Wall clock time and date at job start Mon Mar 30 2020 02:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 N 1.46503 * 109.46726 * 119.99951 * 2 1 3 5 5 C 1.35311 * 125.87154 * 275.29144 * 4 2 1 6 6 C 1.35350 * 106.17349 * 180.18791 * 5 4 2 7 7 C 1.50704 * 126.74687 * 179.85375 * 6 5 4 8 8 N 1.46900 * 109.47086 * 94.71499 * 7 6 5 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 8.53944 * 82.87594 * 120.40438 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 N 1.33765 * 106.49988 * 359.59311 * 6 5 4 24 24 N 1.28635 * 108.88432 * 0.26441 * 23 6 5 25 25 H 1.09000 * 109.47015 * 299.99845 * 1 2 3 26 26 H 1.09001 * 109.46747 * 59.99965 * 1 2 3 27 27 H 1.08998 * 109.47627 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47089 * 239.99670 * 2 1 3 29 29 H 1.08995 * 109.47282 * 300.00150 * 3 2 1 30 30 H 1.09000 * 109.47010 * 60.00151 * 3 2 1 31 31 H 1.09000 * 109.46955 * 179.97438 * 3 2 1 32 32 H 1.07997 * 126.91019 * 0.04029 * 5 4 2 33 33 H 1.09003 * 109.47324 * 334.71319 * 7 6 5 34 34 H 1.09004 * 109.47052 * 214.71477 * 7 6 5 35 35 H 1.00897 * 111.00127 * 56.04185 * 8 7 6 36 36 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 37 37 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 38 38 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 39 39 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 40 40 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1872 -0.1357 2.4187 6 6 2.6555 -1.1218 3.2189 7 6 3.0062 -1.0071 4.6801 8 7 1.8552 -1.4208 5.4938 9 6 2.1613 -1.3224 6.9272 10 6 0.9414 -1.7598 7.7403 11 1 0.0743 -1.1717 7.4397 12 6 0.6749 -3.1868 7.4961 13 7 0.4710 -4.2884 7.3082 14 6 1.2155 -1.5398 9.2294 15 6 -0.0278 -1.8544 10.0209 16 1 -0.9237 -2.1792 9.5127 17 6 -0.0197 -1.7336 11.3944 18 7 -1.1030 -2.0133 12.0855 19 14 1.5301 -1.1724 12.2734 20 1 1.5237 0.3079 12.3916 21 1 1.5768 -1.7770 13.6290 22 1 2.7219 -1.6019 11.4985 23 7 2.7405 -2.2194 2.4591 24 7 2.3558 -1.9308 1.2661 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.9904 0.8885 2.6989 33 1 3.2625 0.0266 4.9122 34 1 3.8576 -1.6509 4.9010 35 1 1.5575 -2.3538 5.2511 36 1 2.4121 -0.2910 7.1751 37 1 3.0067 -1.9686 7.1634 38 1 1.4997 -0.5009 9.3969 39 1 2.0258 -2.1944 9.5503 40 1 -1.0974 -1.9279 13.0517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336037488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:24 Heat of formation + Delta-G solvation = 86.405292 kcal Electronic energy + Delta-G solvation = -20398.891561 eV Core-core repulsion = 17249.605536 eV Total energy + Delta-G solvation = -3149.286025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.22469 -38.95692 -37.52098 -36.59820 -35.42273 -33.88780 -32.35917 -31.97134 -29.13410 -28.25728 -26.44621 -24.81018 -23.78406 -23.30850 -22.22062 -21.42873 -18.93414 -18.37805 -18.07607 -17.33183 -16.89016 -16.38322 -15.92559 -15.58656 -15.42535 -15.06150 -14.78106 -14.55412 -14.24856 -14.15707 -13.96343 -13.60142 -13.52194 -13.23325 -13.16816 -13.09842 -12.54801 -12.52153 -12.47226 -12.39212 -12.14638 -12.09307 -11.73463 -11.63443 -11.56865 -11.26728 -11.00186 -10.70304 -10.19374 -9.38392 -8.22330 -6.28082 0.69853 1.45277 1.46459 1.48838 1.52034 1.59058 1.94773 1.96722 2.43994 3.13777 3.22899 3.25953 3.45233 3.61668 3.81542 3.93185 4.02513 4.13500 4.21697 4.44560 4.48045 4.56363 4.64072 4.71019 4.73289 4.78917 4.79999 4.93125 4.99278 5.01699 5.16494 5.19209 5.26459 5.28242 5.50346 5.66243 5.77027 6.02943 6.21060 6.29053 6.75897 6.82408 7.36379 7.55281 8.94901 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.029559 B = 0.002958 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.031859 B = 9462.637747 C = 9562.235947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 C -0.159 4.159 4 N -0.280 5.280 5 C -0.013 4.013 6 C -0.039 4.039 7 C 0.148 3.852 8 N -0.690 5.690 9 C 0.075 3.925 10 C 0.023 3.977 11 H 0.121 0.879 12 C 0.247 3.753 13 N -0.513 5.513 14 C -0.001 4.001 15 C -0.532 4.532 16 H 0.026 0.974 17 C 0.000 4.000 18 N -0.957 5.957 19 Si 0.952 3.048 20 H -0.254 1.254 21 H -0.298 1.298 22 H -0.236 1.236 23 N -0.312 5.312 24 N -0.127 5.127 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.044 0.956 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.228 0.772 33 H 0.127 0.873 34 H 0.043 0.957 35 H 0.328 0.672 36 H 0.130 0.870 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.026 0.974 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.618 15.636 -25.045 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.217 4.217 4 N -0.075 5.075 5 C -0.165 4.165 6 C -0.178 4.178 7 C 0.018 3.982 8 N -0.320 5.320 9 C -0.054 4.054 10 C 0.001 3.999 11 H 0.139 0.861 12 C -0.069 4.069 13 N -0.190 5.190 14 C -0.040 4.040 15 C -0.570 4.570 16 H 0.044 0.956 17 C -0.196 4.196 18 N -0.598 5.598 19 Si 0.774 3.226 20 H -0.178 1.178 21 H -0.225 1.225 22 H -0.159 1.159 23 N -0.178 5.178 24 N -0.106 5.106 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.064 0.936 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.245 0.755 33 H 0.145 0.855 34 H 0.061 0.939 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.086 13.255 -26.047 30.917 hybrid contribution 0.224 -0.088 1.490 1.509 sum 10.311 13.167 -24.557 29.711 Atomic orbital electron populations 1.22233 0.91719 1.02803 1.05255 1.22130 0.96423 0.94988 0.83713 1.22228 1.02167 0.91274 1.05992 1.48000 1.40819 1.07490 1.11190 1.23834 1.05081 1.03284 0.84340 1.22224 1.06750 0.90162 0.98667 1.20213 0.91035 1.03567 0.83416 1.60644 1.35695 1.31520 1.04121 1.22075 0.93634 1.04177 0.85551 1.19179 1.01603 0.81379 0.97709 0.86138 1.29901 0.91106 0.95787 0.90142 1.81052 1.11075 1.14567 1.12319 1.19588 0.95599 0.99521 0.89335 1.21436 0.98122 1.45101 0.92323 0.95595 1.26095 0.99907 0.94985 0.98646 1.70102 1.31093 1.51183 1.07400 0.85642 0.80067 0.79635 0.77225 1.17781 1.22509 1.15867 1.75000 1.18171 1.26727 0.97920 1.78197 1.18178 0.98215 1.15969 0.91291 0.86930 0.93636 0.86732 0.87093 0.89995 0.91672 0.75535 0.85460 0.93923 0.85527 0.85220 0.94049 0.91175 0.95554 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.52 71.98 0.69 -0.65 16 2 C 0.13 1.18 3.85 44.99 0.17 1.35 16 3 C -0.16 -0.46 8.84 71.98 0.64 0.17 16 4 N -0.28 -5.12 3.25 -327.16 -1.06 -6.18 16 5 C -0.01 -0.21 10.62 83.49 0.89 0.68 16 6 C -0.04 -0.89 6.76 41.60 0.28 -0.60 16 7 C 0.15 2.88 6.25 85.56 0.53 3.41 16 8 N -0.69 -16.60 6.49 -517.92 -3.36 -19.96 16 9 C 0.08 1.79 5.12 86.30 0.44 2.23 16 10 C 0.02 0.78 2.42 -12.60 -0.03 0.75 16 11 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 12 C 0.25 10.22 12.98 89.44 1.16 11.38 16 13 N -0.51 -23.91 18.54 20.01 0.37 -23.54 16 14 C 0.00 -0.06 3.49 29.85 0.10 0.05 16 15 C -0.53 -28.86 9.15 25.60 0.23 -28.62 16 16 H 0.03 1.60 7.84 -2.91 -0.02 1.58 16 17 C 0.00 0.00 5.47 84.66 0.46 0.46 16 18 N -0.96 -59.72 13.96 21.45 0.30 -59.42 16 19 Si 0.95 41.26 27.47 68.60 1.88 43.14 16 20 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 23 N -0.31 -9.46 12.41 -48.60 -0.60 -10.06 16 24 N -0.13 -3.50 13.17 37.02 0.49 -3.01 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.08 0.12 7.18 -2.39 -0.02 0.10 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.23 1.69 7.31 -2.91 -0.02 1.67 16 33 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.33 9.80 7.80 -89.70 -0.70 9.10 16 36 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 2.39 7.58 -2.38 -0.02 2.37 16 39 H 0.03 1.05 7.19 -2.39 -0.02 1.04 16 40 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -80.28 343.25 3.87 -76.41 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.28 Total: 12.02 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 5.57 Total: -9.40 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -3.87 Total: -122.17 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.14 kcal Total: -80.28 3.87 -76.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336037488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.812 kcal (2) G-P(sol) polarization free energy of solvation -80.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds