Wall clock time and date at job start Mon Mar 30 2020 01:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 119.99956 * 2 1 4 4 O 1.21298 * 119.99788 * 185.33962 * 3 2 1 5 5 C 1.50694 * 120.00038 * 5.33621 * 3 2 1 6 6 H 1.09005 * 109.47435 * 320.00135 * 5 3 2 7 7 N 1.46898 * 109.47130 * 200.00180 * 5 3 2 8 8 C 1.53002 * 109.47075 * 80.00291 * 5 3 2 9 9 C 1.53001 * 109.47245 * 185.00136 * 8 5 3 10 10 C 1.50693 * 109.47215 * 179.97438 * 9 8 5 11 11 H 1.08002 * 119.99939 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00258 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00554 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99702 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47516 * 89.99899 * 14 12 10 16 16 H 1.48498 * 109.47224 * 209.99924 * 14 12 10 17 17 H 1.48501 * 109.47407 * 329.99832 * 14 12 10 18 18 C 1.40145 * 120.00174 * 179.97438 * 2 1 3 19 19 C 1.38857 * 119.99761 * 114.27147 * 18 2 1 20 20 C 1.38057 * 120.00461 * 179.97438 * 19 18 2 21 21 C 1.38892 * 119.99847 * 0.02562 * 20 19 18 22 22 N 1.39886 * 120.00329 * 179.97438 * 21 20 19 23 23 C 1.38889 * 119.98918 * 0.25513 * 21 20 19 24 24 C 1.38062 * 119.99191 * 359.49337 * 23 21 20 25 25 H 1.08998 * 109.46929 * 270.00067 * 1 2 3 26 26 H 1.09004 * 109.46809 * 30.00123 * 1 2 3 27 27 H 1.09000 * 109.46963 * 149.99980 * 1 2 3 28 28 H 1.00900 * 111.00137 * 176.05192 * 7 5 3 29 29 H 1.00900 * 110.99989 * 299.99856 * 7 5 3 30 30 H 1.08997 * 109.46595 * 304.99750 * 8 5 3 31 31 H 1.08991 * 109.47477 * 64.99852 * 8 5 3 32 32 H 1.09000 * 109.46920 * 299.99888 * 9 8 5 33 33 H 1.09004 * 109.47357 * 59.99203 * 9 8 5 34 34 H 0.96992 * 120.00251 * 179.97438 * 13 12 10 35 35 H 1.08004 * 119.99785 * 359.96257 * 19 18 2 36 36 H 1.08005 * 120.00140 * 179.97438 * 20 19 18 37 37 H 0.96995 * 120.00420 * 0.02562 * 22 21 20 38 38 H 0.97004 * 119.99970 * 179.72707 * 22 21 20 39 39 H 1.07995 * 120.00125 * 179.74327 * 23 21 20 40 40 H 1.08005 * 119.99489 * 180.23928 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3479 1.1695 -0.0978 5 6 1.3903 2.4695 0.1214 6 1 0.4763 2.4197 -0.4705 7 7 2.2336 3.5668 -0.3714 8 6 1.0350 2.7186 1.5885 9 6 0.1686 3.9750 1.6972 10 6 -0.1819 4.2201 3.1422 11 1 0.1771 3.5468 3.9066 12 6 -0.9607 5.3038 3.4885 13 7 -1.2670 5.5175 4.7495 14 14 -1.5809 6.4687 2.1665 15 1 -2.8977 5.9964 1.6685 16 1 -1.7275 7.8319 2.7370 17 1 -0.6105 6.5041 1.0430 18 6 2.1658 -1.2137 0.0005 19 6 2.9410 -1.5682 -1.0956 20 6 3.6318 -2.7635 -1.0950 21 6 3.5509 -3.6117 0.0019 22 7 4.2504 -4.8232 0.0024 23 6 2.7708 -3.2597 1.0957 24 6 2.0843 -2.0618 1.0969 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.7312 4.4418 -0.3606 29 1 3.0877 3.6337 0.1615 30 1 0.4846 1.8629 1.9794 31 1 1.9493 2.8568 2.1654 32 1 0.7190 4.8308 1.3063 33 1 -0.7458 3.8369 1.1202 34 1 -1.8146 6.2800 4.9931 35 1 3.0034 -0.9089 -1.9487 36 1 4.2344 -3.0394 -1.9477 37 1 4.7922 -5.0707 -0.7631 38 1 4.1971 -5.4137 0.7701 39 1 2.7045 -3.9210 1.9469 40 1 1.4807 -1.7862 1.9491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349612855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:12 Heat of formation + Delta-G solvation = -7.909672 kcal Electronic energy + Delta-G solvation = -21196.600849 eV Core-core repulsion = 18010.932270 eV Total energy + Delta-G solvation = -3185.668580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44406 -38.85644 -36.02189 -35.50543 -33.66712 -32.77948 -30.98422 -30.30840 -28.69255 -26.97046 -26.15857 -23.92738 -22.90216 -21.80914 -20.33755 -19.13727 -17.58587 -17.28121 -17.02096 -16.80783 -16.46333 -15.17590 -14.73156 -14.51066 -14.24310 -14.08971 -13.91888 -13.53266 -13.35412 -13.23426 -13.13198 -12.69964 -12.62602 -12.48822 -12.27562 -11.72168 -11.34638 -11.21248 -10.95052 -10.68973 -10.32923 -10.04886 -9.88050 -9.36286 -9.30554 -8.99492 -8.83381 -8.61593 -8.30635 -7.50702 -6.11120 -4.10601 1.37419 1.44711 2.87325 3.05893 3.25252 3.33867 3.35134 3.67083 3.77027 4.38125 4.78742 4.85495 4.91352 5.04623 5.11037 5.21894 5.33205 5.35132 5.44544 5.55208 5.60971 5.62650 5.81605 5.97795 5.99192 6.17207 6.19506 6.33923 6.53322 6.58854 6.66855 6.96971 7.10559 7.22330 7.27417 7.35904 7.53429 7.53628 7.67560 7.79602 8.42882 8.45778 8.93096 9.50131 11.02153 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.003616 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.008387 B = 7742.175764 C = 8152.365510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.574 5.574 3 C 0.527 3.473 4 O -0.524 6.524 5 C 0.072 3.928 6 H 0.099 0.901 7 N -0.831 5.831 8 C -0.129 4.129 9 C -0.010 4.010 10 C -0.523 4.523 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.901 5.901 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.265 1.265 18 C 0.088 3.912 19 C -0.054 4.054 20 C -0.189 4.189 21 C 0.210 3.790 22 N -0.881 5.881 23 C -0.189 4.189 24 C -0.071 4.071 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.351 0.649 29 H 0.348 0.652 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.396 0.604 38 H 0.397 0.603 39 H 0.122 0.878 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.700 -18.376 -11.830 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.305 5.305 3 C 0.316 3.684 4 O -0.398 6.398 5 C -0.043 4.043 6 H 0.117 0.883 7 N -0.363 5.363 8 C -0.168 4.168 9 C -0.047 4.047 10 C -0.561 4.561 11 H 0.089 0.911 12 C -0.135 4.135 13 N -0.540 5.540 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.004 4.004 19 C -0.075 4.075 20 C -0.212 4.212 21 C 0.106 3.894 22 N -0.421 5.421 23 C -0.212 4.212 24 C -0.091 4.091 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.165 0.835 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.224 0.776 38 H 0.225 0.775 39 H 0.140 0.860 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.240 -18.562 -12.459 23.210 hybrid contribution -0.481 0.736 0.535 1.029 sum 5.758 -17.826 -11.924 22.206 Atomic orbital electron populations 1.21970 0.78443 1.03326 1.02804 1.45330 1.06850 1.03778 1.74512 1.20922 0.87946 0.84863 0.74653 1.90655 1.14340 1.86965 1.47843 1.21574 0.95840 0.89087 0.97795 0.88321 1.58756 1.09022 1.07518 1.61044 1.22182 1.01155 1.01081 0.92418 1.19569 0.94360 0.92489 0.98289 1.21065 1.32137 1.11530 0.91368 0.91075 1.25044 0.95652 0.97473 0.95283 1.69908 1.38026 1.29564 1.16474 0.86762 0.79611 0.80412 0.82374 1.20247 1.21366 1.18951 1.17348 1.00309 0.87920 0.94790 1.20956 0.94721 0.94837 0.96947 1.20418 1.06119 0.95921 0.98782 1.17804 0.91291 0.86427 0.93878 1.42481 1.55612 1.20760 1.23221 1.20405 1.03051 0.99005 0.98745 1.20993 0.98133 0.93511 0.96505 0.91715 0.90215 0.91026 0.83460 0.83854 0.91797 0.92084 0.96603 0.96790 0.92634 0.86030 0.86109 0.77571 0.77546 0.85986 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 9.61 59.85 0.57 1.44 16 2 N -0.57 -8.27 2.94 -120.77 -0.35 -8.63 16 3 C 0.53 9.05 6.80 -10.99 -0.07 8.97 16 4 O -0.52 -10.58 15.75 5.54 0.09 -10.49 16 5 C 0.07 1.19 2.52 -68.87 -0.17 1.02 16 6 H 0.10 1.47 6.21 -51.93 -0.32 1.15 16 7 N -0.83 -13.77 8.94 -5.65 -0.05 -13.82 16 8 C -0.13 -2.46 4.73 -26.73 -0.13 -2.58 16 9 C -0.01 -0.22 3.81 -27.89 -0.11 -0.32 16 10 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 14 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 18 C 0.09 1.24 4.88 -83.60 -0.41 0.83 16 19 C -0.05 -0.73 9.22 -39.42 -0.36 -1.09 16 20 C -0.19 -2.13 9.89 -39.41 -0.39 -2.52 16 21 C 0.21 2.18 6.76 -83.70 -0.57 1.61 16 22 N -0.88 -6.07 9.10 32.45 0.30 -5.77 16 23 C -0.19 -2.06 9.89 -39.40 -0.39 -2.45 16 24 C -0.07 -0.90 9.82 -39.42 -0.39 -1.28 16 25 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 26 H 0.08 0.85 6.02 -51.93 -0.31 0.53 16 27 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 28 H 0.35 5.58 7.55 -39.29 -0.30 5.28 16 29 H 0.35 5.92 8.58 -39.29 -0.34 5.58 16 30 H 0.06 1.19 7.24 -51.93 -0.38 0.81 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.35 5.92 -51.93 -0.31 0.04 16 33 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.40 2.04 8.84 -40.82 -0.36 1.68 16 38 H 0.40 2.04 8.84 -40.82 -0.36 1.67 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -33.57 331.16 -7.35 -40.92 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.59 Total: 12.41 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.84 Total: -9.36 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.66 Total: -54.82 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.57 -7.35 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349612855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.013 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds