Wall clock time and date at job start Mon Mar 30 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46589 * 2 1 4 4 N 1.28711 * 125.87429 * 270.01906 * 3 2 1 5 5 N 1.28630 * 110.18529 * 179.97438 * 4 3 2 6 6 C 1.33769 * 108.88590 * 359.76889 * 5 4 3 7 7 C 1.50694 * 126.75803 * 180.23131 * 6 5 4 8 8 C 1.35319 * 125.86597 * 90.00090 * 3 2 1 9 9 C 1.50699 * 126.91314 * 359.97438 * 8 3 2 10 10 N 1.46906 * 109.47140 * 90.00133 * 9 8 3 11 11 C 1.46898 * 110.99888 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.46764 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.46962 * 54.99965 * 12 11 10 14 14 C 1.47200 * 109.47239 * 295.00110 * 12 11 10 15 15 N 5.40361 * 130.66378 * 121.11856 * 2 1 3 16 16 C 1.53003 * 109.46940 * 175.00201 * 12 11 10 17 17 C 1.50697 * 109.46842 * 185.00282 * 16 12 11 18 18 H 1.07995 * 120.00222 * 359.97438 * 17 16 12 19 19 C 1.37877 * 119.99781 * 180.02562 * 17 16 12 20 20 N 1.31517 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00270 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46641 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47312 * 119.99383 * 21 19 17 24 24 H 1.48494 * 109.47359 * 240.00132 * 21 19 17 25 25 H 1.08994 * 109.47300 * 299.99787 * 1 2 3 26 26 H 1.09001 * 109.46727 * 60.00225 * 1 2 3 27 27 H 1.09003 * 109.46868 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47300 * 240.00212 * 2 1 3 29 29 H 1.09001 * 109.46727 * 119.99775 * 2 1 3 30 30 H 1.09005 * 109.47611 * 270.16311 * 7 6 5 31 31 H 1.09007 * 109.46877 * 30.16215 * 7 6 5 32 32 H 1.09001 * 109.47681 * 150.15860 * 7 6 5 33 33 H 1.09000 * 109.47247 * 330.00154 * 9 8 3 34 34 H 1.09001 * 109.47358 * 209.99580 * 9 8 3 35 35 H 1.00902 * 110.99923 * 303.95945 * 10 9 8 36 36 H 1.08995 * 109.47296 * 299.99911 * 11 10 9 37 37 H 1.08997 * 109.47334 * 60.00212 * 11 10 9 38 38 H 1.09007 * 109.46462 * 304.99730 * 16 12 11 39 39 H 1.08997 * 109.47218 * 64.99496 * 16 12 11 40 40 H 0.97005 * 119.99700 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2693 2.0925 -1.0430 5 7 2.6816 3.2602 -0.6951 6 6 2.7017 3.3322 0.6405 7 6 3.1134 4.5186 1.4735 8 6 2.2825 2.1287 1.0966 9 6 2.1333 1.7083 2.5360 10 7 3.3906 1.1096 3.0041 11 6 3.2819 0.6863 4.4066 12 6 4.6074 0.0687 4.8569 13 1 5.4171 0.7759 4.6779 14 6 4.8571 -1.1662 4.0956 15 7 5.0512 -2.1183 3.5091 16 6 4.5365 -0.2583 6.3499 17 6 5.8803 -0.7518 6.8204 18 1 6.7026 -0.8253 6.1242 19 6 6.0598 -1.1104 8.1396 20 7 5.0583 -1.0213 8.9873 21 14 7.7254 -1.7229 8.7228 22 1 8.6770 -1.7302 7.5827 23 1 8.2372 -0.8253 9.7894 24 1 7.5862 -3.1004 9.2596 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.1833 4.4669 1.6757 31 1 2.8899 5.4379 0.9321 32 1 2.5649 4.5092 2.4154 33 1 1.3295 0.9769 2.6195 34 1 1.8965 2.5797 3.1465 35 1 3.6656 0.3386 2.4142 36 1 3.0528 1.5503 5.0302 37 1 2.4862 -0.0524 4.5026 38 1 4.2639 0.6390 6.9057 39 1 3.7864 -1.0312 6.5174 40 1 5.1847 -1.2732 9.9155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336050155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:13 Heat of formation + Delta-G solvation = 103.948170 kcal Electronic energy + Delta-G solvation = -20910.580742 eV Core-core repulsion = 17762.055433 eV Total energy + Delta-G solvation = -3148.525309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.39699 -37.71631 -35.95542 -35.50685 -33.88388 -32.78812 -31.62440 -30.79668 -28.26432 -26.82624 -25.24041 -24.46525 -22.72265 -21.91790 -21.33675 -20.68991 -17.30143 -16.86481 -16.76017 -16.45295 -15.96688 -15.13527 -14.90684 -14.39051 -14.07773 -13.97653 -13.68817 -13.36657 -13.08026 -12.94183 -12.73934 -12.68923 -12.36409 -12.24119 -12.16906 -11.94472 -11.80869 -11.56191 -11.35510 -11.11948 -10.86961 -10.77976 -10.58724 -10.35931 -10.12302 -9.66489 -9.30524 -9.05717 -8.57648 -8.51079 -6.15698 -4.18938 1.41893 2.15181 2.46334 3.24738 3.33314 3.37777 3.44551 3.50986 4.00305 4.10359 4.31306 4.37411 4.42947 4.53874 4.67346 4.69993 4.74061 4.96381 5.09176 5.22182 5.22931 5.25953 5.36261 5.53744 5.55384 5.63660 5.65513 5.78605 5.90852 5.99954 6.19557 6.24428 6.43123 6.44309 6.81347 7.12691 7.35406 7.44021 7.79455 8.16123 8.27892 8.43921 8.85808 9.47180 10.95130 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.003463 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.510481 B = 8084.057617 C = 8482.126851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.286 5.286 4 N -0.087 5.087 5 N -0.273 5.273 6 C -0.002 4.002 7 C -0.064 4.064 8 C -0.017 4.017 9 C 0.133 3.867 10 N -0.684 5.684 11 C 0.067 3.933 12 C 0.006 3.994 13 H 0.113 0.887 14 C 0.240 3.760 15 N -0.476 5.476 16 C 0.033 3.967 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.284 1.284 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.106 0.894 35 H 0.337 0.663 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.024 0.976 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 7.031 -12.635 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.081 5.081 4 N -0.066 5.066 5 N -0.140 5.140 6 C -0.140 4.140 7 C -0.122 4.122 8 C -0.149 4.149 9 C 0.002 3.998 10 N -0.316 5.316 11 C -0.062 4.062 12 C -0.016 4.016 13 H 0.131 0.869 14 C -0.077 4.077 15 N -0.153 5.153 16 C -0.006 4.006 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.210 1.210 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.155 0.845 36 H 0.116 0.884 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.148 6.175 -14.752 18.940 hybrid contribution 0.288 -1.191 1.688 2.086 sum -9.860 4.985 -13.064 17.109 Atomic orbital electron populations 1.22160 0.92843 1.04033 1.03643 1.22087 0.96436 0.76973 1.05849 1.47318 1.42975 1.13212 1.04625 1.78246 1.17283 0.99154 1.11879 1.75042 1.16348 1.10454 1.12128 1.21809 1.04539 0.96481 0.91206 1.20064 1.02326 0.92602 0.97250 1.21827 1.08587 0.93099 0.91348 1.20345 0.91568 1.00597 0.87272 1.60599 1.30217 1.36620 1.04120 1.22142 0.96472 0.99842 0.87764 1.19348 0.97667 0.87432 0.97109 0.86932 1.29309 0.92146 0.94567 0.91666 1.81004 1.09648 1.11833 1.12781 1.19172 0.98304 0.98301 0.84818 1.21169 0.96313 1.44363 0.94684 0.92446 1.24946 0.96821 0.95330 0.96819 1.69943 1.30844 1.48021 1.04168 0.86539 0.84166 0.78550 0.78864 1.19665 1.20755 1.20997 0.91531 0.91188 0.89578 0.87346 0.88193 0.90159 0.91000 0.90601 0.93951 0.87618 0.84537 0.88440 0.94420 0.94068 0.95737 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 2 C 0.11 0.85 6.75 -4.04 -0.03 0.83 16 3 N -0.29 -3.28 3.34 -57.04 -0.19 -3.47 16 4 N -0.09 -1.24 13.16 60.35 0.79 -0.44 16 5 N -0.27 -4.07 12.41 33.29 0.41 -3.66 16 6 C 0.00 -0.02 7.25 -82.78 -0.60 -0.62 16 7 C -0.06 -0.60 10.26 36.00 0.37 -0.23 16 8 C -0.02 -0.19 6.51 -82.08 -0.53 -0.72 16 9 C 0.13 1.26 5.58 -4.97 -0.03 1.23 16 10 N -0.68 -7.88 6.49 -115.05 -0.75 -8.62 16 11 C 0.07 0.85 5.12 -3.82 -0.02 0.83 16 12 C 0.01 0.11 2.42 -93.40 -0.23 -0.12 16 13 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 14 C 0.24 4.54 12.97 -20.79 -0.27 4.27 16 15 N -0.48 -9.80 18.53 42.12 0.78 -9.02 16 16 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 17 C -0.53 -13.57 8.60 -34.44 -0.30 -13.86 16 18 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 21 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 0.72 7.72 -51.93 -0.40 0.32 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.08 0.58 7.31 -51.93 -0.38 0.20 16 33 H 0.04 0.35 7.81 -51.93 -0.41 -0.06 16 34 H 0.11 0.86 7.30 -51.93 -0.38 0.48 16 35 H 0.34 4.20 7.80 -39.29 -0.31 3.90 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -31.64 347.05 -5.53 -37.17 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.06 Total: -2.08 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.47 Total: -6.89 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 1.79 Total: -49.27 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.64 -5.53 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336050155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.115 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds