Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00083 * 2 1 4 4 C 1.50703 * 119.99976 * 179.97438 * 2 1 3 5 5 N 1.46500 * 109.47129 * 94.83394 * 4 2 1 6 6 N 1.40585 * 127.38214 * 86.10594 * 5 4 2 7 7 N 1.28908 * 106.81600 * 180.26277 * 6 5 4 8 8 N 1.28430 * 110.31512 * 359.77544 * 7 6 5 9 9 C 1.31475 * 110.51000 * 359.97438 * 8 7 6 10 10 N 1.38369 * 126.44056 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00163 * 106.77015 * 10 9 8 12 12 C 1.50692 * 109.47145 * 302.58051 * 11 10 9 13 13 H 1.07998 * 120.00553 * 4.61598 * 12 11 10 14 14 C 1.37882 * 120.00220 * 184.61322 * 12 11 10 15 15 N 1.31514 * 120.00450 * 184.94425 * 14 12 11 16 16 Si 1.86807 * 119.99607 * 4.94771 * 14 12 11 17 17 H 1.48497 * 109.47345 * 94.46259 * 16 14 12 18 18 H 1.48504 * 109.46734 * 214.46391 * 16 14 12 19 19 H 1.48503 * 109.47122 * 334.45876 * 16 14 12 20 20 C 1.46902 * 110.99952 * 342.81765 * 10 9 8 21 21 C 1.53004 * 109.46983 * 194.66872 * 20 10 9 22 22 C 1.53005 * 117.49846 * 243.74608 * 21 20 10 23 23 C 1.53006 * 117.49354 * 175.09014 * 21 20 10 24 24 H 1.08005 * 120.00142 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00066 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 275.05781 * 3 2 1 27 27 H 1.08998 * 109.47470 * 35.05399 * 3 2 1 28 28 H 1.08999 * 109.46932 * 155.05555 * 3 2 1 29 29 H 1.09000 * 109.46695 * 334.83325 * 4 2 1 30 30 H 1.09004 * 109.47193 * 214.83675 * 4 2 1 31 31 H 1.09002 * 109.46774 * 62.58207 * 11 10 9 32 32 H 1.09003 * 109.46958 * 182.57670 * 11 10 9 33 33 H 0.96995 * 120.00358 * 180.02562 * 15 14 12 34 34 H 1.08991 * 109.47309 * 314.67072 * 20 10 9 35 35 H 1.09002 * 109.46831 * 74.67076 * 20 10 9 36 36 H 1.08997 * 115.55100 * 29.42048 * 21 20 10 37 37 H 1.09000 * 117.49682 * 0.02562 * 22 21 20 38 38 H 1.08997 * 117.49210 * 145.02166 * 22 21 20 39 39 H 1.09001 * 117.49470 * 214.98011 * 23 21 20 40 40 H 1.08994 * 117.50066 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4084 -1.6705 -1.3756 6 7 3.5373 -1.2650 -2.1089 7 7 3.4425 -1.8121 -3.2722 8 7 2.3750 -2.5225 -3.3452 9 6 1.7101 -2.4726 -2.2122 10 7 0.5169 -3.1142 -1.9304 11 6 0.7310 -4.2491 -1.0226 12 6 1.7194 -5.2055 -1.6384 13 1 2.2022 -4.9564 -2.5718 14 6 2.0074 -6.3986 -1.0102 15 7 2.9401 -7.1888 -1.4952 16 14 1.0726 -6.8928 0.5298 17 1 -0.0728 -7.7609 0.1564 18 1 1.9793 -7.6347 1.4424 19 1 0.5685 -5.6754 1.2148 20 6 -0.1526 -3.5463 -3.1645 21 6 -1.6057 -3.9121 -2.8551 22 6 -2.0292 -5.3665 -3.0702 23 6 -2.5083 -4.2789 -4.0349 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.1667 1.6650 -1.0237 27 1 1.5166 2.0404 0.5902 28 1 3.0521 1.1538 0.4334 29 1 1.4396 -2.0846 0.4380 30 1 2.9757 -1.1978 0.5876 31 1 1.1212 -3.8853 -0.0720 32 1 -0.2154 -4.7630 -0.8540 33 1 3.1425 -8.0283 -1.0536 34 1 -0.1292 -2.7362 -3.8934 35 1 0.3623 -4.4164 -3.5717 36 1 -2.0591 -3.3736 -2.0229 37 1 -1.2725 -6.0628 -3.4316 38 1 -2.7615 -5.7847 -2.3795 39 1 -3.5556 -3.9820 -3.9786 40 1 -2.0669 -4.2600 -5.0312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354291284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = 153.003557 kcal Electronic energy + Delta-G solvation = -22423.913696 eV Core-core repulsion = 19277.515588 eV Total energy + Delta-G solvation = -3146.398107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.89568 -39.67447 -37.91255 -37.10923 -34.73175 -34.39378 -32.30737 -30.12045 -28.74032 -28.10006 -27.27332 -24.73395 -23.89393 -23.10325 -22.37291 -21.01344 -19.91904 -19.20815 -18.23446 -17.71976 -17.43465 -16.80022 -16.18789 -15.80360 -15.53120 -15.31658 -14.98008 -14.51104 -14.35728 -14.20225 -14.04473 -13.49870 -13.44344 -13.22473 -12.98128 -12.79145 -12.47821 -12.41273 -12.32414 -12.23974 -12.12081 -11.90607 -11.77677 -11.32771 -11.21729 -11.11927 -10.85081 -10.72214 -10.20628 -9.70744 -8.34952 -6.44678 0.09578 0.59062 1.29480 1.35537 1.37424 1.46192 1.53791 2.29656 2.66600 2.99385 3.04034 3.31031 3.65429 3.66981 3.93726 4.04027 4.10654 4.22971 4.25968 4.36411 4.47857 4.56581 4.63920 4.69850 4.77737 4.80160 4.86219 4.88902 4.94417 4.98029 5.10165 5.10667 5.14701 5.25533 5.37549 5.41200 5.57930 5.67883 5.80006 5.99309 6.12504 6.66308 7.20995 7.56225 8.81468 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.007559 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.043110 B = 3703.380611 C = 4331.823084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.172 4.172 3 C -0.109 4.109 4 C 0.151 3.849 5 N -0.367 5.367 6 N -0.104 5.104 7 N -0.066 5.066 8 N -0.390 5.390 9 C 0.454 3.546 10 N -0.435 5.435 11 C 0.170 3.830 12 C -0.564 4.564 13 H 0.037 0.963 14 C 0.019 3.981 15 N -0.942 5.942 16 Si 0.942 3.058 17 H -0.261 1.261 18 H -0.290 1.290 19 H -0.228 1.228 20 C 0.106 3.894 21 C -0.147 4.147 22 C -0.187 4.187 23 C -0.156 4.156 24 H 0.126 0.874 25 H 0.107 0.893 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.267 0.733 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.127 0.873 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.518 12.372 6.378 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.173 4.173 3 C -0.166 4.166 4 C 0.031 3.969 5 N -0.165 5.165 6 N -0.092 5.092 7 N -0.062 5.062 8 N -0.248 5.248 9 C 0.088 3.912 10 N -0.159 5.159 11 C 0.045 3.955 12 C -0.603 4.603 13 H 0.055 0.945 14 C -0.180 4.180 15 N -0.581 5.581 16 Si 0.764 3.236 17 H -0.186 1.186 18 H -0.216 1.216 19 H -0.150 1.150 20 C -0.022 4.022 21 C -0.166 4.166 22 C -0.224 4.224 23 C -0.193 4.193 24 H 0.144 0.856 25 H 0.126 0.874 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.140 0.860 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.662 12.879 5.838 18.329 hybrid contribution 0.445 -1.572 0.544 1.722 sum -11.217 11.306 6.382 17.157 Atomic orbital electron populations 1.24176 0.94647 1.03796 0.94759 1.21796 0.96046 0.94415 1.05033 1.20779 1.00388 0.93674 1.01724 1.21371 1.02473 0.97306 0.75716 1.51544 1.16525 1.33729 1.14750 1.82229 1.04599 1.22211 1.00144 1.77722 1.11569 1.04957 1.11978 1.74803 1.04033 1.22256 1.23727 1.23201 0.90781 0.91000 0.86196 1.59478 1.11348 1.27701 1.17417 1.20342 0.97865 0.86101 0.91215 1.21816 1.25154 1.04231 1.09083 0.94479 1.25906 0.95210 0.95919 1.00991 1.70109 1.32597 1.12620 1.42786 0.85805 0.78821 0.80364 0.78640 1.18586 1.21639 1.15022 1.21541 0.92811 0.99576 0.88225 1.22112 0.93043 0.99033 1.02401 1.23061 1.03576 0.91753 1.04001 1.23041 1.00128 1.01852 0.94268 0.85618 0.87442 0.93054 0.89341 0.91613 0.86659 0.86603 0.94067 0.90932 0.92424 0.90880 0.94430 0.85522 0.91102 0.87339 0.86033 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 13.91 67.79 0.94 -1.61 16 2 C -0.17 -3.77 5.63 -16.48 -0.09 -3.87 16 3 C -0.11 -2.07 10.02 71.24 0.71 -1.36 16 4 C 0.15 4.15 6.63 85.63 0.57 4.72 16 5 N -0.37 -13.79 3.67 -353.36 -1.30 -15.09 16 6 N -0.10 -4.39 13.93 37.02 0.52 -3.87 16 7 N -0.07 -3.11 13.38 37.02 0.50 -2.62 16 8 N -0.39 -18.63 10.83 -58.70 -0.64 -19.26 16 9 C 0.45 19.06 5.76 260.65 1.50 20.56 16 10 N -0.44 -16.32 4.68 -711.45 -3.33 -19.65 16 11 C 0.17 7.01 3.86 85.55 0.33 7.34 16 12 C -0.56 -30.33 8.09 25.60 0.21 -30.12 16 13 H 0.04 2.36 6.66 -2.91 -0.02 2.34 16 14 C 0.02 1.04 5.47 84.66 0.46 1.51 16 15 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 16 Si 0.94 39.74 27.42 68.60 1.88 41.62 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 18 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.23 -8.21 6.65 99.48 0.66 -7.55 16 20 C 0.11 3.84 4.58 86.30 0.40 4.23 16 21 C -0.15 -4.10 4.96 -10.79 -0.05 -4.15 16 22 C -0.19 -5.21 10.18 30.62 0.31 -4.89 16 23 C -0.16 -3.58 10.25 30.62 0.31 -3.26 16 24 H 0.13 1.78 8.05 -2.91 -0.02 1.76 16 25 H 0.11 2.08 7.99 -2.91 -0.02 2.06 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16 28 H 0.06 1.22 8.03 -2.39 -0.02 1.21 16 29 H 0.12 3.04 6.01 -2.39 -0.01 3.02 16 30 H 0.12 2.83 8.07 -2.38 -0.02 2.81 16 31 H 0.04 1.62 5.91 -2.39 -0.01 1.61 16 32 H 0.07 2.76 6.31 -2.39 -0.02 2.75 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.07 2.62 7.84 -2.39 -0.02 2.60 16 35 H 0.04 1.68 6.50 -2.39 -0.02 1.66 16 36 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.07 2.41 8.03 -2.39 -0.02 2.39 16 38 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -70.22 334.59 4.52 -65.70 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.99 Total: 21.63 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 5.60 Total: -10.89 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -3.95 Total: -118.06 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.88 Total: 41.62 kcal Total: -70.22 4.52 -65.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354291284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.702 kcal (2) G-P(sol) polarization free energy of solvation -70.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds