Wall clock time and date at job start Mon Mar 30 2020 02:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00083 * 2 1 4 4 C 1.50703 * 119.99976 * 179.97438 * 2 1 3 5 5 N 1.46500 * 109.47129 * 94.83394 * 4 2 1 6 6 N 1.40585 * 127.38214 * 86.10594 * 5 4 2 7 7 N 1.28908 * 106.81600 * 180.26277 * 6 5 4 8 8 N 1.28430 * 110.31512 * 359.77544 * 7 6 5 9 9 C 1.31475 * 110.51000 * 359.97438 * 8 7 6 10 10 N 1.38369 * 126.44056 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00163 * 106.77015 * 10 9 8 12 12 C 1.50692 * 109.47145 * 302.58051 * 11 10 9 13 13 H 1.07998 * 120.00553 * 4.61598 * 12 11 10 14 14 C 1.37882 * 120.00220 * 184.61322 * 12 11 10 15 15 N 1.31514 * 120.00450 * 184.94425 * 14 12 11 16 16 Si 1.86807 * 119.99607 * 4.94771 * 14 12 11 17 17 H 1.48497 * 109.47345 * 94.46259 * 16 14 12 18 18 H 1.48504 * 109.46734 * 214.46391 * 16 14 12 19 19 H 1.48503 * 109.47122 * 334.45876 * 16 14 12 20 20 C 1.46902 * 110.99952 * 342.81765 * 10 9 8 21 21 C 1.53004 * 109.46983 * 194.66872 * 20 10 9 22 22 C 1.53005 * 117.49846 * 243.74608 * 21 20 10 23 23 C 1.53006 * 117.49354 * 175.09014 * 21 20 10 24 24 H 1.08005 * 120.00142 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00066 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 275.05781 * 3 2 1 27 27 H 1.08998 * 109.47470 * 35.05399 * 3 2 1 28 28 H 1.08999 * 109.46932 * 155.05555 * 3 2 1 29 29 H 1.09000 * 109.46695 * 334.83325 * 4 2 1 30 30 H 1.09004 * 109.47193 * 214.83675 * 4 2 1 31 31 H 1.09002 * 109.46774 * 62.58207 * 11 10 9 32 32 H 1.09003 * 109.46958 * 182.57670 * 11 10 9 33 33 H 0.96995 * 120.00358 * 180.02562 * 15 14 12 34 34 H 1.08991 * 109.47309 * 314.67072 * 20 10 9 35 35 H 1.09002 * 109.46831 * 74.67076 * 20 10 9 36 36 H 1.08997 * 115.55100 * 29.42048 * 21 20 10 37 37 H 1.09000 * 117.49682 * 0.02562 * 22 21 20 38 38 H 1.08997 * 117.49210 * 145.02166 * 22 21 20 39 39 H 1.09001 * 117.49470 * 214.98011 * 23 21 20 40 40 H 1.08994 * 117.50066 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4084 -1.6705 -1.3756 6 7 3.5373 -1.2650 -2.1089 7 7 3.4425 -1.8121 -3.2722 8 7 2.3750 -2.5225 -3.3452 9 6 1.7101 -2.4726 -2.2122 10 7 0.5169 -3.1142 -1.9304 11 6 0.7310 -4.2491 -1.0226 12 6 1.7194 -5.2055 -1.6384 13 1 2.2022 -4.9564 -2.5718 14 6 2.0074 -6.3986 -1.0102 15 7 2.9401 -7.1888 -1.4952 16 14 1.0726 -6.8928 0.5298 17 1 -0.0728 -7.7609 0.1564 18 1 1.9793 -7.6347 1.4424 19 1 0.5685 -5.6754 1.2148 20 6 -0.1526 -3.5463 -3.1645 21 6 -1.6057 -3.9121 -2.8551 22 6 -2.0292 -5.3665 -3.0702 23 6 -2.5083 -4.2789 -4.0349 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.1667 1.6650 -1.0237 27 1 1.5166 2.0404 0.5902 28 1 3.0521 1.1538 0.4334 29 1 1.4396 -2.0846 0.4380 30 1 2.9757 -1.1978 0.5876 31 1 1.1212 -3.8853 -0.0720 32 1 -0.2154 -4.7630 -0.8540 33 1 3.1425 -8.0283 -1.0536 34 1 -0.1292 -2.7362 -3.8934 35 1 0.3623 -4.4164 -3.5717 36 1 -2.0591 -3.3736 -2.0229 37 1 -1.2725 -6.0628 -3.4316 38 1 -2.7615 -5.7847 -2.3795 39 1 -3.5556 -3.9820 -3.9786 40 1 -2.0669 -4.2600 -5.0312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354291284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:08 Heat of formation + Delta-G solvation = 171.977810 kcal Electronic energy + Delta-G solvation = -22423.090910 eV Core-core repulsion = 19277.515588 eV Total energy + Delta-G solvation = -3145.575322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.24124 -38.19926 -36.76591 -35.80632 -33.08176 -32.65569 -30.59956 -28.34468 -27.57976 -27.09029 -25.69326 -23.05842 -22.21938 -21.94373 -20.87123 -19.59178 -18.83999 -17.30606 -16.70781 -16.18853 -15.90177 -15.34221 -14.72808 -14.55327 -14.22970 -13.94134 -13.58215 -13.24941 -12.83742 -12.74099 -12.48947 -12.11884 -11.96766 -11.75439 -11.62614 -11.45240 -11.28738 -11.17635 -10.90208 -10.70143 -10.55994 -10.22492 -10.04182 -9.93409 -9.67610 -9.53342 -9.49262 -9.27305 -8.76634 -8.00467 -6.27220 -4.31463 1.69033 1.82998 2.69608 3.06905 3.12769 3.18123 3.21543 4.03915 4.20123 4.31512 4.61141 4.65303 5.00636 5.06297 5.14684 5.24505 5.27046 5.39342 5.46288 5.49901 5.60761 5.74158 5.81609 5.88207 5.90401 5.92163 6.05794 6.15273 6.25340 6.30763 6.43258 6.46128 6.50650 6.58977 6.65922 6.70347 6.73397 7.11353 7.39006 7.63708 8.20421 8.80303 9.24785 9.30221 10.84826 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.007559 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.043110 B = 3703.380611 C = 4331.823084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.155 4.155 3 C -0.113 4.113 4 C 0.165 3.835 5 N -0.379 5.379 6 N -0.107 5.107 7 N -0.040 5.040 8 N -0.360 5.360 9 C 0.468 3.532 10 N -0.458 5.458 11 C 0.162 3.838 12 C -0.568 4.568 13 H 0.089 0.911 14 C 0.083 3.917 15 N -0.882 5.882 16 Si 0.871 3.129 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.101 3.899 21 C -0.140 4.140 22 C -0.175 4.175 23 C -0.181 4.181 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.349 10.869 3.923 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C -0.170 4.170 4 C 0.043 3.957 5 N -0.177 5.177 6 N -0.094 5.094 7 N -0.036 5.036 8 N -0.218 5.218 9 C 0.102 3.898 10 N -0.182 5.182 11 C 0.037 3.963 12 C -0.606 4.606 13 H 0.107 0.893 14 C -0.122 4.122 15 N -0.518 5.518 16 Si 0.697 3.303 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.026 4.026 21 C -0.159 4.159 22 C -0.212 4.212 23 C -0.218 4.218 24 H 0.120 0.880 25 H 0.127 0.873 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.478 11.332 3.378 14.549 hybrid contribution -0.587 -1.159 1.375 1.892 sum -9.065 10.173 4.753 14.431 Atomic orbital electron populations 1.23943 0.95083 1.02681 0.97441 1.21842 0.95639 0.95196 1.02924 1.20791 1.00058 0.93916 1.02185 1.20889 1.01165 0.95612 0.78019 1.51196 1.17812 1.34973 1.13737 1.82356 1.03909 1.22702 1.00411 1.77748 1.11077 1.03884 1.10935 1.74911 1.03460 1.21652 1.21807 1.23025 0.90181 0.90402 0.86187 1.59341 1.12507 1.28984 1.17360 1.20468 0.98511 0.86446 0.90888 1.21650 1.24870 1.03156 1.10901 0.89294 1.24890 0.94369 0.96064 0.96898 1.69922 1.29878 1.11744 1.40248 0.86932 0.80382 0.79427 0.83512 1.19710 1.20965 1.18889 1.21592 0.91068 1.01360 0.88591 1.22141 0.94932 0.98610 1.00201 1.23072 1.03530 0.92212 1.02407 1.22937 0.99034 1.04575 0.95287 0.88030 0.87282 0.91594 0.91773 0.91629 0.87190 0.88003 0.95421 0.92937 0.92318 0.90878 0.90317 0.87610 0.88009 0.89363 0.89234 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 13.91 29.02 0.40 -1.32 16 2 C -0.15 -1.91 5.63 -101.07 -0.57 -2.48 16 3 C -0.11 -1.21 10.02 36.00 0.36 -0.85 16 4 C 0.17 2.43 6.63 -5.19 -0.03 2.40 16 5 N -0.38 -7.22 3.67 -63.04 -0.23 -7.45 16 6 N -0.11 -2.22 13.93 60.35 0.84 -1.38 16 7 N -0.04 -0.91 13.38 60.35 0.81 -0.11 16 8 N -0.36 -8.28 10.83 30.09 0.33 -7.96 16 9 C 0.47 9.75 5.76 -320.42 -1.85 7.90 16 10 N -0.46 -8.77 4.68 -176.23 -0.82 -9.59 16 11 C 0.16 3.45 3.86 -4.98 -0.02 3.43 16 12 C -0.57 -14.90 8.09 -34.44 -0.28 -15.18 16 13 H 0.09 2.67 6.66 -52.49 -0.35 2.32 16 14 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 15 N -0.88 -26.00 13.96 55.43 0.77 -25.23 16 16 Si 0.87 19.71 27.42 -169.99 -4.66 15.05 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.26 -5.55 6.65 56.52 0.38 -5.17 16 20 C 0.10 1.83 4.58 -3.82 -0.02 1.81 16 21 C -0.14 -2.11 4.96 -90.61 -0.45 -2.56 16 22 C -0.18 -2.59 10.18 -26.69 -0.27 -2.86 16 23 C -0.18 -2.32 10.25 -26.69 -0.27 -2.59 16 24 H 0.10 0.95 8.05 -52.48 -0.42 0.53 16 25 H 0.11 1.28 7.99 -52.48 -0.42 0.86 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.06 0.67 8.03 -51.93 -0.42 0.26 16 29 H 0.11 1.60 6.01 -51.93 -0.31 1.29 16 30 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.03 0.59 5.91 -51.93 -0.31 0.28 16 32 H 0.05 1.08 6.31 -51.93 -0.33 0.76 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.29 7.84 -51.93 -0.41 0.89 16 35 H 0.08 1.67 6.50 -51.93 -0.34 1.33 16 36 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.10 1.70 8.03 -51.93 -0.42 1.28 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -30.49 334.59 -6.85 -37.34 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.83 Total: 4.43 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -3.09 Total: -10.15 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 1.69 Total: -51.70 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.66 Total: 15.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.49 -6.85 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354291284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.313 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds