Wall clock time and date at job start Mon Mar 30 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 119.99956 * 2 1 4 4 O 1.21298 * 119.99788 * 185.33962 * 3 2 1 5 5 C 1.50694 * 120.00038 * 5.33621 * 3 2 1 6 6 H 1.09005 * 109.47435 * 320.00135 * 5 3 2 7 7 N 1.46898 * 109.47130 * 200.00180 * 5 3 2 8 8 C 1.53002 * 109.47075 * 80.00291 * 5 3 2 9 9 C 1.53001 * 109.47245 * 185.00136 * 8 5 3 10 10 C 1.50693 * 109.47215 * 179.97438 * 9 8 5 11 11 H 1.08002 * 119.99939 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00258 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00554 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99702 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47516 * 89.99899 * 14 12 10 16 16 H 1.48498 * 109.47224 * 209.99924 * 14 12 10 17 17 H 1.48501 * 109.47407 * 329.99832 * 14 12 10 18 18 C 1.40145 * 120.00174 * 179.97438 * 2 1 3 19 19 C 1.38857 * 119.99761 * 114.27147 * 18 2 1 20 20 C 1.38057 * 120.00461 * 179.97438 * 19 18 2 21 21 C 1.38892 * 119.99847 * 0.02562 * 20 19 18 22 22 N 1.39886 * 120.00329 * 179.97438 * 21 20 19 23 23 C 1.38889 * 119.98918 * 0.25513 * 21 20 19 24 24 C 1.38062 * 119.99191 * 359.49337 * 23 21 20 25 25 H 1.08998 * 109.46929 * 270.00067 * 1 2 3 26 26 H 1.09004 * 109.46809 * 30.00123 * 1 2 3 27 27 H 1.09000 * 109.46963 * 149.99980 * 1 2 3 28 28 H 1.00900 * 111.00137 * 176.05192 * 7 5 3 29 29 H 1.00900 * 110.99989 * 299.99856 * 7 5 3 30 30 H 1.08997 * 109.46595 * 304.99750 * 8 5 3 31 31 H 1.08991 * 109.47477 * 64.99852 * 8 5 3 32 32 H 1.09000 * 109.46920 * 299.99888 * 9 8 5 33 33 H 1.09004 * 109.47357 * 59.99203 * 9 8 5 34 34 H 0.96992 * 120.00251 * 179.97438 * 13 12 10 35 35 H 1.08004 * 119.99785 * 359.96257 * 19 18 2 36 36 H 1.08005 * 120.00140 * 179.97438 * 20 19 18 37 37 H 0.96995 * 120.00420 * 0.02562 * 22 21 20 38 38 H 0.97004 * 119.99970 * 179.72707 * 22 21 20 39 39 H 1.07995 * 120.00125 * 179.74327 * 23 21 20 40 40 H 1.08005 * 119.99489 * 180.23928 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3479 1.1695 -0.0978 5 6 1.3903 2.4695 0.1214 6 1 0.4763 2.4197 -0.4705 7 7 2.2336 3.5668 -0.3714 8 6 1.0350 2.7186 1.5885 9 6 0.1686 3.9750 1.6972 10 6 -0.1819 4.2201 3.1422 11 1 0.1771 3.5468 3.9066 12 6 -0.9607 5.3038 3.4885 13 7 -1.2670 5.5175 4.7495 14 14 -1.5809 6.4687 2.1665 15 1 -2.8977 5.9964 1.6685 16 1 -1.7275 7.8319 2.7370 17 1 -0.6105 6.5041 1.0430 18 6 2.1658 -1.2137 0.0005 19 6 2.9410 -1.5682 -1.0956 20 6 3.6318 -2.7635 -1.0950 21 6 3.5509 -3.6117 0.0019 22 7 4.2504 -4.8232 0.0024 23 6 2.7708 -3.2597 1.0957 24 6 2.0843 -2.0618 1.0969 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.7312 4.4418 -0.3606 29 1 3.0877 3.6337 0.1615 30 1 0.4846 1.8629 1.9794 31 1 1.9493 2.8568 2.1654 32 1 0.7190 4.8308 1.3063 33 1 -0.7458 3.8369 1.1202 34 1 -1.8146 6.2800 4.9931 35 1 3.0034 -0.9089 -1.9487 36 1 4.2344 -3.0394 -1.9477 37 1 4.7922 -5.0707 -0.7631 38 1 4.1971 -5.4137 0.7701 39 1 2.7045 -3.9210 1.9469 40 1 1.4807 -1.7862 1.9491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349612855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:11 Heat of formation + Delta-G solvation = -33.067334 kcal Electronic energy + Delta-G solvation = -21197.691767 eV Core-core repulsion = 18010.932270 eV Total energy + Delta-G solvation = -3186.759498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58366 -39.87066 -37.26535 -36.84428 -34.86743 -34.44439 -32.08253 -31.87597 -29.66506 -28.32672 -27.36272 -25.47416 -23.80566 -22.98485 -21.94720 -20.33749 -19.06266 -18.58201 -18.16785 -17.78360 -17.56374 -16.38307 -16.21888 -15.88745 -15.80212 -15.24005 -15.08562 -14.69156 -14.65586 -14.50980 -14.24197 -14.04121 -13.81160 -13.62607 -13.40609 -13.22792 -12.92169 -12.61757 -12.10309 -12.08885 -11.83554 -11.66399 -11.51475 -11.39867 -10.75980 -10.74775 -9.91059 -9.89627 -9.67274 -8.31915 -8.28606 -6.34251 0.47102 0.51742 1.39559 1.42063 1.53060 1.56747 1.96984 2.37759 2.85998 3.03167 3.07022 3.59024 3.70538 3.96276 4.00262 4.06444 4.12714 4.30069 4.43368 4.52074 4.59081 4.66768 4.71276 4.74923 4.90728 4.96521 5.08560 5.13782 5.33787 5.37020 5.46841 5.59220 5.63479 5.66982 5.96891 6.08313 6.26248 6.33780 6.48287 6.58970 6.74132 7.03172 7.18812 7.30555 8.88291 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.003616 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.008387 B = 7742.175764 C = 8152.365510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.566 5.566 3 C 0.522 3.478 4 O -0.563 6.563 5 C 0.082 3.918 6 H 0.123 0.877 7 N -0.830 5.830 8 C -0.116 4.116 9 C -0.004 4.004 10 C -0.534 4.534 11 H 0.025 0.975 12 C 0.002 3.998 13 N -0.954 5.954 14 Si 0.954 3.046 15 H -0.263 1.263 16 H -0.291 1.291 17 H -0.238 1.238 18 C 0.057 3.943 19 C -0.068 4.068 20 C -0.195 4.195 21 C 0.215 3.785 22 N -0.866 5.866 23 C -0.193 4.193 24 C -0.080 4.080 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.356 0.644 29 H 0.344 0.656 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.033 0.967 34 H 0.266 0.734 35 H 0.111 0.889 36 H 0.141 0.859 37 H 0.407 0.593 38 H 0.408 0.592 39 H 0.145 0.855 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -19.422 -14.007 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.296 5.296 3 C 0.311 3.689 4 O -0.440 6.440 5 C -0.033 4.033 6 H 0.141 0.859 7 N -0.362 5.362 8 C -0.156 4.156 9 C -0.041 4.041 10 C -0.572 4.572 11 H 0.043 0.957 12 C -0.194 4.194 13 N -0.594 5.594 14 Si 0.777 3.223 15 H -0.188 1.188 16 H -0.217 1.217 17 H -0.161 1.161 18 C -0.035 4.035 19 C -0.089 4.089 20 C -0.218 4.218 21 C 0.109 3.891 22 N -0.406 5.406 23 C -0.216 4.216 24 C -0.101 4.101 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.171 0.829 29 H 0.157 0.843 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.129 0.871 36 H 0.159 0.841 37 H 0.237 0.763 38 H 0.238 0.762 39 H 0.162 0.838 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.936 -19.680 -14.652 25.243 hybrid contribution -0.326 0.880 1.305 1.608 sum 5.609 -18.800 -13.347 23.729 Atomic orbital electron populations 1.22191 0.76692 1.04938 1.03316 1.45350 1.07977 1.03328 1.72899 1.21012 0.87557 0.85754 0.74570 1.90627 1.15822 1.87572 1.49998 1.21489 0.96725 0.89093 0.95961 0.85917 1.58770 1.08911 1.07795 1.60737 1.21982 0.99520 0.99785 0.94306 1.19489 0.95677 0.94150 0.94826 1.21424 1.31717 1.10702 0.93356 0.95657 1.26083 0.95913 0.99599 0.97837 1.70080 1.39436 1.30676 1.19237 0.85602 0.79929 0.77184 0.79595 1.18779 1.21679 1.16081 1.17574 1.01878 0.88168 0.95913 1.20987 0.95451 0.95725 0.96711 1.20635 1.05953 0.95376 0.99847 1.17896 0.90802 0.87183 0.93233 1.42464 1.54508 1.19498 1.24106 1.20667 1.02537 0.98725 0.99671 1.21091 0.98677 0.94112 0.96178 0.91684 0.89220 0.88866 0.82894 0.84281 0.91741 0.94339 0.95662 0.94867 0.92526 0.87063 0.84133 0.76293 0.76228 0.83773 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.47 9.61 127.77 1.23 2.70 16 2 N -0.57 -16.03 2.94 -654.37 -1.92 -17.95 16 3 C 0.52 17.76 6.80 87.65 0.60 18.36 16 4 O -0.56 -22.99 15.75 -3.08 -0.05 -23.04 16 5 C 0.08 2.62 2.52 44.17 0.11 2.73 16 6 H 0.12 3.32 6.21 -2.38 -0.01 3.30 16 7 N -0.83 -26.40 8.94 -171.80 -1.54 -27.93 16 8 C -0.12 -4.39 4.73 30.60 0.14 -4.25 16 9 C 0.00 -0.17 3.81 29.85 0.11 -0.06 16 10 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 11 H 0.03 1.59 7.99 -2.91 -0.02 1.57 16 12 C 0.00 0.13 5.47 84.66 0.46 0.59 16 13 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 14 Si 0.95 42.38 27.47 68.60 1.88 44.26 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 16 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 18 C 0.06 1.57 4.88 38.11 0.19 1.76 16 19 C -0.07 -1.81 9.22 22.38 0.21 -1.60 16 20 C -0.19 -4.11 9.89 22.38 0.22 -3.89 16 21 C 0.22 4.00 6.76 38.17 0.26 4.26 16 22 N -0.87 -9.42 9.10 -51.26 -0.47 -9.89 16 23 C -0.19 -3.87 9.89 22.38 0.22 -3.65 16 24 C -0.08 -1.97 9.82 22.37 0.22 -1.75 16 25 H 0.06 1.38 7.71 -2.39 -0.02 1.36 16 26 H 0.09 1.70 6.02 -2.38 -0.01 1.68 16 27 H 0.09 1.56 8.05 -2.39 -0.02 1.55 16 28 H 0.36 10.50 7.55 -89.69 -0.68 9.82 16 29 H 0.34 11.57 8.58 -89.69 -0.77 10.80 16 30 H 0.06 2.40 7.24 -2.39 -0.02 2.38 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.03 1.05 5.92 -2.39 -0.01 1.04 16 33 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 34 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.11 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.41 2.96 8.84 -92.71 -0.82 2.14 16 38 H 0.41 2.91 8.84 -92.70 -0.82 2.09 16 39 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -74.35 331.16 0.38 -73.96 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -2.05 Total: 34.23 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.22 Total: -14.57 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -3.62 Total: -114.85 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.26 kcal Total: -74.35 0.38 -73.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349612855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.897 kcal (2) G-P(sol) polarization free energy of solvation -74.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds