Wall clock time and date at job start Mon Mar 30 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 N 1.46901 * 109.46769 * 294.99558 * 4 2 1 6 6 C 1.46906 * 110.99793 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.46978 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47454 * 304.99901 * 7 6 5 9 9 C 1.47198 * 109.47439 * 64.99788 * 7 6 5 10 10 N 5.62778 * 64.42721 * 87.76085 * 2 1 3 11 11 C 1.53001 * 109.47271 * 185.00310 * 7 6 5 12 12 C 1.50696 * 109.47339 * 175.00034 * 11 7 6 13 13 H 1.07999 * 120.00490 * 359.97438 * 12 11 7 14 14 C 1.37885 * 119.99921 * 179.97438 * 12 11 7 15 15 N 1.31510 * 119.99748 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99833 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47400 * 60.00181 * 16 14 12 18 18 H 1.48508 * 109.47203 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47332 * 299.99925 * 16 14 12 20 20 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 21 21 N 1.30514 * 126.34837 * 299.69569 * 20 2 1 22 22 N 1.28599 * 109.67619 * 179.82194 * 21 20 2 23 23 C 1.30523 * 109.66923 * 0.44685 * 22 21 20 24 24 N 1.35492 * 107.30779 * 359.73019 * 23 22 21 25 25 C 1.46503 * 126.98055 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 27 27 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 29 29 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 30 30 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 31 31 H 1.00899 * 111.00283 * 303.95539 * 5 4 2 32 32 H 1.08995 * 109.47087 * 299.99901 * 6 5 4 33 33 H 1.09002 * 109.46903 * 59.99922 * 6 5 4 34 34 H 1.09005 * 109.46867 * 294.99797 * 11 7 6 35 35 H 1.08998 * 109.47402 * 54.99404 * 11 7 6 36 36 H 0.97007 * 119.99801 * 179.97438 * 15 14 12 37 37 H 1.07997 * 126.35027 * 179.73220 * 23 22 21 38 38 H 1.08996 * 109.47054 * 269.99520 * 25 24 23 39 39 H 1.08998 * 109.47101 * 29.99833 * 25 24 23 40 40 H 1.09004 * 109.47029 * 149.99788 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6514 0.0375 2.4456 6 6 2.1257 -0.6264 3.6672 7 6 1.7023 0.1911 4.8892 8 1 2.0613 1.2149 4.7836 9 6 0.2340 0.1942 4.9927 10 7 -0.8992 0.1983 5.0726 11 6 2.3014 -0.4316 6.1519 12 6 1.9873 0.4408 7.3398 13 1 1.4178 1.3488 7.2075 14 6 2.4270 0.0798 8.5958 15 7 3.1201 -1.0262 8.7570 16 14 2.0383 1.1615 10.0681 17 1 0.5659 1.2766 10.2229 18 1 2.6197 0.5571 11.2937 19 1 2.6209 2.5113 9.8583 20 6 2.0324 -0.7105 -1.2304 21 7 1.7992 -1.9528 -1.5556 22 7 2.3791 -2.2246 -2.6708 23 6 3.0164 -1.1706 -3.1029 24 7 2.8146 -0.1797 -2.2012 25 6 3.3357 1.1881 -2.2634 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 1.9882 0.9874 2.3966 32 1 1.6920 -1.6244 3.7301 33 1 3.2127 -0.7037 3.6400 34 1 1.8744 -1.4227 6.3059 35 1 3.3822 -0.5153 6.0381 36 1 3.4298 -1.2800 9.6406 37 1 3.5970 -1.1012 -4.0109 38 1 4.3042 1.2309 -1.7652 39 1 3.4497 1.4864 -3.3056 40 1 2.6409 1.8646 -1.7657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335447931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:07 Heat of formation + Delta-G solvation = 68.321139 kcal Electronic energy + Delta-G solvation = -20566.030993 eV Core-core repulsion = 17415.960781 eV Total energy + Delta-G solvation = -3150.070212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.07917 -38.99088 -37.47841 -35.98684 -35.62785 -34.70861 -32.75445 -30.50998 -28.60529 -28.38990 -26.54582 -24.53800 -23.63526 -23.46295 -22.94499 -20.88207 -18.64773 -18.30892 -17.99745 -17.27253 -16.65026 -16.37368 -16.17004 -16.04309 -15.53113 -15.04579 -14.81242 -14.35905 -14.22929 -14.03885 -13.74924 -13.60239 -13.48805 -13.27552 -13.09333 -12.93452 -12.71474 -12.44692 -12.43376 -12.41349 -12.13591 -12.02288 -11.86938 -11.37412 -11.24818 -11.13293 -11.04791 -10.53623 -10.21783 -9.34092 -8.17898 -6.26250 0.87816 1.42196 1.44471 1.51101 1.62826 1.90485 2.12105 2.18293 2.42912 3.02629 3.17780 3.37181 3.47612 3.73847 3.88424 3.92538 4.07607 4.21524 4.26831 4.40684 4.42871 4.50752 4.71082 4.74151 4.77541 4.81534 4.86404 4.89585 5.01091 5.05313 5.17346 5.21185 5.44581 5.48950 5.64107 5.80805 5.94633 6.00393 6.22118 6.57919 6.85900 6.97930 7.42457 7.78038 8.92903 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.033410 B = 0.002907 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.862160 B = 9629.952032 C = 9825.581329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.010 3.990 3 H 0.119 0.881 4 C 0.080 3.920 5 N -0.690 5.690 6 C 0.079 3.921 7 C 0.023 3.977 8 H 0.127 0.873 9 C 0.265 3.735 10 N -0.515 5.515 11 C 0.036 3.964 12 C -0.538 4.538 13 H 0.057 0.943 14 C 0.010 3.990 15 N -0.925 5.925 16 Si 0.949 3.051 17 H -0.282 1.282 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.181 3.819 21 N -0.339 5.339 22 N -0.355 5.355 23 C 0.159 3.841 24 N -0.473 5.473 25 C 0.060 3.940 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.356 0.644 32 H 0.063 0.937 33 H 0.068 0.932 34 H -0.003 1.003 35 H 0.036 0.964 36 H 0.263 0.737 37 H 0.260 0.740 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.962 8.884 -24.783 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.011 4.011 3 H 0.137 0.863 4 C -0.050 4.050 5 N -0.323 5.323 6 C -0.051 4.051 7 C 0.001 3.999 8 H 0.145 0.855 9 C -0.051 4.051 10 N -0.192 5.192 11 C -0.003 4.003 12 C -0.576 4.576 13 H 0.075 0.925 14 C -0.189 4.189 15 N -0.565 5.565 16 Si 0.774 3.226 17 H -0.208 1.208 18 H -0.210 1.210 19 H -0.185 1.185 20 C -0.089 4.089 21 N -0.178 5.178 22 N -0.193 5.193 23 C -0.130 4.130 24 N -0.163 5.163 25 C -0.081 4.081 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.175 0.825 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.015 0.985 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.276 0.724 38 H 0.116 0.884 39 H 0.138 0.862 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.206 7.121 -24.469 25.686 hybrid contribution 1.574 1.328 0.935 2.262 sum 4.780 8.449 -23.534 25.458 Atomic orbital electron populations 1.21619 0.92668 1.01851 1.02366 1.19567 0.96978 0.98705 0.85881 0.86274 1.21737 0.97683 0.97395 0.88181 1.60337 1.64809 1.06487 1.00649 1.21836 0.99098 0.97222 0.86946 1.19163 0.80500 1.03508 0.96738 0.85515 1.29364 0.95305 0.90870 0.89539 1.80996 1.14777 1.11203 1.12274 1.18996 0.96493 0.94855 0.89930 1.21550 1.34197 1.08450 0.93434 0.92464 1.25738 0.95052 0.96340 1.01793 1.70035 1.37997 1.24583 1.23914 0.85747 0.78119 0.79768 0.78930 1.20752 1.20967 1.18472 1.25020 0.96652 0.91960 0.95270 1.74157 1.21716 1.12998 1.08944 1.74164 1.12696 1.25793 1.06681 1.27223 1.02657 0.84108 0.98970 1.46495 1.37702 1.14497 1.17614 1.22565 1.01592 0.76696 1.07222 0.92440 0.94099 0.90452 0.92197 0.94392 0.82453 0.91867 0.91404 0.98496 0.94613 0.92774 0.72394 0.88421 0.86214 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.06 71.98 0.65 -1.88 16 2 C 0.01 0.16 2.88 -11.54 -0.03 0.13 16 3 H 0.12 1.15 6.89 -2.39 -0.02 1.14 16 4 C 0.08 1.65 5.06 86.30 0.44 2.09 16 5 N -0.69 -14.88 5.66 -513.88 -2.91 -17.78 16 6 C 0.08 2.13 5.05 86.30 0.44 2.56 16 7 C 0.02 0.77 2.35 -12.60 -0.03 0.74 16 8 H 0.13 3.63 8.14 -2.39 -0.02 3.62 16 9 C 0.27 10.64 13.67 89.44 1.22 11.86 16 10 N -0.51 -22.95 18.54 20.01 0.37 -22.58 16 11 C 0.04 1.63 4.42 29.85 0.13 1.77 16 12 C -0.54 -28.03 8.60 25.60 0.22 -27.81 16 13 H 0.06 2.91 7.59 -2.91 -0.02 2.89 16 14 C 0.01 0.52 5.46 84.66 0.46 0.98 16 15 N -0.93 -53.17 13.29 21.45 0.28 -52.88 16 16 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 C 0.18 3.67 6.54 137.98 0.90 4.57 16 21 N -0.34 -9.74 12.21 -50.15 -0.61 -10.35 16 22 N -0.35 -9.43 12.21 -59.99 -0.73 -10.16 16 23 C 0.16 2.43 12.74 180.11 2.30 4.72 16 24 N -0.47 -6.16 3.15 -542.07 -1.71 -7.87 16 25 C 0.06 0.11 10.91 127.77 1.39 1.51 16 26 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.62 7.75 -2.39 -0.02 1.61 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.36 5.74 8.73 -89.69 -0.78 4.96 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.26 14.44 8.31 -92.70 -0.77 13.66 16 37 H 0.26 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.12 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.10 0.01 7.18 -2.38 -0.02 -0.01 16 Total: -1.00 -77.28 346.73 5.07 -72.21 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 0.26 Total: 3.14 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 8.09 Total: 1.25 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -5.30 Total: -121.63 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -77.28 5.07 -72.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335447931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.528 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds