Wall clock time and date at job start Mon Mar 30 2020 02:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40440 * 126.81938 * 2 1 4 4 C 1.30712 * 106.79226 * 180.02562 * 3 2 1 5 5 N 1.33244 * 108.94650 * 0.02562 * 4 3 2 6 6 C 1.30835 * 109.82681 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.95915 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47380 * 90.02347 * 7 6 5 9 9 C 1.53003 * 109.47178 * 179.97438 * 8 7 6 10 10 N 1.46892 * 109.46876 * 179.97438 * 9 8 7 11 11 C 1.46907 * 110.99964 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47236 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47367 * 304.99913 * 12 11 10 14 14 C 1.47191 * 109.47084 * 65.00305 * 12 11 10 15 15 N 8.23153 * 69.52287 * 134.84761 * 2 1 3 16 16 C 1.53001 * 109.47188 * 185.00233 * 12 11 10 17 17 C 1.50697 * 109.47499 * 174.99913 * 16 12 11 18 18 H 1.08005 * 119.99424 * 0.02562 * 17 16 12 19 19 C 1.37870 * 120.00467 * 179.97438 * 17 16 12 20 20 N 1.31520 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00481 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46973 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47186 * 119.99949 * 21 19 17 24 24 H 1.48498 * 109.47399 * 240.00244 * 21 19 17 25 25 H 1.08998 * 109.47290 * 89.97412 * 1 2 3 26 26 H 1.09003 * 109.46644 * 209.97452 * 1 2 3 27 27 H 1.09001 * 109.46980 * 329.96770 * 1 2 3 28 28 H 1.07994 * 125.53015 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.46994 * 210.02567 * 7 6 5 30 30 H 1.08998 * 109.47056 * 330.02248 * 7 6 5 31 31 H 1.08998 * 109.47237 * 300.00071 * 8 7 6 32 32 H 1.08998 * 109.47107 * 59.99931 * 8 7 6 33 33 H 1.08998 * 109.47424 * 300.00360 * 9 8 7 34 34 H 1.09005 * 109.46550 * 60.00428 * 9 8 7 35 35 H 1.00900 * 110.99997 * 56.05215 * 10 9 8 36 36 H 1.08999 * 109.47083 * 300.00520 * 11 10 9 37 37 H 1.09008 * 109.46704 * 60.00463 * 11 10 9 38 38 H 1.09002 * 109.47056 * 295.00621 * 16 12 11 39 39 H 1.09004 * 109.46730 * 54.99846 * 16 12 11 40 40 H 0.96999 * 120.00349 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0006 5 7 3.5096 -0.6556 -0.0015 6 6 2.2707 -1.0761 -0.0021 7 6 1.8247 -2.5155 -0.0037 8 6 1.6731 -3.0042 1.4382 9 6 1.2197 -4.4655 1.4365 10 7 1.0747 -4.9347 2.8209 11 6 0.6390 -6.3372 2.8585 12 6 0.4988 -6.7889 4.3136 13 1 1.4358 -6.6106 4.8412 14 6 -0.5817 -6.0279 4.9616 15 7 -1.4146 -5.4383 5.4673 16 6 0.1667 -8.2818 4.3544 17 6 0.1496 -8.7538 5.7855 18 1 0.3547 -8.0582 6.5859 19 6 -0.1289 -10.0731 6.0731 20 7 -0.3792 -10.9199 5.0984 21 14 -0.1494 -10.6582 7.8469 22 1 0.1623 -9.5193 8.7475 23 1 -1.4945 -11.1948 8.1756 24 1 0.8671 -11.7255 8.0279 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3633 -0.8903 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 4.4254 1.2874 -0.0011 29 1 0.8674 -2.5987 -0.5181 30 1 2.5676 -3.1254 -0.5178 31 1 2.6304 -2.9210 1.9526 32 1 0.9303 -2.3943 1.9523 33 1 0.2623 -4.5483 0.9222 34 1 1.9624 -5.0756 0.9223 35 1 0.4397 -4.3452 3.3379 36 1 -0.3228 -6.4324 2.3546 37 1 1.3771 -6.9606 2.3537 38 1 -0.8123 -8.4487 3.9050 39 1 0.9214 -8.8373 3.7976 40 1 -0.5748 -11.8482 5.3007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335518305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:56 Heat of formation + Delta-G solvation = 94.027293 kcal Electronic energy + Delta-G solvation = -19985.490920 eV Core-core repulsion = 16836.535411 eV Total energy + Delta-G solvation = -3148.955510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.39386 -37.73604 -36.09718 -34.61694 -34.07492 -33.33706 -31.77594 -30.38222 -27.88956 -27.00359 -25.25749 -22.68642 -22.30411 -22.15018 -21.50068 -20.54229 -17.35412 -16.78189 -16.64006 -16.28729 -15.92428 -15.32645 -15.07654 -14.79074 -14.37165 -13.93439 -13.69516 -13.56276 -13.30434 -13.18851 -12.74743 -12.56476 -12.27692 -12.12346 -11.96472 -11.84743 -11.42592 -11.27758 -11.09388 -10.97933 -10.75744 -10.53483 -10.29373 -10.29069 -10.04349 -9.81863 -9.56625 -9.23880 -8.48241 -8.40680 -6.11867 -4.14936 1.28853 1.98386 2.66221 3.27207 3.35501 3.40141 3.50262 3.56074 3.70491 4.11548 4.16723 4.39903 4.43710 4.61596 4.68473 4.75223 4.89110 4.96179 4.96698 5.08287 5.25748 5.26436 5.27828 5.47652 5.52042 5.66662 5.85329 5.94922 6.01065 6.11280 6.14601 6.31882 6.46583 6.51006 7.02546 7.34649 7.41269 7.49958 7.81563 7.83442 8.20723 8.35429 8.89899 9.50808 10.99047 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.039199 B = 0.002440 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.125212 B =11474.222794 C =11647.065195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.381 5.381 3 N -0.327 5.327 4 C 0.199 3.801 5 N -0.541 5.541 6 C 0.285 3.715 7 C -0.042 4.042 8 C -0.113 4.113 9 C 0.060 3.940 10 N -0.692 5.692 11 C 0.068 3.932 12 C 0.006 3.994 13 H 0.112 0.888 14 C 0.241 3.759 15 N -0.478 5.478 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.282 1.282 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.217 0.783 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.337 0.663 36 H 0.035 0.965 37 H 0.093 0.907 38 H 0.024 0.976 39 H 0.040 0.960 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 17.787 -14.155 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.172 5.172 3 N -0.154 5.154 4 C -0.104 4.104 5 N -0.269 5.269 6 C 0.009 3.991 7 C -0.082 4.082 8 C -0.152 4.152 9 C -0.069 4.069 10 N -0.323 5.323 11 C -0.062 4.062 12 C -0.016 4.016 13 H 0.130 0.870 14 C -0.075 4.075 15 N -0.155 5.155 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.208 1.208 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.234 0.766 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.155 0.845 36 H 0.053 0.947 37 H 0.111 0.889 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.554 18.920 -13.364 23.435 hybrid contribution -0.882 -0.606 0.580 1.217 sum 2.672 18.315 -12.784 22.494 Atomic orbital electron populations 1.21992 0.73796 1.05198 1.03909 1.50261 1.07998 1.04052 1.54861 1.78042 1.02218 1.08284 1.26904 1.25981 0.95766 0.90516 0.98089 1.70511 1.19603 1.11438 1.25359 1.24386 0.86217 0.92692 0.95838 1.20227 1.02829 0.85710 0.99481 1.21534 1.03488 0.95979 0.94172 1.21918 0.99947 0.94716 0.90364 1.60546 1.55010 1.03926 1.12838 1.22088 0.99557 0.88451 0.96101 1.19345 0.92721 0.97004 0.92497 0.87049 1.29465 0.93847 0.91566 0.92663 1.81159 1.11740 1.12789 1.09830 1.19172 0.98183 0.85000 0.98312 1.21183 1.48461 0.94661 0.92096 0.92451 1.24956 0.94930 0.96846 0.97290 1.69946 1.47547 1.04168 1.31378 0.86533 0.77697 0.78839 0.85003 1.19681 1.21015 1.20787 0.90112 0.88776 0.88843 0.76641 0.89537 0.87527 0.89706 0.92183 0.95142 0.90132 0.84525 0.94664 0.88884 0.95754 0.94134 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.16 59.85 0.67 1.17 16 2 N -0.38 -3.62 4.04 -65.10 -0.26 -3.88 16 3 N -0.33 -3.68 12.70 29.29 0.37 -3.31 16 4 C 0.20 2.06 13.03 -91.81 -1.20 0.86 16 5 N -0.54 -6.26 11.19 -11.97 -0.13 -6.39 16 6 C 0.29 2.78 7.24 -155.70 -1.13 1.65 16 7 C -0.04 -0.29 5.34 -27.88 -0.15 -0.44 16 8 C -0.11 -0.91 5.46 -26.73 -0.15 -1.05 16 9 C 0.06 0.54 5.69 -3.83 -0.02 0.51 16 10 N -0.69 -8.30 6.50 -113.78 -0.74 -9.04 16 11 C 0.07 0.93 5.12 -3.82 -0.02 0.91 16 12 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 13 H 0.11 1.92 8.14 -51.93 -0.42 1.49 16 14 C 0.24 4.73 12.98 -20.67 -0.27 4.46 16 15 N -0.48 -10.14 18.56 42.27 0.78 -9.36 16 16 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 17 C -0.53 -13.83 8.60 -34.44 -0.30 -14.13 16 18 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.26 13.29 55.43 0.74 -24.53 16 21 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.35 7.72 -51.93 -0.40 -0.05 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.22 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.09 0.40 7.76 -51.93 -0.40 0.00 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.34 4.22 7.80 -39.29 -0.31 3.91 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -33.06 348.98 -8.15 -41.21 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.14 Total: -2.14 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.00 Total: -3.97 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.76 Total: -56.50 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.06 -8.15 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335518305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.238 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds