Wall clock time and date at job start Mon Mar 30 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.46589 * 2 1 4 4 N 1.28711 * 125.87429 * 270.01906 * 3 2 1 5 5 N 1.28630 * 110.18529 * 179.97438 * 4 3 2 6 6 C 1.33769 * 108.88590 * 359.76889 * 5 4 3 7 7 C 1.50694 * 126.75803 * 180.23131 * 6 5 4 8 8 C 1.35319 * 125.86597 * 90.00090 * 3 2 1 9 9 C 1.50699 * 126.91314 * 359.97438 * 8 3 2 10 10 N 1.46906 * 109.47140 * 90.00133 * 9 8 3 11 11 C 1.46898 * 110.99888 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.46764 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.46962 * 54.99965 * 12 11 10 14 14 C 1.47200 * 109.47239 * 295.00110 * 12 11 10 15 15 N 5.40361 * 130.66378 * 121.11856 * 2 1 3 16 16 C 1.53003 * 109.46940 * 175.00201 * 12 11 10 17 17 C 1.50697 * 109.46842 * 185.00282 * 16 12 11 18 18 H 1.07995 * 120.00222 * 359.97438 * 17 16 12 19 19 C 1.37877 * 119.99781 * 180.02562 * 17 16 12 20 20 N 1.31517 * 119.99805 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00270 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46641 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47312 * 119.99383 * 21 19 17 24 24 H 1.48494 * 109.47359 * 240.00132 * 21 19 17 25 25 H 1.08994 * 109.47300 * 299.99787 * 1 2 3 26 26 H 1.09001 * 109.46727 * 60.00225 * 1 2 3 27 27 H 1.09003 * 109.46868 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47300 * 240.00212 * 2 1 3 29 29 H 1.09001 * 109.46727 * 119.99775 * 2 1 3 30 30 H 1.09005 * 109.47611 * 270.16311 * 7 6 5 31 31 H 1.09007 * 109.46877 * 30.16215 * 7 6 5 32 32 H 1.09001 * 109.47681 * 150.15860 * 7 6 5 33 33 H 1.09000 * 109.47247 * 330.00154 * 9 8 3 34 34 H 1.09001 * 109.47358 * 209.99580 * 9 8 3 35 35 H 1.00902 * 110.99923 * 303.95945 * 10 9 8 36 36 H 1.08995 * 109.47296 * 299.99911 * 11 10 9 37 37 H 1.08997 * 109.47334 * 60.00212 * 11 10 9 38 38 H 1.09007 * 109.46462 * 304.99730 * 16 12 11 39 39 H 1.08997 * 109.47218 * 64.99496 * 16 12 11 40 40 H 0.97005 * 119.99700 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2693 2.0925 -1.0430 5 7 2.6816 3.2602 -0.6951 6 6 2.7017 3.3322 0.6405 7 6 3.1134 4.5186 1.4735 8 6 2.2825 2.1287 1.0966 9 6 2.1333 1.7083 2.5360 10 7 3.3906 1.1096 3.0041 11 6 3.2819 0.6863 4.4066 12 6 4.6074 0.0687 4.8569 13 1 5.4171 0.7759 4.6779 14 6 4.8571 -1.1662 4.0956 15 7 5.0512 -2.1183 3.5091 16 6 4.5365 -0.2583 6.3499 17 6 5.8803 -0.7518 6.8204 18 1 6.7026 -0.8253 6.1242 19 6 6.0598 -1.1104 8.1396 20 7 5.0583 -1.0213 8.9873 21 14 7.7254 -1.7229 8.7228 22 1 8.6770 -1.7302 7.5827 23 1 8.2372 -0.8253 9.7894 24 1 7.5862 -3.1004 9.2596 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.1833 4.4669 1.6757 31 1 2.8899 5.4379 0.9321 32 1 2.5649 4.5092 2.4154 33 1 1.3295 0.9769 2.6195 34 1 1.8965 2.5797 3.1465 35 1 3.6656 0.3386 2.4142 36 1 3.0528 1.5503 5.0302 37 1 2.4862 -0.0524 4.5026 38 1 4.2639 0.6390 6.9057 39 1 3.7864 -1.0312 6.5174 40 1 5.1847 -1.2732 9.9155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336050155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:12 Heat of formation + Delta-G solvation = 82.774210 kcal Electronic energy + Delta-G solvation = -20911.498914 eV Core-core repulsion = 17762.055433 eV Total energy + Delta-G solvation = -3149.443480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.29492 -38.96297 -36.98744 -36.47362 -35.52212 -34.10646 -32.80008 -31.71161 -29.29885 -28.11604 -26.34043 -25.29089 -23.87878 -23.54886 -22.17921 -21.53786 -18.56706 -18.27841 -18.00517 -17.38544 -17.08577 -16.61134 -15.82307 -15.55904 -15.09263 -14.91091 -14.62744 -14.42393 -14.32514 -14.22735 -13.87902 -13.70889 -13.44020 -13.37192 -13.09658 -12.98336 -12.96012 -12.63919 -12.62018 -12.49365 -12.38298 -12.29777 -11.97187 -11.67793 -11.41040 -11.15724 -10.97581 -10.53411 -9.97075 -9.44804 -8.18496 -6.25493 0.53527 1.39354 1.40272 1.43428 1.51881 1.52771 1.94967 1.97909 2.42457 3.12688 3.17446 3.27085 3.37804 3.56235 3.76279 3.85499 3.94686 4.13971 4.18849 4.28534 4.45123 4.49841 4.66229 4.67745 4.75722 4.86885 4.93887 4.98607 5.00998 5.04108 5.08020 5.16170 5.47445 5.51139 5.62356 5.66943 5.81825 5.90927 6.16994 6.23414 6.76110 6.89863 7.43151 7.50230 8.92268 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.003463 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.510481 B = 8084.057617 C = 8482.126851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.280 5.280 4 N -0.117 5.117 5 N -0.310 5.310 6 C -0.015 4.015 7 C -0.062 4.062 8 C -0.015 4.015 9 C 0.137 3.863 10 N -0.687 5.687 11 C 0.080 3.920 12 C 0.017 3.983 13 H 0.121 0.879 14 C 0.250 3.750 15 N -0.507 5.507 16 C 0.038 3.962 17 C -0.538 4.538 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.921 5.921 21 Si 0.943 3.057 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.286 1.286 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.126 0.874 35 H 0.331 0.669 36 H 0.118 0.882 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.004 0.996 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.204 7.349 -12.215 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.076 5.076 4 N -0.095 5.095 5 N -0.175 5.175 6 C -0.155 4.155 7 C -0.121 4.121 8 C -0.148 4.148 9 C 0.006 3.994 10 N -0.318 5.318 11 C -0.050 4.050 12 C -0.005 4.005 13 H 0.139 0.861 14 C -0.066 4.066 15 N -0.184 5.184 16 C 0.000 4.000 17 C -0.576 4.576 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.561 5.561 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.199 1.199 24 H -0.212 1.212 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.022 0.978 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.670 6.495 -14.358 19.031 hybrid contribution 0.445 -1.321 1.550 2.084 sum -10.226 5.174 -12.808 17.187 Atomic orbital electron populations 1.22132 0.91361 1.05291 1.03158 1.22426 0.97641 0.75474 1.06668 1.47635 1.41773 1.13965 1.04209 1.78173 1.18689 0.99577 1.13048 1.74993 1.17652 1.11182 1.13720 1.22380 1.04447 0.97924 0.90762 1.20167 1.02471 0.91660 0.97787 1.22138 1.07844 0.92742 0.92095 1.20469 0.91009 1.01748 0.86128 1.60544 1.31623 1.36273 1.03352 1.21991 0.93756 1.00528 0.88682 1.19269 1.00607 0.86807 0.93793 0.86128 1.29717 0.91165 0.94557 0.91157 1.81008 1.10870 1.12701 1.13853 1.18994 0.95661 0.97345 0.88031 1.21593 0.97848 1.43602 0.94591 0.93095 1.25635 0.99579 0.95922 0.97348 1.70019 1.32336 1.49317 1.04437 0.85725 0.80904 0.77956 0.78467 1.19641 1.19876 1.21218 0.91395 0.92230 0.87420 0.86805 0.87147 0.90286 0.90701 0.88385 0.92047 0.85570 0.85233 0.86378 0.93752 0.94059 0.97782 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.24 71.98 0.74 -0.97 16 2 C 0.10 1.39 6.75 86.38 0.58 1.98 16 3 N -0.28 -6.11 3.34 -334.39 -1.12 -7.23 16 4 N -0.12 -3.31 13.16 37.02 0.49 -2.83 16 5 N -0.31 -9.23 12.41 -48.60 -0.60 -9.84 16 6 C -0.02 -0.37 7.25 41.60 0.30 -0.07 16 7 C -0.06 -1.07 10.26 71.23 0.73 -0.34 16 8 C -0.02 -0.32 6.51 41.36 0.27 -0.05 16 9 C 0.14 2.13 5.58 85.56 0.48 2.61 16 10 N -0.69 -13.80 6.49 -517.92 -3.36 -17.16 16 11 C 0.08 1.77 5.12 86.31 0.44 2.21 16 12 C 0.02 0.54 2.42 -12.60 -0.03 0.51 16 13 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 14 C 0.25 9.14 12.97 89.45 1.16 10.30 16 15 N -0.51 -20.42 18.53 19.99 0.37 -20.05 16 16 C 0.04 1.63 4.42 29.85 0.13 1.76 16 17 C -0.54 -27.32 8.60 25.60 0.22 -27.10 16 18 H 0.05 2.60 7.59 -2.91 -0.02 2.57 16 19 C 0.01 0.76 5.46 84.65 0.46 1.22 16 20 N -0.92 -50.95 13.29 21.45 0.28 -50.66 16 21 Si 0.94 42.38 29.54 68.60 2.03 44.41 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 1.35 7.72 -2.39 -0.02 1.34 16 30 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.10 1.20 7.31 -2.39 -0.02 1.18 16 33 H 0.06 0.77 7.81 -2.39 -0.02 0.75 16 34 H 0.13 1.51 7.30 -2.39 -0.02 1.49 16 35 H 0.33 7.46 7.80 -89.69 -0.70 6.77 16 36 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 Total: -1.00 -67.88 347.05 3.92 -63.96 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.34 Total: 7.32 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 5.48 Total: -7.93 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -3.94 Total: -107.77 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -67.88 3.92 -63.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336050155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.732 kcal (2) G-P(sol) polarization free energy of solvation -67.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds