Wall clock time and date at job start Mon Mar 30 2020 02:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40440 * 126.81938 * 2 1 4 4 C 1.30712 * 106.79226 * 180.02562 * 3 2 1 5 5 N 1.33244 * 108.94650 * 0.02562 * 4 3 2 6 6 C 1.30835 * 109.82681 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.95915 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47380 * 90.02347 * 7 6 5 9 9 C 1.53003 * 109.47178 * 179.97438 * 8 7 6 10 10 N 1.46892 * 109.46876 * 179.97438 * 9 8 7 11 11 C 1.46907 * 110.99964 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47236 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47367 * 304.99913 * 12 11 10 14 14 C 1.47191 * 109.47084 * 65.00305 * 12 11 10 15 15 N 8.23153 * 69.52287 * 134.84761 * 2 1 3 16 16 C 1.53001 * 109.47188 * 185.00233 * 12 11 10 17 17 C 1.50697 * 109.47499 * 174.99913 * 16 12 11 18 18 H 1.08005 * 119.99424 * 0.02562 * 17 16 12 19 19 C 1.37870 * 120.00467 * 179.97438 * 17 16 12 20 20 N 1.31520 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00481 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46973 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47186 * 119.99949 * 21 19 17 24 24 H 1.48498 * 109.47399 * 240.00244 * 21 19 17 25 25 H 1.08998 * 109.47290 * 89.97412 * 1 2 3 26 26 H 1.09003 * 109.46644 * 209.97452 * 1 2 3 27 27 H 1.09001 * 109.46980 * 329.96770 * 1 2 3 28 28 H 1.07994 * 125.53015 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.46994 * 210.02567 * 7 6 5 30 30 H 1.08998 * 109.47056 * 330.02248 * 7 6 5 31 31 H 1.08998 * 109.47237 * 300.00071 * 8 7 6 32 32 H 1.08998 * 109.47107 * 59.99931 * 8 7 6 33 33 H 1.08998 * 109.47424 * 300.00360 * 9 8 7 34 34 H 1.09005 * 109.46550 * 60.00428 * 9 8 7 35 35 H 1.00900 * 110.99997 * 56.05215 * 10 9 8 36 36 H 1.08999 * 109.47083 * 300.00520 * 11 10 9 37 37 H 1.09008 * 109.46704 * 60.00463 * 11 10 9 38 38 H 1.09002 * 109.47056 * 295.00621 * 16 12 11 39 39 H 1.09004 * 109.46730 * 54.99846 * 16 12 11 40 40 H 0.96999 * 120.00349 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0006 5 7 3.5096 -0.6556 -0.0015 6 6 2.2707 -1.0761 -0.0021 7 6 1.8247 -2.5155 -0.0037 8 6 1.6731 -3.0042 1.4382 9 6 1.2197 -4.4655 1.4365 10 7 1.0747 -4.9347 2.8209 11 6 0.6390 -6.3372 2.8585 12 6 0.4988 -6.7889 4.3136 13 1 1.4358 -6.6106 4.8412 14 6 -0.5817 -6.0279 4.9616 15 7 -1.4146 -5.4383 5.4673 16 6 0.1667 -8.2818 4.3544 17 6 0.1496 -8.7538 5.7855 18 1 0.3547 -8.0582 6.5859 19 6 -0.1289 -10.0731 6.0731 20 7 -0.3792 -10.9199 5.0984 21 14 -0.1494 -10.6582 7.8469 22 1 0.1623 -9.5193 8.7475 23 1 -1.4945 -11.1948 8.1756 24 1 0.8671 -11.7255 8.0279 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3633 -0.8903 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 4.4254 1.2874 -0.0011 29 1 0.8674 -2.5987 -0.5181 30 1 2.5676 -3.1254 -0.5178 31 1 2.6304 -2.9210 1.9526 32 1 0.9303 -2.3943 1.9523 33 1 0.2623 -4.5483 0.9222 34 1 1.9624 -5.0756 0.9223 35 1 0.4397 -4.3452 3.3379 36 1 -0.3228 -6.4324 2.3546 37 1 1.3771 -6.9606 2.3537 38 1 -0.8123 -8.4487 3.9050 39 1 0.9214 -8.8373 3.7976 40 1 -0.5748 -11.8482 5.3007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335518305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:55 Heat of formation + Delta-G solvation = 73.517503 kcal Electronic energy + Delta-G solvation = -19986.380292 eV Core-core repulsion = 16836.535411 eV Total energy + Delta-G solvation = -3149.844881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.09164 -38.96102 -37.20403 -35.75381 -35.17279 -34.60564 -33.17999 -31.35638 -28.80989 -28.06703 -26.39639 -24.02905 -23.55047 -23.00301 -22.45734 -21.18755 -18.52546 -18.22937 -17.97855 -17.03797 -16.86383 -16.61966 -16.02113 -15.79531 -15.49707 -14.82583 -14.79042 -14.49529 -14.26811 -14.07710 -14.00381 -13.90081 -13.62437 -13.19867 -13.05821 -13.02948 -12.72762 -12.60119 -12.47797 -12.28496 -12.19950 -11.95143 -11.62952 -11.36716 -11.11804 -11.05218 -10.73408 -10.54548 -10.49812 -9.32694 -8.19020 -6.26688 0.59133 1.39368 1.41754 1.42639 1.52710 1.92346 1.94111 1.96402 2.42003 3.03934 3.16368 3.27053 3.33730 3.58456 3.85064 4.04026 4.20524 4.26308 4.35711 4.35833 4.43107 4.49603 4.61251 4.68855 4.70977 4.74591 4.90186 4.98940 5.06316 5.19726 5.30603 5.35321 5.45815 5.49482 5.65271 5.81003 5.85661 6.07988 6.23660 6.39418 6.76782 6.88889 7.10124 7.41896 8.91972 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.039199 B = 0.002440 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.125212 B =11474.222794 C =11647.065195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.384 5.384 3 N -0.356 5.356 4 C 0.191 3.809 5 N -0.574 5.574 6 C 0.279 3.721 7 C -0.035 4.035 8 C -0.101 4.101 9 C 0.061 3.939 10 N -0.699 5.699 11 C 0.080 3.920 12 C 0.017 3.983 13 H 0.120 0.880 14 C 0.252 3.748 15 N -0.507 5.507 16 C 0.038 3.962 17 C -0.538 4.538 18 H 0.052 0.948 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.947 3.053 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.094 0.906 28 H 0.242 0.758 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.334 0.666 36 H 0.037 0.963 37 H 0.107 0.893 38 H 0.002 0.998 39 H 0.038 0.962 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 18.065 -14.709 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.175 5.175 3 N -0.185 5.185 4 C -0.111 4.111 5 N -0.303 5.303 6 C 0.003 3.997 7 C -0.075 4.075 8 C -0.140 4.140 9 C -0.068 4.068 10 N -0.329 5.329 11 C -0.051 4.051 12 C -0.005 4.005 13 H 0.138 0.862 14 C -0.064 4.064 15 N -0.184 5.184 16 C -0.001 4.001 17 C -0.576 4.576 18 H 0.070 0.930 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.773 3.227 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.116 0.884 26 H 0.132 0.868 27 H 0.113 0.887 28 H 0.258 0.742 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.056 0.944 37 H 0.125 0.875 38 H 0.021 0.979 39 H 0.056 0.944 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.563 19.212 -13.923 23.992 hybrid contribution -0.902 -0.667 0.742 1.345 sum 2.661 18.544 -13.181 22.906 Atomic orbital electron populations 1.22329 0.71727 1.06259 1.05408 1.50517 1.09202 1.03522 1.54220 1.77967 1.02845 1.09699 1.27949 1.26542 0.96491 0.90605 0.97475 1.70499 1.21004 1.12146 1.26619 1.24849 0.86002 0.93723 0.95115 1.20300 1.04427 0.83969 0.98835 1.21373 1.02289 0.95559 0.94819 1.21986 1.01059 0.95052 0.88673 1.60518 1.54685 1.02842 1.14877 1.21917 1.00286 0.89854 0.92995 1.19257 0.92151 0.93735 0.95325 0.86192 1.29808 0.93600 0.91079 0.91925 1.81161 1.12587 1.13790 1.10893 1.18997 0.96867 0.88195 0.96059 1.21595 1.47519 0.94666 0.93842 0.92956 1.25695 0.95025 0.97331 1.00733 1.70030 1.48733 1.04479 1.33030 0.85663 0.77666 0.78463 0.80889 1.19524 1.21112 1.19839 0.88370 0.86838 0.88728 0.74245 0.86700 0.86975 0.91789 0.92166 0.93519 0.89303 0.84903 0.94446 0.87523 0.97931 0.94412 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 11.16 127.77 1.43 2.16 16 2 N -0.38 -6.80 4.04 -359.86 -1.45 -8.25 16 3 N -0.36 -7.84 12.70 -61.25 -0.78 -8.62 16 4 C 0.19 3.88 13.03 180.76 2.36 6.24 16 5 N -0.57 -12.93 11.19 -191.78 -2.15 -15.07 16 6 C 0.28 5.07 7.24 138.23 1.00 6.07 16 7 C -0.04 -0.40 5.34 29.85 0.16 -0.24 16 8 C -0.10 -1.42 5.46 30.60 0.17 -1.25 16 9 C 0.06 0.92 5.69 86.31 0.49 1.41 16 10 N -0.70 -15.19 6.50 -513.88 -3.34 -18.53 16 11 C 0.08 2.02 5.12 86.30 0.44 2.46 16 12 C 0.02 0.59 2.42 -12.60 -0.03 0.56 16 13 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 14 C 0.25 9.64 12.98 89.41 1.16 10.80 16 15 N -0.51 -21.13 18.56 20.04 0.37 -20.75 16 16 C 0.04 1.68 4.42 29.85 0.13 1.81 16 17 C -0.54 -28.13 8.60 25.60 0.22 -27.91 16 18 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 19 C 0.01 0.60 5.46 84.65 0.46 1.06 16 20 N -0.92 -52.29 13.29 21.45 0.28 -52.01 16 21 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.11 0.53 7.72 -2.39 -0.02 0.51 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.24 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.11 0.65 7.76 -2.39 -0.02 0.63 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.33 7.70 7.80 -89.69 -0.70 7.00 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -70.58 348.98 3.29 -67.29 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.33 Total: 7.60 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 7.98 Total: 3.17 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -7.06 Total: -123.23 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.58 3.29 -67.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335518305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.810 kcal (2) G-P(sol) polarization free energy of solvation -70.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds