Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50700 * 119.99932 * 2 1 4 4 N 1.46904 * 109.47518 * 124.94030 * 3 2 1 5 5 C 1.46896 * 110.99991 * 199.93055 * 4 3 2 6 6 C 1.50700 * 109.47213 * 66.04538 * 5 4 3 7 7 H 1.07997 * 120.00227 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00048 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00425 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99989 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47438 * 89.99690 * 10 8 6 12 12 H 1.48498 * 109.47437 * 209.99759 * 10 8 6 13 13 H 1.48505 * 109.47327 * 329.99859 * 10 8 6 14 14 C 1.38377 * 110.99563 * 75.97491 * 4 3 2 15 15 N 1.31469 * 126.44651 * 23.11692 * 14 4 3 16 16 N 1.28421 * 110.51347 * 179.81452 * 15 14 4 17 17 N 1.28911 * 110.31472 * 0.45833 * 16 15 14 18 18 N 1.35319 * 126.43600 * 203.42625 * 14 4 3 19 19 C 1.46502 * 127.37933 * 359.97438 * 18 14 4 20 20 C 1.53000 * 109.47467 * 95.59804 * 19 18 14 21 21 C 1.53776 * 113.61125 * 272.55591 * 20 19 18 22 22 C 1.53781 * 87.08044 * 220.01618 * 21 20 19 23 23 C 1.53773 * 113.61463 * 175.05789 * 20 19 18 24 24 H 1.07999 * 120.00608 * 5.05086 * 1 2 3 25 25 H 1.08008 * 120.00064 * 185.05458 * 1 2 3 26 26 H 1.07998 * 120.00551 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47131 * 244.94049 * 3 2 1 28 28 H 1.08997 * 109.47480 * 4.93907 * 3 2 1 29 29 H 1.09006 * 109.46796 * 186.04438 * 5 4 3 30 30 H 1.08998 * 109.47266 * 306.04398 * 5 4 3 31 31 H 0.96993 * 120.00428 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.46496 * 215.59804 * 19 18 14 33 33 H 1.09004 * 109.47078 * 335.59164 * 19 18 14 34 34 H 1.09002 * 112.84501 * 43.85972 * 20 19 18 35 35 H 1.09001 * 113.61840 * 334.56560 * 21 20 19 36 36 H 1.09006 * 113.61510 * 105.47423 * 21 20 19 37 37 H 1.08995 * 113.61641 * 270.88721 * 22 21 20 38 38 H 1.09000 * 113.61562 * 139.98146 * 22 21 20 39 39 H 1.09004 * 113.61516 * 254.53130 * 23 20 19 40 40 H 1.09002 * 113.61735 * 25.35044 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9952 1.3327 1.1353 5 6 3.3918 2.7099 1.4576 6 6 2.1932 3.4736 1.9589 7 1 1.2330 2.9846 2.0313 8 6 2.3227 4.7962 2.3261 9 7 1.2767 5.4629 2.7631 10 14 3.9837 5.6418 2.2015 11 1 4.1257 6.2588 0.8582 12 1 4.0821 6.6956 3.2431 13 1 5.0640 4.6432 2.4041 14 6 4.1037 0.5427 0.8862 15 7 4.5623 0.1904 -0.2944 16 7 5.6094 -0.5426 -0.1701 17 7 5.8874 -0.7181 1.0764 18 7 4.9161 -0.0171 1.8123 19 6 4.8072 0.0859 3.2697 20 6 4.0533 -1.1300 3.8120 21 6 2.5263 -0.9492 3.8320 22 6 2.5381 -1.6665 5.1922 23 6 3.9886 -1.1801 5.3476 24 1 -0.5401 0.9316 -0.0823 25 1 -0.5401 -0.9317 0.0824 26 1 1.8500 -0.9352 0.0004 27 1 2.6220 1.4021 -0.9310 28 1 1.3584 2.1317 0.0885 29 1 4.1619 2.6952 2.2289 30 1 3.7829 3.1941 0.5628 31 1 1.3677 6.3934 3.0210 32 1 5.8051 0.1194 3.7070 33 1 4.2657 0.9953 3.5302 34 1 4.3776 -2.0662 3.3578 35 1 2.2106 0.0925 3.8904 36 1 2.0104 -1.5057 3.0495 37 1 2.4467 -2.7499 5.1154 38 1 1.8520 -1.2335 5.9202 39 1 4.6534 -1.9229 5.7886 40 1 4.0742 -0.2017 5.8204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335386413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = 154.032969 kcal Electronic energy + Delta-G solvation = -22402.869648 eV Core-core repulsion = 19256.516179 eV Total energy + Delta-G solvation = -3146.353469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.04248 -39.91405 -39.25359 -35.84503 -35.02292 -34.30656 -32.43919 -30.31174 -29.51129 -26.94338 -26.49971 -25.33988 -24.07995 -23.34227 -22.23559 -20.79774 -20.34361 -19.19708 -18.33818 -17.73512 -17.32375 -16.61507 -16.41853 -16.31519 -15.73209 -15.48417 -15.13909 -14.65697 -14.49527 -14.21659 -13.76259 -13.60248 -13.31152 -13.24489 -13.07139 -12.88016 -12.76364 -12.58711 -12.18622 -12.14140 -12.06897 -11.85246 -11.70165 -11.42301 -11.35096 -11.17217 -10.96369 -10.84815 -10.36013 -9.68825 -8.33266 -6.38817 -0.05797 0.69391 1.16148 1.31000 1.34878 1.37732 1.40536 2.27350 2.62497 2.99476 3.22034 3.51543 3.62336 3.68810 3.79916 3.91737 3.99641 4.15465 4.22107 4.30128 4.37949 4.44140 4.51176 4.59563 4.68443 4.82984 4.83264 4.86926 4.93473 4.96866 5.06061 5.12155 5.12892 5.27186 5.32613 5.52441 5.59396 5.70166 5.88195 5.90303 6.32262 6.68558 7.23789 7.41676 8.81253 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.007172 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.152954 B = 3903.318065 C = 4181.351606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.153 4.153 3 C 0.092 3.908 4 N -0.437 5.437 5 C 0.180 3.820 6 C -0.513 4.513 7 H 0.061 0.939 8 C 0.033 3.967 9 N -0.928 5.928 10 Si 0.924 3.076 11 H -0.272 1.272 12 H -0.277 1.277 13 H -0.256 1.256 14 C 0.428 3.572 15 N -0.383 5.383 16 N -0.057 5.057 17 N -0.098 5.098 18 N -0.365 5.365 19 C 0.125 3.875 20 C -0.121 4.121 21 C -0.135 4.135 22 C -0.135 4.135 23 C -0.115 4.115 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.037 0.963 30 H 0.000 1.000 31 H 0.270 0.730 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -11.788 4.138 12.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C -0.034 4.034 4 N -0.162 5.162 5 C 0.055 3.945 6 C -0.551 4.551 7 H 0.079 0.921 8 C -0.168 4.168 9 N -0.567 5.567 10 Si 0.748 3.252 11 H -0.197 1.197 12 H -0.202 1.202 13 H -0.180 1.180 14 C 0.062 3.938 15 N -0.242 5.242 16 N -0.053 5.053 17 N -0.086 5.086 18 N -0.164 5.164 19 C 0.005 3.995 20 C -0.141 4.141 21 C -0.173 4.173 22 C -0.172 4.172 23 C -0.153 4.153 24 H 0.118 0.882 25 H 0.137 0.863 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.127 -12.418 3.807 13.628 hybrid contribution 0.334 1.404 -0.059 1.445 sum 4.460 -11.013 3.748 12.459 Atomic orbital electron populations 1.23960 0.95056 1.02919 0.98216 1.22550 0.96282 0.96444 1.01930 1.21298 0.94214 0.97965 0.89895 1.58932 1.06519 1.11529 1.39172 1.20175 0.97250 0.81499 0.95563 1.20845 0.95216 0.95388 1.43692 0.92065 1.25466 0.99418 0.97671 0.94200 1.69960 1.31388 1.10814 1.44573 0.86080 0.81104 0.79366 0.78631 1.19717 1.20204 1.17996 1.23477 0.90284 0.95226 0.84785 1.74797 1.09083 1.18971 1.21351 1.77784 1.07291 1.09605 1.10576 1.82346 1.10761 1.17037 0.98446 1.51633 1.20285 1.34480 1.09970 1.22520 1.04618 1.01543 0.70850 1.22935 0.95966 0.96572 0.98586 1.22938 0.94833 1.01280 0.98242 1.22784 0.97283 1.00583 0.96553 1.22851 0.97292 1.03009 0.92116 0.88184 0.86323 0.88887 0.92164 0.88472 0.94475 0.98194 0.92032 0.85985 0.87557 0.89067 0.90565 0.93141 0.89372 0.90688 0.89256 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 14.31 67.79 0.97 -3.53 16 2 C -0.15 -4.88 9.44 25.66 0.24 -4.64 16 3 C 0.09 3.40 5.08 85.56 0.43 3.83 16 4 N -0.44 -16.81 4.39 -715.78 -3.14 -19.95 16 5 C 0.18 7.80 3.61 85.56 0.31 8.11 16 6 C -0.51 -25.80 8.78 25.60 0.22 -25.58 16 7 H 0.06 3.39 7.56 -2.91 -0.02 3.37 16 8 C 0.03 1.71 5.47 84.66 0.46 2.17 16 9 N -0.93 -52.28 13.96 21.45 0.30 -51.98 16 10 Si 0.92 40.13 27.47 68.60 1.88 42.01 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.26 -10.46 6.54 99.48 0.65 -9.81 16 14 C 0.43 15.99 6.50 260.65 1.69 17.69 16 15 N -0.38 -15.08 10.99 -58.69 -0.65 -15.73 16 16 N -0.06 -2.18 13.38 37.02 0.50 -1.68 16 17 N -0.10 -3.46 13.93 37.02 0.52 -2.95 16 18 N -0.37 -12.10 3.69 -349.61 -1.29 -13.39 16 19 C 0.13 3.25 6.35 86.38 0.55 3.80 16 20 C -0.12 -2.71 3.96 -10.27 -0.04 -2.75 16 21 C -0.14 -3.38 7.63 31.12 0.24 -3.14 16 22 C -0.13 -2.52 8.08 31.12 0.25 -2.26 16 23 C -0.11 -1.95 7.64 31.12 0.24 -1.71 16 24 H 0.10 2.78 7.86 -2.91 -0.02 2.76 16 25 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 26 H 0.09 3.02 8.03 -2.91 -0.02 3.00 16 27 H 0.06 2.26 7.26 -2.38 -0.02 2.24 16 28 H 0.10 3.86 6.24 -2.39 -0.01 3.84 16 29 H 0.04 1.58 6.18 -2.38 -0.01 1.56 16 30 H 0.00 0.01 7.55 -2.39 -0.02 -0.01 16 31 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.11 3.02 6.74 -2.38 -0.02 3.01 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 2.27 7.90 -2.39 -0.02 2.25 16 36 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.20 8.14 -2.38 -0.02 1.19 16 40 H 0.09 1.51 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -58.64 334.05 4.65 -53.98 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.97 Total: 17.69 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.57 Total: -8.00 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.77 Total: -105.69 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.88 Total: 42.01 kcal Total: -58.64 4.65 -53.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335386413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.017 kcal (2) G-P(sol) polarization free energy of solvation -58.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds