Wall clock time and date at job start Mon Mar 30 2020 02:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46955 * 2 1 4 4 C 1.47205 * 109.46984 * 119.99829 * 2 1 3 5 5 N 2.60795 * 109.47118 * 120.00083 * 2 1 3 6 6 C 1.52991 * 109.47045 * 240.00114 * 2 1 3 7 7 N 1.46895 * 109.47453 * 65.14990 * 6 2 1 8 8 C 1.46900 * 111.00383 * 199.89031 * 7 6 2 9 9 C 1.38581 * 111.00222 * 75.93426 * 7 6 2 10 10 N 1.31224 * 126.46958 * 359.97438 * 9 7 6 11 11 N 1.28528 * 109.85851 * 180.02562 * 10 9 7 12 12 C 1.30293 * 110.05407 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.34681 * 180.02562 * 12 11 10 14 14 C 1.52993 * 109.47265 * 90.02283 * 13 12 11 15 15 C 1.50704 * 109.47265 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99673 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00142 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99797 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46908 * 90.00072 * 19 17 15 21 21 H 1.48493 * 109.47098 * 209.99853 * 19 17 15 22 22 H 1.48499 * 109.47178 * 330.00523 * 19 17 15 23 23 N 1.36450 * 126.47620 * 180.29137 * 9 7 6 24 24 C 1.46498 * 127.13899 * 0.02562 * 23 9 7 25 25 H 1.09004 * 109.47064 * 175.01546 * 1 2 3 26 26 H 1.09001 * 109.47290 * 295.01158 * 1 2 3 27 27 H 1.08993 * 109.47238 * 55.00727 * 1 2 3 28 28 H 1.09001 * 109.47489 * 305.14656 * 6 2 1 29 29 H 1.09002 * 109.47562 * 185.15141 * 6 2 1 30 30 H 1.09005 * 109.46844 * 290.77955 * 8 7 6 31 31 H 1.09001 * 109.47335 * 50.77444 * 8 7 6 32 32 H 1.08996 * 109.47369 * 170.78137 * 8 7 6 33 33 H 1.09000 * 109.46844 * 330.02362 * 13 12 11 34 34 H 1.09000 * 109.47244 * 210.02257 * 13 12 11 35 35 H 1.09000 * 109.47348 * 59.99746 * 14 13 12 36 36 H 1.09001 * 109.47427 * 299.99874 * 14 13 12 37 37 H 0.97006 * 119.99486 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.47045 * 270.19415 * 24 23 9 39 39 H 1.09000 * 109.47212 * 30.19236 * 24 23 9 40 40 H 1.08998 * 109.47655 * 150.20308 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2020 5 7 2.3993 -1.2294 2.1294 6 6 2.0400 -0.7212 -1.2492 7 7 1.6545 0.0393 -2.4454 8 6 1.6927 -0.8094 -3.6438 9 6 2.4574 1.1577 -2.6030 10 7 3.4404 1.5292 -1.8171 11 7 3.9688 2.6134 -2.2615 12 6 3.3590 2.9950 -3.3478 13 6 3.6800 4.2164 -4.1702 14 6 4.7122 3.8544 -5.2398 15 6 5.0327 5.0757 -6.0625 16 1 4.5487 6.0162 -5.8439 17 6 5.9443 4.9927 -7.0935 18 7 6.5347 3.8478 -7.3586 19 14 6.3410 6.5064 -8.1137 20 1 7.4789 7.2346 -7.4971 21 1 6.7069 6.0924 -9.4920 22 1 5.1527 7.3956 -8.1628 23 7 2.3714 2.0839 -3.6014 24 6 1.4193 2.0984 -4.7147 25 1 -0.3633 -1.0238 -0.0893 26 1 -0.3634 0.4345 0.9313 27 1 -0.3633 0.5893 -0.8418 28 1 1.6033 -1.7188 -1.2966 29 1 3.1261 -0.8018 -1.2043 30 1 2.7273 -1.0601 -3.8786 31 1 1.1301 -1.7244 -3.4592 32 1 1.2495 -0.2733 -4.4830 33 1 4.0851 4.9941 -3.5227 34 1 2.7715 4.5802 -4.6503 35 1 4.3071 3.0767 -5.8872 36 1 5.6207 3.4907 -4.7597 37 1 7.1758 3.7893 -8.0842 38 1 1.8374 1.5479 -5.5575 39 1 0.4866 1.6296 -4.4013 40 1 1.2258 3.1285 -5.0139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338399997.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:58 Heat of formation + Delta-G solvation = 86.710047 kcal Electronic energy + Delta-G solvation = -21314.624562 eV Core-core repulsion = 18165.351752 eV Total energy + Delta-G solvation = -3149.272810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.95079 -39.49952 -37.64912 -36.34261 -35.63053 -34.25082 -33.38986 -30.40726 -28.70559 -28.05979 -27.12637 -25.88412 -24.32660 -23.68229 -21.56577 -21.36971 -18.67153 -18.61656 -18.01763 -17.25493 -17.02967 -16.46341 -16.35883 -15.64680 -15.29242 -15.04801 -14.85391 -14.48920 -14.23797 -14.14396 -13.93351 -13.90993 -13.68425 -13.31997 -13.11629 -12.85456 -12.74726 -12.64958 -12.50177 -12.37520 -12.20105 -11.98432 -11.85731 -11.73965 -11.43369 -11.28679 -11.06596 -10.63247 -10.54937 -9.23295 -8.18708 -6.30483 0.83256 1.31872 1.44793 1.46435 1.56738 1.68397 1.75606 1.86519 2.43676 2.55757 3.08337 3.16003 3.56409 3.71221 3.82975 3.95495 4.03751 4.17128 4.31596 4.35961 4.43008 4.51715 4.63274 4.68373 4.73157 4.76168 4.83651 4.92034 4.96805 5.01702 5.10558 5.15055 5.40857 5.47395 5.52075 5.61114 5.65674 5.81174 6.17575 6.23035 6.52185 6.86002 7.39653 7.82773 8.93190 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.003489 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.873244 B = 8023.106956 C = 8269.739806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.013 3.987 3 H 0.102 0.898 4 C 0.243 3.757 5 N -0.486 5.486 6 C 0.076 3.924 7 N -0.432 5.432 8 C 0.013 3.987 9 C 0.348 3.652 10 N -0.358 5.358 11 N -0.334 5.334 12 C 0.195 3.805 13 C -0.014 4.014 14 C 0.043 3.957 15 C -0.538 4.538 16 H 0.072 0.928 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.255 1.255 23 N -0.477 5.477 24 C 0.067 3.933 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.046 0.954 30 H 0.024 0.976 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.098 0.902 35 H -0.003 1.003 36 H -0.020 1.020 37 H 0.263 0.737 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.846 -8.797 4.884 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.009 4.009 3 H 0.120 0.880 4 C -0.075 4.075 5 N -0.163 5.163 6 C -0.052 4.052 7 N -0.155 5.155 8 C -0.133 4.133 9 C -0.009 4.009 10 N -0.203 5.203 11 N -0.172 5.172 12 C -0.074 4.074 13 C -0.054 4.054 14 C 0.005 3.995 15 C -0.576 4.576 16 H 0.091 0.909 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.179 1.179 23 N -0.171 5.171 24 C -0.074 4.074 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.151 0.849 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.015 0.985 36 H -0.002 1.002 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.712 -9.569 7.368 21.438 hybrid contribution 0.779 0.610 -1.966 2.201 sum -16.934 -8.959 5.402 19.905 Atomic orbital electron populations 1.21726 0.88921 1.04456 1.03541 1.18861 0.99104 0.98577 0.84391 0.87984 1.29370 0.91664 0.92283 0.94174 1.81219 1.10589 1.11433 1.13050 1.22160 1.00130 0.97155 0.85799 1.58773 1.45712 1.04476 1.06587 1.22884 1.01683 0.98455 0.90310 1.22928 0.94652 0.94242 0.89096 1.74381 1.08554 1.10148 1.27177 1.73900 1.23922 1.08675 1.10720 1.25217 0.89311 0.96540 0.96325 1.20107 1.00832 0.89422 0.95048 1.18825 0.92506 0.96046 0.92113 1.21621 1.24257 0.96741 1.14942 0.90944 1.25969 0.95756 0.99105 0.98853 1.70120 1.28940 1.27039 1.31394 0.85436 0.79014 0.79143 0.77394 1.20403 1.21083 1.17891 1.46176 1.28215 1.19374 1.23375 1.22489 0.92051 1.06407 0.86494 0.90003 0.92042 0.89365 0.84912 0.93536 0.95696 0.85445 0.89010 0.89710 0.88343 0.98464 1.00193 0.92873 0.89909 0.85664 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.98 71.98 0.65 -0.75 16 2 C 0.01 0.22 2.74 -12.60 -0.03 0.19 16 3 H 0.10 2.32 6.84 -2.39 -0.02 2.31 16 4 C 0.24 5.45 14.64 89.44 1.31 6.76 16 5 N -0.49 -13.71 18.54 20.01 0.37 -13.34 16 6 C 0.08 1.25 4.04 86.30 0.35 1.59 16 7 N -0.43 -7.56 4.30 -730.94 -3.15 -10.70 16 8 C 0.01 0.16 9.32 127.69 1.19 1.35 16 9 C 0.35 9.71 6.72 260.11 1.75 11.46 16 10 N -0.36 -13.05 10.04 -58.00 -0.58 -13.63 16 11 N -0.33 -14.07 12.18 -49.53 -0.60 -14.67 16 12 C 0.20 7.32 7.32 137.64 1.01 8.33 16 13 C -0.01 -0.56 5.53 29.85 0.16 -0.40 16 14 C 0.04 2.19 4.95 29.85 0.15 2.34 16 15 C -0.54 -28.72 9.11 25.60 0.23 -28.49 16 16 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 17 C 0.00 0.06 5.46 84.65 0.46 0.52 16 18 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 19 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 23 N -0.48 -13.64 3.21 -538.18 -1.73 -15.37 16 24 C 0.07 1.22 9.38 127.77 1.20 2.42 16 25 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.09 0.91 7.90 -2.39 -0.02 0.89 16 28 H 0.13 1.18 7.74 -2.39 -0.02 1.16 16 29 H 0.05 1.04 7.50 -2.39 -0.02 1.03 16 30 H 0.02 0.43 8.11 -2.38 -0.02 0.41 16 31 H 0.13 0.65 7.85 -2.39 -0.02 0.64 16 32 H 0.09 0.97 5.66 -2.39 -0.01 0.95 16 33 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.10 3.20 7.26 -2.39 -0.02 3.18 16 35 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 37 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 38 H 0.08 1.50 7.94 -2.38 -0.02 1.48 16 39 H 0.13 1.36 7.53 -2.39 -0.02 1.34 16 40 H 0.10 1.75 7.24 -2.39 -0.02 1.73 16 Total: -1.00 -76.31 338.94 6.08 -70.23 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 1.04 Total: 3.08 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 8.42 Total: 5.33 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -5.40 Total: -123.07 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -76.31 6.08 -70.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338399997.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.938 kcal (2) G-P(sol) polarization free energy of solvation -76.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds