Wall clock time and date at job start Mon Mar 30 2020 01:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 N 1.31787 * 119.12371 * 269.73191 * 4 3 2 6 6 C 1.32334 * 120.81976 * 179.75840 * 5 4 3 7 7 C 1.38602 * 119.10116 * 0.50517 * 6 5 4 8 8 C 1.38595 * 118.39889 * 359.75160 * 7 6 5 9 9 N 1.31797 * 119.12026 * 89.99807 * 4 3 2 10 10 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 11 11 O 1.21274 * 119.99897 * 179.73022 * 10 2 1 12 12 C 1.50695 * 119.99635 * 0.02562 * 10 2 1 13 13 C 1.53002 * 109.47004 * 179.97438 * 12 10 2 14 14 C 1.52997 * 109.47542 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47469 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47257 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00042 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00041 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00267 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47032 * 59.99817 * 20 18 16 22 22 H 1.48495 * 109.47422 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46915 * 300.00277 * 20 18 16 24 24 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 25 25 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 26 26 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 27 27 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 28 28 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 29 29 H 1.07999 * 120.45297 * 180.23242 * 6 5 4 30 30 H 1.08000 * 120.80308 * 179.77210 * 7 6 5 31 31 H 1.08003 * 120.45177 * 180.02562 * 8 7 6 32 32 H 1.09005 * 109.47403 * 300.00056 * 12 10 2 33 33 H 1.09002 * 109.47422 * 60.00295 * 12 10 2 34 34 H 1.08997 * 109.47244 * 300.00535 * 13 12 10 35 35 H 1.09002 * 109.46787 * 59.99910 * 13 12 10 36 36 H 1.08997 * 109.47365 * 300.00556 * 14 13 12 37 37 H 1.09004 * 109.46747 * 59.99765 * 14 13 12 38 38 H 1.09005 * 109.47124 * 300.00323 * 15 14 13 39 39 H 1.09004 * 109.47330 * 60.00120 * 15 14 13 40 40 H 0.97000 * 120.00297 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 7 3.5553 1.3176 -2.0236 6 6 3.8076 1.6760 -3.2723 7 6 2.8950 2.4762 -3.9415 8 6 1.7455 2.8663 -3.2726 9 7 1.5586 2.4645 -2.0256 10 6 2.1389 -1.1673 0.0005 11 8 3.3516 -1.1673 -0.0044 12 6 1.3853 -2.4723 0.0005 13 6 2.3795 -3.6353 0.0005 14 6 1.6145 -4.9603 0.0012 15 6 2.6086 -6.1232 0.0018 16 6 1.8551 -7.4283 0.0018 17 1 0.7751 -7.4282 0.0018 18 6 2.5444 -8.6223 0.0029 19 7 3.8596 -8.6224 0.0034 20 14 1.6105 -10.2401 0.0022 21 1 0.7581 -10.3190 -1.2113 22 1 2.5754 -11.3688 0.0029 23 1 0.7552 -10.3184 1.2137 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 4.7145 1.3531 -3.7618 30 1 3.0750 2.7880 -4.9597 31 1 1.0119 3.4894 -3.7625 32 1 0.7582 -2.5298 0.8903 33 1 0.7590 -2.5302 -0.8897 34 1 3.0062 -3.5775 -0.8894 35 1 3.0061 -3.5775 0.8905 36 1 0.9881 -5.0178 0.8913 37 1 0.9875 -5.0182 -0.8886 38 1 3.2354 -6.0659 -0.8882 39 1 3.2353 -6.0651 0.8918 40 1 4.3446 -9.4624 0.0038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352606658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:14 Heat of formation + Delta-G solvation = -1.314186 kcal Electronic energy + Delta-G solvation = -20549.527587 eV Core-core repulsion = 17364.145009 eV Total energy + Delta-G solvation = -3185.382578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33677 -39.70451 -35.86674 -34.83785 -33.96792 -32.95028 -32.42902 -29.92546 -28.28947 -26.57937 -25.27477 -24.79539 -23.24109 -21.91941 -19.97822 -19.11504 -17.81559 -17.43561 -16.70443 -16.32302 -16.11442 -15.97692 -15.41458 -14.77267 -14.43383 -14.40261 -13.87713 -13.40393 -13.37268 -13.03815 -12.66583 -12.60184 -12.17258 -12.08002 -11.59093 -11.50966 -11.22570 -11.09134 -10.93718 -10.50835 -10.47424 -10.35548 -10.05188 -9.62291 -9.56639 -9.47788 -9.17538 -8.95258 -8.88114 -8.27312 -5.92168 -3.94724 0.52673 0.81320 2.71933 2.87211 3.37189 3.41416 3.43742 3.60166 3.67939 3.85915 4.28913 4.50992 4.64820 4.67265 4.78256 4.96582 4.99392 5.10406 5.25650 5.37001 5.38853 5.42855 5.47668 5.54301 5.56248 5.90895 6.06170 6.18810 6.27156 6.37475 6.59852 6.70583 6.88917 7.06301 7.22886 7.30814 7.77322 7.83503 7.94156 8.09571 8.27596 8.51236 9.12873 9.68645 11.19162 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029901 B = 0.002806 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.201335 B = 9975.431771 C =10304.729578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.184 3.816 4 C 0.300 3.700 5 N -0.490 5.490 6 C 0.148 3.852 7 C -0.230 4.230 8 C 0.143 3.857 9 N -0.513 5.513 10 C 0.510 3.490 11 O -0.513 6.513 12 C -0.135 4.135 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 26.444 -5.266 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.356 5.356 3 C 0.059 3.941 4 C 0.031 3.969 5 N -0.203 5.203 6 C -0.019 4.019 7 C -0.252 4.252 8 C -0.023 4.023 9 N -0.228 5.228 10 C 0.298 3.702 11 O -0.386 6.386 12 C -0.175 4.175 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.186 0.814 30 H 0.165 0.835 31 H 0.185 0.815 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.110 26.011 -4.305 27.063 hybrid contribution -0.421 -0.553 -1.205 1.391 sum -6.531 25.458 -5.509 26.853 Atomic orbital electron populations 1.21854 0.78968 1.03585 1.02107 1.47921 1.07133 1.05045 1.75546 1.20030 0.99859 0.86185 0.88020 1.23767 0.85681 0.89422 0.98045 1.68419 1.20675 1.20864 1.10365 1.23382 0.98296 0.90311 0.89865 1.22963 0.97322 1.01801 1.03137 1.23223 0.95176 0.94063 0.89864 1.68258 1.31501 1.12329 1.10687 1.21203 0.88443 0.85310 0.75197 1.90738 1.13814 1.86952 1.47114 1.21816 1.00055 0.91928 1.03689 1.21462 0.97022 0.92678 1.02960 1.21642 0.99061 0.94030 0.99992 1.19087 0.94050 0.91226 0.97306 1.21254 0.92939 0.91237 1.50473 0.92824 1.25040 0.94836 0.99196 0.95483 1.69965 1.06046 1.26597 1.50884 0.86675 0.79577 0.83285 0.78535 1.20312 1.21322 1.20276 0.92181 0.90733 0.90752 0.88052 0.87236 0.81403 0.83489 0.81521 0.89090 0.89450 0.91900 0.91721 0.93466 0.93604 0.96636 0.96561 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.24 59.85 0.61 1.25 16 2 N -0.62 -7.31 2.86 -182.96 -0.52 -7.83 16 3 C 0.18 2.05 5.84 -5.19 -0.03 2.02 16 4 C 0.30 3.62 7.22 -157.20 -1.14 2.48 16 5 N -0.49 -6.48 10.33 -10.72 -0.11 -6.59 16 6 C 0.15 1.44 11.31 -17.20 -0.19 1.24 16 7 C -0.23 -1.65 10.17 -39.32 -0.40 -2.05 16 8 C 0.14 1.11 11.30 -17.20 -0.19 0.92 16 9 N -0.51 -5.35 10.33 -10.73 -0.11 -5.46 16 10 C 0.51 7.74 7.67 -10.98 -0.08 7.65 16 11 O -0.51 -9.79 15.56 5.56 0.09 -9.70 16 12 C -0.14 -1.94 4.25 -27.88 -0.12 -2.05 16 13 C -0.10 -1.93 4.50 -26.73 -0.12 -2.05 16 14 C -0.11 -2.32 5.15 -26.74 -0.14 -2.46 16 15 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 16 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.88 13.29 55.43 0.74 -27.14 16 20 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 26 H 0.07 0.59 6.44 -51.93 -0.33 0.25 16 27 H 0.10 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.11 1.36 7.43 -51.92 -0.39 0.98 16 29 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 31 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 33 H 0.09 1.12 7.40 -51.93 -0.38 0.74 16 34 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -36.54 343.09 -8.25 -44.79 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -6.13 Total: -3.70 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.35 Total: -6.65 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.01 Total: -47.03 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.54 -8.25 -44.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352606658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.479 kcal (2) G-P(sol) polarization free energy of solvation -36.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds