Wall clock time and date at job start Mon Mar 30 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34769 * 120.00028 * 2 1 4 4 O 1.21272 * 120.00386 * 185.08451 * 3 2 1 5 5 C 1.50704 * 120.00156 * 5.08667 * 3 2 1 6 6 C 1.52998 * 109.47548 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47337 * 180.02562 * 6 5 3 8 8 C 1.50696 * 109.47219 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99824 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00013 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99616 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00024 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.46986 * 90.00158 * 12 10 8 14 14 H 1.48502 * 109.47150 * 209.99846 * 12 10 8 15 15 H 1.48496 * 109.47299 * 330.00031 * 12 10 8 16 16 C 1.39410 * 119.99741 * 180.02562 * 2 1 3 17 17 C 1.39027 * 119.69461 * 265.02999 * 16 2 1 18 18 C 1.38360 * 119.10186 * 180.23451 * 17 16 2 19 19 C 1.50699 * 120.75501 * 179.74753 * 18 17 16 20 20 N 1.46899 * 109.47215 * 90.00031 * 19 18 17 21 21 C 1.38842 * 118.49102 * 359.50367 * 18 17 16 22 22 C 1.38070 * 119.31295 * 0.50032 * 21 18 17 23 23 N 1.31941 * 120.84847 * 359.73899 * 22 21 18 24 24 H 1.09003 * 109.46991 * 269.99095 * 1 2 3 25 25 H 1.09000 * 109.47419 * 29.99419 * 1 2 3 26 26 H 1.09000 * 109.47651 * 149.99632 * 1 2 3 27 27 H 1.09001 * 109.47117 * 300.00029 * 5 3 2 28 28 H 1.09005 * 109.46897 * 59.99279 * 5 3 2 29 29 H 1.08999 * 109.46787 * 300.00439 * 6 5 3 30 30 H 1.09003 * 109.46753 * 59.99853 * 6 5 3 31 31 H 1.09001 * 109.47215 * 300.00393 * 7 6 5 32 32 H 1.09003 * 109.47327 * 60.00195 * 7 6 5 33 33 H 0.97002 * 119.99728 * 179.97438 * 11 10 8 34 34 H 1.08004 * 120.45273 * 359.95752 * 17 16 2 35 35 H 1.09005 * 109.47116 * 209.99809 * 19 18 17 36 36 H 1.09000 * 109.47322 * 329.99911 * 19 18 17 37 37 H 1.00898 * 111.00260 * 179.97438 * 20 19 18 38 38 H 1.00906 * 110.99728 * 303.95569 * 20 19 18 39 39 H 1.08000 * 120.34657 * 180.25982 * 21 18 17 40 40 H 1.07998 * 119.57859 * 179.77007 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3480 1.1693 -0.0931 5 6 1.3898 2.4697 0.1157 6 6 2.3831 3.6332 0.0916 7 6 1.6227 4.9555 0.2097 8 6 2.6010 6.1015 0.1853 9 1 3.6593 5.9062 0.0942 10 6 2.1449 7.3994 0.2782 11 7 2.9988 8.3994 0.2574 12 14 0.3145 7.7372 0.4351 13 1 -0.0625 7.7649 1.8712 14 1 -0.0017 9.0490 -0.1850 15 1 -0.4475 6.6664 -0.2562 16 6 2.1620 -1.2074 -0.0005 17 6 2.5969 -1.7520 1.2024 18 6 3.2918 -2.9484 1.1872 19 6 3.7854 -3.5692 2.4685 20 7 2.7536 -4.4650 3.0079 21 6 3.5196 -3.5665 -0.0350 22 6 3.0588 -2.9687 -1.1912 23 7 2.4031 -1.8246 -1.1462 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5139 27 1 0.6968 2.5658 -0.7201 28 1 0.8333 2.4868 1.0529 29 1 3.0758 3.5368 0.9276 30 1 2.9398 3.6162 -0.8454 31 1 0.9296 5.0521 -0.6261 32 1 1.0663 4.9723 1.1469 33 1 2.6780 9.3125 0.3224 34 1 2.3990 -1.2459 2.1357 35 1 4.6935 -4.1388 2.2701 36 1 4.0001 -2.7842 3.1936 37 1 3.0610 -4.8944 3.8677 38 1 1.8818 -3.9744 3.1397 39 1 4.0551 -4.5033 -0.0813 40 1 3.2368 -3.4439 -2.1445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350696314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:18 Heat of formation + Delta-G solvation = -28.225829 kcal Electronic energy + Delta-G solvation = -20702.305381 eV Core-core repulsion = 17515.755827 eV Total energy + Delta-G solvation = -3186.549554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94708 -40.42550 -37.06721 -36.17900 -36.12487 -34.17200 -32.57169 -31.87030 -30.06969 -27.79698 -26.66456 -26.05366 -24.31466 -23.02591 -21.82533 -20.42411 -18.86948 -18.44722 -18.07176 -17.75565 -17.07865 -16.80913 -16.56924 -16.26639 -15.64099 -15.58118 -15.17170 -14.85595 -14.66970 -14.43950 -14.03418 -14.01670 -13.84271 -13.43093 -13.24163 -13.11761 -12.79927 -12.68284 -12.48574 -11.80375 -11.73908 -11.51007 -11.32704 -11.12084 -10.83538 -10.78403 -10.74440 -10.12257 -9.91203 -9.71037 -8.27294 -6.33261 -0.03351 0.15416 1.39505 1.43501 1.43662 1.55639 1.70454 2.40114 2.62730 3.07932 3.49127 3.50935 3.67240 3.77698 3.90398 4.04157 4.08951 4.10354 4.18046 4.30556 4.51063 4.55628 4.59560 4.67748 4.72106 4.84503 4.88822 4.91589 4.94684 5.02508 5.19946 5.33707 5.53319 5.59032 5.67460 5.80412 6.06690 6.11797 6.31174 6.50538 6.75480 6.85779 7.07026 7.31111 8.90569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030966 B = 0.003093 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.004545 B = 9050.325307 C = 9128.116107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.573 5.573 3 C 0.519 3.481 4 O -0.578 6.578 5 C -0.123 4.123 6 C -0.081 4.081 7 C -0.007 4.007 8 C -0.541 4.541 9 H 0.017 0.983 10 C -0.004 4.004 11 N -0.958 5.958 12 Si 0.963 3.037 13 H -0.262 1.262 14 H -0.287 1.287 15 H -0.233 1.233 16 C 0.326 3.674 17 C -0.159 4.159 18 C -0.037 4.037 19 C 0.104 3.896 20 N -0.847 5.847 21 C -0.147 4.147 22 C 0.102 3.898 23 N -0.519 5.519 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.044 0.956 37 H 0.359 0.641 38 H 0.345 0.655 39 H 0.169 0.831 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -29.702 4.591 31.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.305 5.305 3 C 0.310 3.690 4 O -0.456 6.456 5 C -0.162 4.162 6 C -0.119 4.119 7 C -0.045 4.045 8 C -0.579 4.579 9 H 0.036 0.964 10 C -0.200 4.200 11 N -0.599 5.599 12 Si 0.785 3.215 13 H -0.187 1.187 14 H -0.214 1.214 15 H -0.156 1.156 16 C 0.101 3.899 17 C -0.182 4.182 18 C -0.046 4.046 19 C -0.027 4.027 20 N -0.379 5.379 21 C -0.167 4.167 22 C -0.056 4.056 23 N -0.231 5.231 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.139 0.861 28 H 0.145 0.855 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.118 0.882 36 H 0.062 0.938 37 H 0.174 0.826 38 H 0.158 0.842 39 H 0.187 0.813 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.189 -29.551 3.114 30.822 hybrid contribution 0.379 1.147 1.350 1.812 sum -7.809 -28.404 4.464 29.794 Atomic orbital electron populations 1.22194 0.75001 1.04970 1.04254 1.45425 1.08806 1.02295 1.74013 1.21532 0.87577 0.85972 0.73883 1.90690 1.16974 1.87716 1.50207 1.21776 0.99105 0.88471 1.06834 1.21066 0.97161 0.93525 1.00180 1.19530 0.95503 0.91883 0.97538 1.21558 0.93823 0.92202 1.50329 0.96443 1.26226 1.04329 0.95558 0.93891 1.70115 1.37444 0.99789 1.52567 0.85475 0.78287 0.78212 0.79528 1.18728 1.21352 1.15627 1.18340 0.94698 0.87809 0.89067 1.22070 1.00303 0.97294 0.98490 1.20439 0.94324 0.92706 0.97134 1.20712 0.95758 0.95160 0.91045 1.58685 1.06098 1.36329 1.36761 1.22395 1.00493 1.01906 0.91871 1.23125 0.92484 0.89568 1.00413 1.67278 1.14951 1.10773 1.30131 0.89412 0.88451 0.90419 0.86112 0.85505 0.94412 0.94877 0.94975 0.94824 0.92501 0.84442 0.88168 0.93754 0.82641 0.84197 0.81347 0.79787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.19 127.77 1.30 2.52 16 2 N -0.57 -15.14 2.97 -660.72 -1.96 -17.10 16 3 C 0.52 17.42 7.63 87.66 0.67 18.09 16 4 O -0.58 -25.51 15.96 -3.00 -0.05 -25.56 16 5 C -0.12 -3.63 4.37 29.85 0.13 -3.50 16 6 C -0.08 -3.45 4.44 30.59 0.14 -3.31 16 7 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 8 C -0.54 -32.76 9.66 25.60 0.25 -32.52 16 9 H 0.02 1.19 7.99 -2.91 -0.02 1.16 16 10 C 0.00 -0.26 5.47 84.65 0.46 0.20 16 11 N -0.96 -62.29 13.96 21.45 0.30 -61.99 16 12 Si 0.96 43.76 27.47 68.60 1.88 45.65 16 13 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 14 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.23 -9.37 6.54 99.48 0.65 -8.72 16 16 C 0.33 8.96 5.44 132.91 0.72 9.68 16 17 C -0.16 -3.61 9.72 22.49 0.22 -3.39 16 18 C -0.04 -0.67 5.43 -19.69 -0.11 -0.77 16 19 C 0.10 1.26 6.96 85.56 0.60 1.86 16 20 N -0.85 -8.37 9.61 -190.00 -1.83 -10.20 16 21 C -0.15 -2.43 9.81 22.37 0.22 -2.21 16 22 C 0.10 2.07 11.17 84.64 0.95 3.01 16 23 N -0.52 -14.53 10.39 -193.04 -2.01 -16.53 16 24 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 1.29 6.48 -2.39 -0.02 1.28 16 26 H 0.08 1.16 8.05 -2.39 -0.02 1.14 16 27 H 0.12 2.93 7.25 -2.39 -0.02 2.91 16 28 H 0.13 2.91 8.14 -2.38 -0.02 2.89 16 29 H 0.04 1.73 8.10 -2.39 -0.02 1.72 16 30 H 0.03 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 32 H 0.03 1.43 7.57 -2.39 -0.02 1.42 16 33 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 34 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.10 0.99 8.10 -2.38 -0.02 0.97 16 36 H 0.04 0.54 8.10 -2.39 -0.02 0.52 16 37 H 0.36 2.12 9.08 -89.70 -0.81 1.31 16 38 H 0.35 3.26 8.99 -89.69 -0.81 2.45 16 39 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -85.32 339.23 1.38 -83.94 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -0.62 Total: 12.33 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 5.66 Total: -10.55 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -5.50 Total: -105.82 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.65 kcal Total: -85.32 1.38 -83.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350696314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.718 kcal (2) G-P(sol) polarization free energy of solvation -85.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds