Wall clock time and date at job start Mon Mar 30 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34769 * 120.00028 * 2 1 4 4 O 1.21272 * 120.00386 * 185.08451 * 3 2 1 5 5 C 1.50704 * 120.00156 * 5.08667 * 3 2 1 6 6 C 1.52998 * 109.47548 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47337 * 180.02562 * 6 5 3 8 8 C 1.50696 * 109.47219 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99824 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00013 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99616 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00024 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.46986 * 90.00158 * 12 10 8 14 14 H 1.48502 * 109.47150 * 209.99846 * 12 10 8 15 15 H 1.48496 * 109.47299 * 330.00031 * 12 10 8 16 16 C 1.39410 * 119.99741 * 180.02562 * 2 1 3 17 17 C 1.39027 * 119.69461 * 265.02999 * 16 2 1 18 18 C 1.38360 * 119.10186 * 180.23451 * 17 16 2 19 19 C 1.50699 * 120.75501 * 179.74753 * 18 17 16 20 20 N 1.46899 * 109.47215 * 90.00031 * 19 18 17 21 21 C 1.38842 * 118.49102 * 359.50367 * 18 17 16 22 22 C 1.38070 * 119.31295 * 0.50032 * 21 18 17 23 23 N 1.31941 * 120.84847 * 359.73899 * 22 21 18 24 24 H 1.09003 * 109.46991 * 269.99095 * 1 2 3 25 25 H 1.09000 * 109.47419 * 29.99419 * 1 2 3 26 26 H 1.09000 * 109.47651 * 149.99632 * 1 2 3 27 27 H 1.09001 * 109.47117 * 300.00029 * 5 3 2 28 28 H 1.09005 * 109.46897 * 59.99279 * 5 3 2 29 29 H 1.08999 * 109.46787 * 300.00439 * 6 5 3 30 30 H 1.09003 * 109.46753 * 59.99853 * 6 5 3 31 31 H 1.09001 * 109.47215 * 300.00393 * 7 6 5 32 32 H 1.09003 * 109.47327 * 60.00195 * 7 6 5 33 33 H 0.97002 * 119.99728 * 179.97438 * 11 10 8 34 34 H 1.08004 * 120.45273 * 359.95752 * 17 16 2 35 35 H 1.09005 * 109.47116 * 209.99809 * 19 18 17 36 36 H 1.09000 * 109.47322 * 329.99911 * 19 18 17 37 37 H 1.00898 * 111.00260 * 179.97438 * 20 19 18 38 38 H 1.00906 * 110.99728 * 303.95569 * 20 19 18 39 39 H 1.08000 * 120.34657 * 180.25982 * 21 18 17 40 40 H 1.07998 * 119.57859 * 179.77007 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3480 1.1693 -0.0931 5 6 1.3898 2.4697 0.1157 6 6 2.3831 3.6332 0.0916 7 6 1.6227 4.9555 0.2097 8 6 2.6010 6.1015 0.1853 9 1 3.6593 5.9062 0.0942 10 6 2.1449 7.3994 0.2782 11 7 2.9988 8.3994 0.2574 12 14 0.3145 7.7372 0.4351 13 1 -0.0625 7.7649 1.8712 14 1 -0.0017 9.0490 -0.1850 15 1 -0.4475 6.6664 -0.2562 16 6 2.1620 -1.2074 -0.0005 17 6 2.5969 -1.7520 1.2024 18 6 3.2918 -2.9484 1.1872 19 6 3.7854 -3.5692 2.4685 20 7 2.7536 -4.4650 3.0079 21 6 3.5196 -3.5665 -0.0350 22 6 3.0588 -2.9687 -1.1912 23 7 2.4031 -1.8246 -1.1462 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5139 27 1 0.6968 2.5658 -0.7201 28 1 0.8333 2.4868 1.0529 29 1 3.0758 3.5368 0.9276 30 1 2.9398 3.6162 -0.8454 31 1 0.9296 5.0521 -0.6261 32 1 1.0663 4.9723 1.1469 33 1 2.6780 9.3125 0.3224 34 1 2.3990 -1.2459 2.1357 35 1 4.6935 -4.1388 2.2701 36 1 4.0001 -2.7842 3.1936 37 1 3.0610 -4.8944 3.8677 38 1 1.8818 -3.9744 3.1397 39 1 4.0551 -4.5033 -0.0813 40 1 3.2368 -3.4439 -2.1445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350696314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:19 Heat of formation + Delta-G solvation = -0.767632 kcal Electronic energy + Delta-G solvation = -20701.114704 eV Core-core repulsion = 17515.755827 eV Total energy + Delta-G solvation = -3185.358878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98418 -39.32264 -36.13257 -35.30724 -34.36140 -32.15725 -31.87366 -30.85725 -28.39286 -26.95052 -25.94302 -24.52841 -23.22564 -21.93857 -20.18411 -19.27748 -17.45574 -17.17058 -16.82751 -16.50943 -16.22306 -16.09601 -15.47864 -14.98357 -14.80793 -14.20993 -13.86543 -13.69705 -13.39905 -13.36334 -12.94247 -12.74848 -12.62037 -12.48771 -12.07710 -11.95952 -11.65170 -10.96925 -10.78647 -10.10408 -10.01853 -9.95685 -9.85849 -9.69363 -9.54279 -9.27938 -9.21081 -9.12913 -8.92027 -8.50588 -6.00171 -3.98016 0.81096 0.95338 2.63198 2.74150 3.31731 3.39002 3.41859 3.44325 4.13450 4.31036 4.34853 4.47483 4.56374 4.79712 4.85150 4.86146 4.97764 5.12954 5.16969 5.21953 5.33073 5.44077 5.46695 5.51009 5.57509 5.69272 5.93406 6.04582 6.12652 6.51437 6.54704 6.65150 6.74362 6.87598 6.91582 7.18455 7.37780 7.45316 7.74671 7.82850 8.24984 8.59774 9.06638 9.61703 11.13586 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030966 B = 0.003093 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.004545 B = 9050.325307 C = 9128.116107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.581 5.581 3 C 0.522 3.478 4 O -0.519 6.519 5 C -0.135 4.135 6 C -0.089 4.089 7 C -0.013 4.013 8 C -0.519 4.519 9 H 0.072 0.928 10 C 0.064 3.936 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.265 1.265 16 C 0.358 3.642 17 C -0.150 4.150 18 C -0.036 4.036 19 C 0.100 3.900 20 N -0.845 5.845 21 C -0.154 4.154 22 C 0.113 3.887 23 N -0.484 5.484 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.016 0.984 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.347 0.653 38 H 0.343 0.657 39 H 0.139 0.861 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -27.552 3.838 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.316 5.316 3 C 0.312 3.688 4 O -0.392 6.392 5 C -0.175 4.175 6 C -0.127 4.127 7 C -0.051 4.051 8 C -0.557 4.557 9 H 0.091 0.909 10 C -0.137 4.137 11 N -0.544 5.544 12 Si 0.709 3.291 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.190 1.190 16 C 0.132 3.868 17 C -0.172 4.172 18 C -0.045 4.045 19 C -0.030 4.030 20 N -0.375 5.375 21 C -0.174 4.174 22 C -0.045 4.045 23 N -0.195 5.195 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.151 0.849 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.054 -27.340 2.349 27.902 hybrid contribution -0.722 0.578 1.597 1.845 sum -5.776 -26.762 3.945 27.661 Atomic orbital electron populations 1.21862 0.77634 1.03952 1.02219 1.45435 1.07211 1.03066 1.75839 1.21396 0.88244 0.84726 0.74429 1.90715 1.14569 1.86816 1.47079 1.21916 1.00443 0.91328 1.03824 1.21304 0.96612 0.92127 1.02627 1.19598 0.96380 0.93013 0.96090 1.21160 0.94969 0.89542 1.50028 0.90946 1.25056 0.97646 0.96227 0.94735 1.69927 1.34229 0.99042 1.51181 0.86754 0.86240 0.77628 0.78492 1.20354 1.21448 1.18991 1.18061 0.93116 0.87373 0.88204 1.21962 0.99899 0.96392 0.98987 1.20077 0.95378 0.93384 0.95662 1.20718 0.95208 0.94879 0.92244 1.58696 1.06235 1.36678 1.35909 1.22041 1.01506 1.01228 0.92636 1.22595 0.93095 0.90250 0.98592 1.67325 1.13370 1.09169 1.29628 0.92009 0.89792 0.91061 0.88938 0.88975 0.92070 0.91983 0.96583 0.97046 0.92788 0.84949 0.89407 0.93820 0.83992 0.84408 0.84362 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.19 59.85 0.61 1.41 16 2 N -0.58 -7.99 2.97 -122.77 -0.36 -8.36 16 3 C 0.52 8.84 7.63 -10.99 -0.08 8.75 16 4 O -0.52 -11.01 15.96 5.56 0.09 -10.92 16 5 C -0.14 -2.15 4.37 -27.88 -0.12 -2.27 16 6 C -0.09 -1.86 4.44 -26.73 -0.12 -1.98 16 7 C -0.01 -0.32 4.04 -27.89 -0.11 -0.44 16 8 C -0.52 -15.23 9.66 -34.44 -0.33 -15.57 16 9 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 10 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 11 N -0.90 -28.50 13.96 55.43 0.77 -27.72 16 12 Si 0.88 21.74 27.47 -169.99 -4.67 17.08 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 16 C 0.36 5.00 5.44 -154.70 -0.84 4.16 16 17 C -0.15 -1.75 9.72 -39.24 -0.38 -2.13 16 18 C -0.04 -0.35 5.43 -104.35 -0.57 -0.92 16 19 C 0.10 0.71 6.96 -4.98 -0.03 0.68 16 20 N -0.84 -5.12 9.61 -11.41 -0.11 -5.23 16 21 C -0.15 -1.42 9.81 -39.42 -0.39 -1.81 16 22 C 0.11 1.21 11.17 -17.57 -0.20 1.01 16 23 N -0.48 -6.84 10.39 -12.37 -0.13 -6.97 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.71 6.48 -51.93 -0.34 0.37 16 26 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 27 H 0.09 1.29 7.25 -51.93 -0.38 0.92 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 30 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 31 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 32 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.04 0.30 8.10 -51.93 -0.42 -0.12 16 37 H 0.35 1.42 9.08 -39.29 -0.36 1.07 16 38 H 0.34 1.95 8.99 -39.29 -0.35 1.60 16 39 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -36.81 339.23 -7.95 -44.76 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.99 Total: -0.46 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.67 Total: -7.29 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.17 Total: -48.28 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.81 -7.95 -44.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350696314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.997 kcal (2) G-P(sol) polarization free energy of solvation -36.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds