Wall clock time and date at job start Mon Mar 30 2020 02:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 N 1.46503 * 109.46726 * 119.99951 * 2 1 3 5 5 C 1.35311 * 125.87154 * 275.29144 * 4 2 1 6 6 C 1.35350 * 106.17349 * 180.18791 * 5 4 2 7 7 C 1.50704 * 126.74687 * 179.85375 * 6 5 4 8 8 N 1.46900 * 109.47086 * 94.71499 * 7 6 5 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 8.53944 * 82.87594 * 120.40438 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 N 1.33765 * 106.49988 * 359.59311 * 6 5 4 24 24 N 1.28635 * 108.88432 * 0.26441 * 23 6 5 25 25 H 1.09000 * 109.47015 * 299.99845 * 1 2 3 26 26 H 1.09001 * 109.46747 * 59.99965 * 1 2 3 27 27 H 1.08998 * 109.47627 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47089 * 239.99670 * 2 1 3 29 29 H 1.08995 * 109.47282 * 300.00150 * 3 2 1 30 30 H 1.09000 * 109.47010 * 60.00151 * 3 2 1 31 31 H 1.09000 * 109.46955 * 179.97438 * 3 2 1 32 32 H 1.07997 * 126.91019 * 0.04029 * 5 4 2 33 33 H 1.09003 * 109.47324 * 334.71319 * 7 6 5 34 34 H 1.09004 * 109.47052 * 214.71477 * 7 6 5 35 35 H 1.00897 * 111.00127 * 56.04185 * 8 7 6 36 36 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 37 37 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 38 38 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 39 39 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 40 40 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1872 -0.1357 2.4187 6 6 2.6555 -1.1218 3.2189 7 6 3.0062 -1.0071 4.6801 8 7 1.8552 -1.4208 5.4938 9 6 2.1613 -1.3224 6.9272 10 6 0.9414 -1.7598 7.7403 11 1 0.0743 -1.1717 7.4397 12 6 0.6749 -3.1868 7.4961 13 7 0.4710 -4.2884 7.3082 14 6 1.2155 -1.5398 9.2294 15 6 -0.0278 -1.8544 10.0209 16 1 -0.9237 -2.1792 9.5127 17 6 -0.0197 -1.7336 11.3944 18 7 -1.1030 -2.0133 12.0855 19 14 1.5301 -1.1724 12.2734 20 1 1.5237 0.3079 12.3916 21 1 1.5768 -1.7770 13.6290 22 1 2.7219 -1.6019 11.4985 23 7 2.7405 -2.2194 2.4591 24 7 2.3558 -1.9308 1.2661 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.9904 0.8885 2.6989 33 1 3.2625 0.0266 4.9122 34 1 3.8576 -1.6509 4.9010 35 1 1.5575 -2.3538 5.2511 36 1 2.4121 -0.2910 7.1751 37 1 3.0067 -1.9686 7.1634 38 1 1.4997 -0.5009 9.3969 39 1 2.0258 -2.1944 9.5503 40 1 -1.0974 -1.9279 13.0517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336037488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:24 Heat of formation + Delta-G solvation = 112.022539 kcal Electronic energy + Delta-G solvation = -20397.780714 eV Core-core repulsion = 17249.605536 eV Total energy + Delta-G solvation = -3148.175178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.41776 -37.64378 -36.85412 -35.32744 -33.70091 -32.31077 -31.51938 -30.89152 -28.05979 -27.53960 -25.24121 -24.11886 -22.60720 -21.65290 -21.26973 -20.77899 -17.58493 -16.94182 -16.73436 -16.55355 -15.79752 -15.25141 -15.00928 -14.77354 -14.17562 -13.92765 -13.67941 -13.35172 -13.18178 -12.95952 -12.86645 -12.70415 -12.34755 -12.27824 -12.09320 -11.93425 -11.81684 -11.56792 -11.36571 -11.13712 -10.93002 -10.78753 -10.40630 -10.25599 -9.94546 -9.77704 -9.34226 -9.29854 -8.60176 -8.39653 -6.08974 -4.09508 1.45897 2.08241 2.39220 3.27029 3.36036 3.36998 3.58647 3.63293 3.85395 4.15613 4.20143 4.37450 4.39766 4.43950 4.70145 4.76291 4.82551 4.86242 5.01451 5.05329 5.11859 5.25656 5.29728 5.34353 5.44375 5.50504 5.54623 5.65025 5.83470 6.00915 6.01489 6.19286 6.37990 6.42963 6.94330 6.98319 7.16139 7.35505 7.65613 8.38681 8.40813 8.45336 8.94962 9.50815 11.04233 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.029559 B = 0.002958 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.031859 B = 9462.637747 C = 9562.235947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 C -0.165 4.165 4 N -0.289 5.289 5 C -0.029 4.029 6 C -0.017 4.017 7 C 0.144 3.856 8 N -0.688 5.688 9 C 0.065 3.935 10 C 0.018 3.982 11 H 0.116 0.884 12 C 0.236 3.764 13 N -0.466 5.466 14 C -0.004 4.004 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.898 5.898 19 Si 0.878 3.122 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.264 1.264 23 N -0.265 5.265 24 N -0.090 5.090 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.189 0.811 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.345 0.655 36 H 0.093 0.907 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.024 0.976 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 12.160 -24.146 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.036 3.964 3 C -0.223 4.223 4 N -0.084 5.084 5 C -0.180 4.180 6 C -0.155 4.155 7 C 0.014 3.986 8 N -0.320 5.320 9 C -0.065 4.065 10 C -0.004 4.004 11 H 0.134 0.866 12 C -0.081 4.081 13 N -0.142 5.142 14 C -0.043 4.043 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.536 5.536 19 Si 0.705 3.295 20 H -0.200 1.200 21 H -0.214 1.214 22 H -0.188 1.188 23 N -0.132 5.132 24 N -0.069 5.069 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.206 0.794 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.163 0.837 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.873 9.772 -25.085 28.049 hybrid contribution 1.043 0.978 1.317 1.943 sum 8.916 10.750 -23.769 27.568 Atomic orbital electron populations 1.22237 0.92268 1.04011 1.03935 1.21695 0.96031 0.93665 0.84999 1.22215 1.02480 0.93277 1.04376 1.47588 1.42472 1.08370 1.09927 1.23268 1.07335 1.02307 0.85121 1.21880 1.05662 0.90045 0.97929 1.20086 0.92335 1.01869 0.84342 1.60608 1.34523 1.32679 1.04147 1.22124 0.96213 1.02269 0.85935 1.19051 0.99187 0.83341 0.98819 0.86639 1.29148 0.92447 0.95122 0.91404 1.81058 1.09424 1.12929 1.10825 1.19630 0.98667 0.97734 0.88269 1.21044 0.97357 1.46386 0.91757 0.90799 1.25002 0.96037 0.94646 0.97500 1.69908 1.27972 1.48624 1.07078 0.86808 0.84247 0.79194 0.79250 1.20000 1.21378 1.18834 1.75069 1.16564 1.24682 0.96911 1.78286 1.16338 0.96185 1.16046 0.91157 0.89737 0.91199 0.86981 0.89421 0.90895 0.91242 0.79396 0.88973 0.93283 0.83661 0.88832 0.94382 0.94656 0.95783 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 9.52 37.16 0.35 -0.47 16 2 C 0.14 0.77 3.85 -67.93 -0.26 0.50 16 3 C -0.17 -0.52 8.84 37.16 0.33 -0.19 16 4 N -0.29 -2.81 3.25 -54.76 -0.18 -2.99 16 5 C -0.03 -0.27 10.62 -17.05 -0.18 -0.45 16 6 C -0.02 -0.20 6.76 -82.78 -0.56 -0.76 16 7 C 0.14 1.60 6.25 -4.97 -0.03 1.57 16 8 N -0.69 -9.06 6.49 -115.05 -0.75 -9.81 16 9 C 0.06 0.88 5.12 -3.82 -0.02 0.86 16 10 C 0.02 0.32 2.42 -93.41 -0.23 0.09 16 11 H 0.12 2.00 8.14 -51.93 -0.42 1.57 16 12 C 0.24 4.87 12.98 -20.76 -0.27 4.60 16 13 N -0.47 -10.60 18.54 42.15 0.78 -9.82 16 14 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 15 C -0.53 -14.26 9.15 -34.44 -0.32 -14.57 16 16 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 19 Si 0.88 20.61 27.47 -169.99 -4.67 15.95 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 23 N -0.27 -3.97 12.41 33.29 0.41 -3.56 16 24 N -0.09 -1.22 13.17 60.35 0.79 -0.42 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.21 7.18 -51.93 -0.37 -0.17 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.19 1.13 7.31 -52.49 -0.38 0.74 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.35 5.24 7.80 -39.29 -0.31 4.94 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.69 7.58 -51.93 -0.39 0.30 16 39 H 0.02 0.52 7.19 -51.93 -0.37 0.15 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -34.54 343.25 -5.09 -39.63 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.06 Total: -0.57 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -1.38 Total: -7.13 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 1.84 Total: -53.05 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.54 -5.09 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336037488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.653 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds