101 -15.06042 -14.83915 -14.51430 -14.03144 -13.75914 -13.16802 -12.87855 -12.61581 -12.42131 -12.37153 -12.23081 -11.94473 -11.77243 -11.37213 -11.16435 -11.03759 -11.02601 -10.65869 -10.62269 -10.45067 -10.29683 -10.18609 -9.94519 -9.80654 -9.56559 -9.06682 -8.84754 -8.14152 -6.32124 -4.34371 1.41651 2.06991 2.62293 2.69787 3.10793 3.17936 3.21397 4.08957 4.17661 4.43863 4.60547 4.62827 4.75708 4.89740 4.98069 5.08951 5.19281 5.24491 5.39103 5.55258 5.66026 5.70804 5.78975 5.81146 5.90283 5.92298 5.95961 6.08151 6.12400 6.20605 6.23148 6.38737 6.45214 6.49898 6.55480 6.93769 7.05298 7.12721 7.24591 7.55401 8.25844 8.73587 8.91381 9.25531 10.79338 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.007172 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.152954 B = 3903.318065 C = 4181.351606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.137 4.137 3 C 0.089 3.911 4 N -0.440 5.440 5 C 0.170 3.830 6 C -0.522 4.522 7 H 0.090 0.910 8 C 0.081 3.919 9 N -0.885 5.885 10 Si 0.868 3.132 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.437 3.563 15 N -0.371 5.371 16 N -0.042 5.042 17 N -0.106 5.106 18 N -0.376 5.376 19 C 0.135 3.865 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.142 4.142 23 C -0.128 4.128 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.114 0.886 29 H 0.031 0.969 30 H 0.007 0.993 31 H 0.268 0.732 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 -10.663 3.207 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.156 4.156 3 C -0.038 4.038 4 N -0.165 5.165 5 C 0.046 3.954 6 C -0.560 4.560 7 H 0.108 0.892 8 C -0.123 4.123 9 N -0.522 5.522 10 Si 0.694 3.306 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.194 1.194 14 C 0.071 3.929 15 N -0.230 5.230 16 N -0.038 5.038 17 N -0.093 5.093 18 N -0.174 5.174 19 C 0.013 3.987 20 C -0.145 4.145 21 C -0.165 4.165 22 C -0.180 4.180 23 C -0.166 4.166 24 H 0.119 0.881 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.049 0.951 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.965 -11.268 2.871 12.000 hybrid contribution 0.784 1.124 0.224 1.388 sum 3.748 -10.144 3.095 11.249 Atomic orbital electron populations 1.23747 0.95668 1.01730 1.01169 1.22754 0.95829 0.97754 0.99226 1.21361 0.94657 0.97193 0.90546 1.59012 1.06240 1.12789 1.38494 1.20435 0.98639 0.80350 0.95975 1.20789 0.95286 0.95292 1.44674 0.89169 1.24777 0.96313 0.96918 0.94319 1.69844 1.29241 1.10333 1.42789 0.86988 0.84735 0.80116 0.78713 1.19783 1.20626 1.19439 1.23616 0.90021 0.94747 0.84481 1.74857 1.08830 1.18768 1.20540 1.77788 1.07077 1.08953 1.10033 1.82411 1.10838 1.17390 0.98671 1.51375 1.21357 1.35673 1.09004 1.22152 1.02918 1.01030 0.72648 1.22949 0.97107 0.97664 0.96820 1.22992 0.94186 1.02534 0.96834 1.22791 0.96729 1.00100 0.98367 1.22872 0.97436 1.02107 0.94170 0.88090 0.88952 0.88686 0.91576 0.86825 0.95070 0.97552 0.92138 0.88554 0.86631 0.88900 0.88211 0.91808 0.90609 0.91083 0.91337 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 14.31 29.02 0.42 -2.22 16 2 C -0.14 -2.19 9.44 -36.02 -0.34 -2.53 16 3 C 0.09 1.60 5.08 -4.97 -0.03 1.58 16 4 N -0.44 -8.44 4.39 -177.59 -0.78 -9.22 16 5 C 0.17 3.70 3.61 -4.98 -0.02 3.68 16 6 C -0.52 -12.93 8.78 -34.44 -0.30 -13.23 16 7 H 0.09 2.41 7.56 -52.49 -0.40 2.01 16 8 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.89 -24.51 13.96 55.43 0.77 -23.74 16 10 Si 0.87 19.68 27.47 -169.99 -4.67 15.01 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 14 C 0.44 8.27 6.50 -320.41 -2.08 6.19 16 15 N -0.37 -7.40 10.99 30.10 0.33 -7.07 16 16 N -0.04 -0.83 13.38 60.35 0.81 -0.03 16 17 N -0.11 -1.94 13.93 60.35 0.84 -1.10 16 18 N -0.38 -6.47 3.69 -61.86 -0.23 -6.70 16 19 C 0.13 1.87 6.35 -4.04 -0.03 1.84 16 20 C -0.13 -1.53 3.96 -89.81 -0.36 -1.88 16 21 C -0.13 -1.64 7.63 -25.92 -0.20 -1.84 16 22 C -0.14 -1.48 8.08 -25.92 -0.21 -1.69 16 23 C -0.13 -1.27 7.64 -25.92 -0.20 -1.47 16 24 H 0.10 1.43 7.86 -52.49 -0.41 1.02 16 25 H 0.09 1.14 8.06 -52.48 -0.42 0.71 16 26 H 0.10 1.56 8.03 -52.49 -0.42 1.14 16 27 H 0.07 1.22 7.26 -51.93 -0.38 0.84 16 28 H 0.11 2.18 6.24 -51.93 -0.32 1.85 16 29 H 0.03 0.68 6.18 -51.93 -0.32 0.36 16 30 H 0.01 0.15 7.55 -51.93 -0.39 -0.24 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.12 1.71 6.74 -51.93 -0.35 1.36 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.47 7.90 -51.93 -0.41 1.06 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -27.48 334.05 -7.28 -34.76 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.95 Total: 2.63 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.44 Total: -9.58 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 1.74 Total: -47.85 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.48 -7.28 -34.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335386413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.339 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds