Wall clock time and date at job start Mon Mar 30 2020 02:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46955 * 2 1 4 4 C 1.47205 * 109.46984 * 119.99829 * 2 1 3 5 5 N 2.60795 * 109.47118 * 120.00083 * 2 1 3 6 6 C 1.52991 * 109.47045 * 240.00114 * 2 1 3 7 7 N 1.46895 * 109.47453 * 65.14990 * 6 2 1 8 8 C 1.46900 * 111.00383 * 199.89031 * 7 6 2 9 9 C 1.38581 * 111.00222 * 75.93426 * 7 6 2 10 10 N 1.31224 * 126.46958 * 359.97438 * 9 7 6 11 11 N 1.28528 * 109.85851 * 180.02562 * 10 9 7 12 12 C 1.30293 * 110.05407 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.34681 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47265 * 90.02283 * 13 12 11 15 15 C 1.50704 * 109.47265 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99673 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00142 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99797 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46908 * 90.00072 * 19 17 15 21 21 H 1.48493 * 109.47098 * 209.99853 * 19 17 15 22 22 H 1.48499 * 109.47178 * 330.00523 * 19 17 15 23 23 N 1.36450 * 126.47620 * 180.29137 * 9 7 6 24 24 C 1.46498 * 127.13899 * 0.02562 * 23 9 7 25 25 H 1.09004 * 109.47064 * 175.01546 * 1 2 3 26 26 H 1.09001 * 109.47290 * 295.01158 * 1 2 3 27 27 H 1.08993 * 109.47238 * 55.00727 * 1 2 3 28 28 H 1.09001 * 109.47489 * 305.14656 * 6 2 1 29 29 H 1.09002 * 109.47562 * 185.15141 * 6 2 1 30 30 H 1.09005 * 109.46844 * 290.77955 * 8 7 6 31 31 H 1.09001 * 109.47335 * 50.77444 * 8 7 6 32 32 H 1.08996 * 109.47369 * 170.78137 * 8 7 6 33 33 H 1.09000 * 109.46844 * 330.02362 * 13 12 11 34 34 H 1.09000 * 109.47244 * 210.02257 * 13 12 11 35 35 H 1.09000 * 109.47348 * 59.99746 * 14 13 12 36 36 H 1.09001 * 109.47427 * 299.99874 * 14 13 12 37 37 H 0.97006 * 119.99486 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47045 * 270.19415 * 24 23 9 39 39 H 1.09000 * 109.47212 * 30.19236 * 24 23 9 40 40 H 1.08998 * 109.47655 * 150.20308 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2020 5 7 2.3993 -1.2294 2.1294 6 6 2.0400 -0.7212 -1.2492 7 7 1.6545 0.0393 -2.4454 8 6 1.6927 -0.8094 -3.6438 9 6 2.4574 1.1577 -2.6030 10 7 3.4404 1.5292 -1.8171 11 7 3.9688 2.6134 -2.2615 12 6 3.3590 2.9950 -3.3478 13 6 3.6800 4.2164 -4.1702 14 6 4.7122 3.8544 -5.2398 15 6 5.0327 5.0757 -6.0625 16 1 4.5487 6.0162 -5.8439 17 6 5.9443 4.9927 -7.0935 18 7 6.5347 3.8478 -7.3586 19 14 6.3410 6.5064 -8.1137 20 1 7.4789 7.2346 -7.4971 21 1 6.7069 6.0924 -9.4920 22 1 5.1527 7.3956 -8.1628 23 7 2.3714 2.0839 -3.6014 24 6 1.4193 2.0984 -4.7147 25 1 -0.3633 -1.0238 -0.0893 26 1 -0.3634 0.4345 0.9313 27 1 -0.3633 0.5893 -0.8418 28 1 1.6033 -1.7188 -1.2966 29 1 3.1261 -0.8018 -1.2043 30 1 2.7273 -1.0601 -3.8786 31 1 1.1301 -1.7244 -3.4592 32 1 1.2495 -0.2733 -4.4830 33 1 4.0851 4.9941 -3.5227 34 1 2.7715 4.5802 -4.6503 35 1 4.3071 3.0767 -5.8872 36 1 5.6207 3.4907 -4.7597 37 1 7.1758 3.7893 -8.0842 38 1 1.8374 1.5479 -5.5575 39 1 0.4866 1.6296 -4.4013 40 1 1.2258 3.1285 -5.0139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338399997.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:58 Heat of formation + Delta-G solvation = 106.006888 kcal Electronic energy + Delta-G solvation = -21313.787788 eV Core-core repulsion = 18165.351752 eV Total energy + Delta-G solvation = -3148.436036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.70031 -38.61657 -36.66692 -34.98366 -34.05023 -33.21864 -31.69967 -28.98899 -27.66071 -27.30040 -25.57317 -24.86497 -23.43452 -21.90369 -20.47780 -19.96672 -17.80790 -17.15544 -16.47576 -16.05937 -15.97854 -15.40573 -14.75921 -14.52667 -14.41131 -13.82704 -13.46432 -13.34231 -13.15502 -13.11912 -12.92516 -12.86304 -12.39523 -12.33896 -12.09015 -11.83640 -11.52419 -11.35060 -11.13001 -11.07315 -11.00715 -10.72050 -10.39740 -10.10891 -9.93251 -9.86219 -9.41254 -9.25114 -8.44812 -8.01682 -6.09354 -4.13564 2.01946 2.40195 2.64669 2.69178 3.18015 3.27355 3.34175 3.36187 3.50282 3.98089 4.37922 4.45549 4.60882 4.74701 4.82096 4.98483 5.02755 5.09095 5.16840 5.22180 5.26976 5.37058 5.39230 5.43657 5.55296 5.57689 5.66568 5.84252 5.92594 6.04172 6.30220 6.40313 6.50174 6.61707 6.84566 7.31674 7.44427 7.50784 7.64782 7.87952 8.25456 8.92643 9.13549 9.51401 11.01710 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.003489 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.873244 B = 8023.106956 C = 8269.739806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.007 3.993 3 H 0.124 0.876 4 C 0.220 3.780 5 N -0.439 5.439 6 C 0.077 3.923 7 N -0.449 5.449 8 C 0.018 3.982 9 C 0.328 3.672 10 N -0.323 5.323 11 N -0.293 5.293 12 C 0.215 3.785 13 C -0.031 4.031 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.273 1.273 23 N -0.480 5.480 24 C 0.076 3.924 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.013 0.987 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.042 -8.672 5.869 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.015 4.015 3 H 0.142 0.858 4 C -0.099 4.099 5 N -0.115 5.115 6 C -0.051 4.051 7 N -0.172 5.172 8 C -0.130 4.130 9 C -0.029 4.029 10 N -0.168 5.168 11 N -0.131 5.131 12 C -0.053 4.053 13 C -0.071 4.071 14 C -0.006 4.006 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.175 5.175 24 C -0.067 4.067 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.875 -9.444 8.358 19.501 hybrid contribution -0.034 0.676 -2.289 2.387 sum -14.909 -8.767 6.069 18.330 Atomic orbital electron populations 1.21732 0.91507 1.02990 1.03154 1.18795 0.97240 1.00193 0.85236 0.85828 1.29017 0.93012 0.93368 0.94478 1.81199 1.08973 1.09785 1.11542 1.22033 1.01246 0.95539 0.86307 1.58591 1.47995 1.05269 1.05354 1.22670 1.02037 0.97179 0.91085 1.22480 0.96011 0.93777 0.90629 1.74475 1.06642 1.10168 1.25480 1.74017 1.22476 1.07291 1.09363 1.25570 0.87740 0.95790 0.96183 1.20447 1.01275 0.88933 0.96446 1.19062 0.92964 0.97156 0.91419 1.21143 1.24435 0.95715 1.14987 0.92273 1.25012 0.95832 0.96028 0.97378 1.69972 1.28032 1.24568 1.30544 0.86557 0.78832 0.82975 0.79427 1.20509 1.21248 1.19784 1.46041 1.28511 1.20379 1.22587 1.22103 0.91643 1.05322 0.87602 0.92033 0.92223 0.89927 0.88847 0.91018 0.93759 0.89409 0.90199 0.89260 0.91191 0.96819 0.95668 0.92858 0.90190 0.89301 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.98 37.16 0.33 -0.61 16 2 C 0.01 0.07 2.74 -93.41 -0.26 -0.19 16 3 H 0.12 1.42 6.84 -51.93 -0.36 1.07 16 4 C 0.22 2.54 14.64 -20.76 -0.30 2.24 16 5 N -0.44 -6.21 18.54 42.15 0.78 -5.43 16 6 C 0.08 0.72 4.04 -3.83 -0.02 0.70 16 7 N -0.45 -4.52 4.30 -182.39 -0.78 -5.30 16 8 C 0.02 0.14 9.32 60.06 0.56 0.70 16 9 C 0.33 4.72 6.72 -318.87 -2.14 2.58 16 10 N -0.32 -5.76 10.04 30.32 0.30 -5.46 16 11 N -0.29 -5.97 12.18 32.99 0.40 -5.57 16 12 C 0.21 3.97 7.32 -154.01 -1.13 2.84 16 13 C -0.03 -0.60 5.53 -27.88 -0.15 -0.75 16 14 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 15 C -0.52 -13.94 9.11 -34.44 -0.31 -14.26 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 N -0.48 -7.12 3.21 -121.46 -0.39 -7.51 16 24 C 0.08 0.80 9.38 59.85 0.56 1.36 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.58 7.90 -51.93 -0.41 0.17 16 28 H 0.09 0.61 7.74 -51.93 -0.40 0.20 16 29 H 0.07 0.82 7.50 -51.93 -0.39 0.44 16 30 H 0.04 0.43 8.11 -51.93 -0.42 0.01 16 31 H 0.09 0.45 7.85 -51.93 -0.41 0.05 16 32 H 0.08 0.58 5.66 -51.93 -0.29 0.28 16 33 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.07 1.18 7.26 -51.93 -0.38 0.81 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 39 H 0.09 0.67 7.53 -51.93 -0.39 0.28 16 40 H 0.09 0.94 7.24 -51.93 -0.38 0.57 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -33.40 338.94 -7.85 -41.25 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -5.89 Total: -4.40 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -3.09 Total: -3.20 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 1.05 Total: -54.51 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.40 -7.85 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338399997.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.258 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds