Wall clock time and date at job start Mon Mar 30 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 N 1.46901 * 109.46769 * 294.99558 * 4 2 1 6 6 C 1.46906 * 110.99793 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.46978 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47454 * 304.99901 * 7 6 5 9 9 C 1.47198 * 109.47439 * 64.99788 * 7 6 5 10 10 N 5.62778 * 64.42721 * 87.76085 * 2 1 3 11 11 C 1.53001 * 109.47271 * 185.00310 * 7 6 5 12 12 C 1.50696 * 109.47339 * 175.00034 * 11 7 6 13 13 H 1.07999 * 120.00490 * 359.97438 * 12 11 7 14 14 C 1.37885 * 119.99921 * 179.97438 * 12 11 7 15 15 N 1.31510 * 119.99748 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99833 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47400 * 60.00181 * 16 14 12 18 18 H 1.48508 * 109.47203 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47332 * 299.99925 * 16 14 12 20 20 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 21 21 N 1.30514 * 126.34837 * 299.69569 * 20 2 1 22 22 N 1.28599 * 109.67619 * 179.82194 * 21 20 2 23 23 C 1.30523 * 109.66923 * 0.44685 * 22 21 20 24 24 N 1.35492 * 107.30779 * 359.73019 * 23 22 21 25 25 C 1.46503 * 126.98055 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 27 27 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 29 29 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 30 30 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 31 31 H 1.00899 * 111.00283 * 303.95539 * 5 4 2 32 32 H 1.08995 * 109.47087 * 299.99901 * 6 5 4 33 33 H 1.09002 * 109.46903 * 59.99922 * 6 5 4 34 34 H 1.09005 * 109.46867 * 294.99797 * 11 7 6 35 35 H 1.08998 * 109.47402 * 54.99404 * 11 7 6 36 36 H 0.97007 * 119.99801 * 179.97438 * 15 14 12 37 37 H 1.07997 * 126.35027 * 179.73220 * 23 22 21 38 38 H 1.08996 * 109.47054 * 269.99520 * 25 24 23 39 39 H 1.08998 * 109.47101 * 29.99833 * 25 24 23 40 40 H 1.09004 * 109.47029 * 149.99788 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6514 0.0375 2.4456 6 6 2.1257 -0.6264 3.6672 7 6 1.7023 0.1911 4.8892 8 1 2.0613 1.2149 4.7836 9 6 0.2340 0.1942 4.9927 10 7 -0.8992 0.1983 5.0726 11 6 2.3014 -0.4316 6.1519 12 6 1.9873 0.4408 7.3398 13 1 1.4178 1.3488 7.2075 14 6 2.4270 0.0798 8.5958 15 7 3.1201 -1.0262 8.7570 16 14 2.0383 1.1615 10.0681 17 1 0.5659 1.2766 10.2229 18 1 2.6197 0.5571 11.2937 19 1 2.6209 2.5113 9.8583 20 6 2.0324 -0.7105 -1.2304 21 7 1.7992 -1.9528 -1.5556 22 7 2.3791 -2.2246 -2.6708 23 6 3.0164 -1.1706 -3.1029 24 7 2.8146 -0.1797 -2.2012 25 6 3.3357 1.1881 -2.2634 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 1.9882 0.9874 2.3966 32 1 1.6920 -1.6244 3.7301 33 1 3.2127 -0.7037 3.6400 34 1 1.8744 -1.4227 6.3059 35 1 3.3822 -0.5153 6.0381 36 1 3.4298 -1.2800 9.6406 37 1 3.5970 -1.1012 -4.0109 38 1 4.3042 1.2309 -1.7652 39 1 3.4497 1.4864 -3.3056 40 1 2.6409 1.8646 -1.7657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335447931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:07 Heat of formation + Delta-G solvation = 90.136357 kcal Electronic energy + Delta-G solvation = -20565.085015 eV Core-core repulsion = 17415.960781 eV Total energy + Delta-G solvation = -3149.124234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.36738 -37.79273 -36.20387 -35.30897 -34.14291 -33.12601 -31.25282 -29.64829 -28.01992 -27.08769 -25.35148 -23.36662 -22.71762 -22.15614 -21.73109 -20.12530 -17.53356 -17.04985 -16.58933 -16.42363 -15.70478 -15.34227 -15.05431 -14.64764 -14.50551 -13.94157 -13.77964 -13.57994 -13.32421 -12.73880 -12.60867 -12.27141 -12.12672 -11.94683 -11.81830 -11.55337 -11.45120 -11.22372 -11.16655 -11.02637 -10.68584 -10.55807 -10.52438 -10.47104 -10.24707 -9.58502 -9.40510 -9.23785 -8.46920 -8.37355 -6.10227 -4.13667 1.53442 2.14493 2.68656 3.30172 3.34910 3.38342 3.73051 3.83133 3.86178 4.10895 4.25632 4.37377 4.44160 4.52802 4.55620 4.80221 4.86765 4.94523 5.04062 5.16496 5.27794 5.42796 5.50911 5.59694 5.69908 5.76255 5.80216 5.90065 6.00140 6.00433 6.28198 6.36859 6.47596 6.54506 6.99149 7.39446 7.42637 7.52713 7.84625 8.22082 8.52899 8.59189 8.90961 9.51793 11.00620 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.033410 B = 0.002907 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.862160 B = 9629.952032 C = 9825.581329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.001 3.999 3 H 0.084 0.916 4 C 0.072 3.928 5 N -0.689 5.689 6 C 0.067 3.933 7 C 0.010 3.990 8 H 0.099 0.901 9 C 0.254 3.746 10 N -0.478 5.478 11 C 0.031 3.969 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.187 3.813 21 N -0.287 5.287 22 N -0.297 5.297 23 C 0.142 3.858 24 N -0.479 5.479 25 C 0.070 3.930 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.030 0.970 31 H 0.339 0.661 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.027 0.973 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.217 0.783 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.650 6.224 -23.399 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.021 4.021 3 H 0.102 0.898 4 C -0.058 4.058 5 N -0.320 5.320 6 C -0.062 4.062 7 C -0.012 4.012 8 H 0.116 0.884 9 C -0.063 4.063 10 N -0.154 5.154 11 C -0.007 4.007 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.081 4.081 21 N -0.126 5.126 22 N -0.136 5.136 23 C -0.145 4.145 24 N -0.170 5.170 25 C -0.073 4.073 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.156 0.844 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.233 0.767 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.885 4.422 -23.069 23.565 hybrid contribution 1.954 2.133 0.575 2.949 sum 3.840 6.555 -22.495 23.743 Atomic orbital electron populations 1.21711 0.91657 1.03540 1.02191 1.19612 0.97959 0.97315 0.87196 0.89808 1.21880 0.97465 0.98548 0.87900 1.60482 1.64527 1.05634 1.01363 1.22073 0.98266 0.98588 0.87320 1.19200 0.82553 1.01837 0.97571 0.88352 1.28836 0.94760 0.92052 0.90604 1.80993 1.13493 1.09798 1.11155 1.19164 0.96550 0.96575 0.88435 1.21103 1.35071 1.08206 0.92190 0.92542 1.24956 0.94884 0.95138 0.98989 1.69929 1.36644 1.23034 1.23388 0.86652 0.78820 0.80671 0.81915 1.20195 1.21195 1.20091 1.24947 0.96252 0.92477 0.94465 1.74274 1.19870 1.10709 1.07785 1.74282 1.10334 1.23090 1.05932 1.26424 1.04528 0.85149 0.98440 1.46248 1.38813 1.13009 1.18928 1.22139 1.00952 0.79270 1.04917 0.93535 0.91446 0.89872 0.89459 0.95177 0.84360 0.90222 0.93206 0.95492 0.94495 0.92718 0.76665 0.89747 0.88907 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.06 37.16 0.34 -1.03 16 2 C 0.00 0.01 2.88 -91.77 -0.26 -0.26 16 3 H 0.08 0.57 6.89 -51.93 -0.36 0.21 16 4 C 0.07 0.79 5.06 -3.82 -0.02 0.77 16 5 N -0.69 -8.09 5.66 -113.78 -0.64 -8.73 16 6 C 0.07 0.95 5.05 -3.82 -0.02 0.93 16 7 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 8 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 9 C 0.25 5.19 13.67 -20.76 -0.28 4.90 16 10 N -0.48 -10.68 18.54 42.16 0.78 -9.90 16 11 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 12 C -0.53 -13.88 8.60 -34.44 -0.30 -14.18 16 13 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.19 2.01 6.54 -154.99 -1.01 1.00 16 21 N -0.29 -4.05 12.21 32.80 0.40 -3.65 16 22 N -0.30 -3.96 12.21 29.69 0.36 -3.59 16 23 C 0.14 1.23 12.74 -89.94 -1.15 0.09 16 24 N -0.48 -3.76 3.15 -122.69 -0.39 -4.15 16 25 C 0.07 0.21 10.91 59.85 0.65 0.87 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.34 3.31 8.73 -39.29 -0.34 2.97 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.22 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.09 0.21 7.18 -51.93 -0.37 -0.16 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -34.42 346.73 -7.12 -41.54 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -6.08 Total: -3.41 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.49 Total: -4.75 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 1.25 Total: -54.74 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.42 -7.12 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335447931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.681 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds