Wall clock time and date at job start Mon Mar 30 2020 02:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 115.54841 * 2 1 4 4 N 1.40585 * 127.39019 * 244.40187 * 3 2 1 5 5 N 1.28897 * 106.84185 * 180.02562 * 4 3 2 6 6 N 1.28416 * 110.35423 * 359.76093 * 5 4 3 7 7 C 1.31571 * 110.49886 * 0.39884 * 6 5 4 8 8 N 1.38223 * 126.45875 * 179.87865 * 7 6 5 9 9 C 1.36930 * 120.00044 * 97.70633 * 8 7 6 10 10 H 1.07991 * 120.00315 * 143.24060 * 9 8 7 11 11 C 1.38808 * 119.99633 * 323.23882 * 9 8 7 12 12 N 1.31563 * 119.99887 * 158.34103 * 11 9 8 13 13 Si 1.86804 * 119.99998 * 338.34280 * 11 9 8 14 14 H 1.48494 * 109.47038 * 91.64493 * 13 11 9 15 15 H 1.48499 * 109.46901 * 211.64109 * 13 11 9 16 16 H 1.48496 * 109.46939 * 331.64257 * 13 11 9 17 17 C 1.46495 * 119.99784 * 277.69802 * 8 7 6 18 18 C 1.54893 * 110.75259 * 120.00435 * 17 8 7 19 19 C 1.54271 * 104.31338 * 156.32264 * 18 17 8 20 20 C 1.53877 * 106.59606 * 336.32091 * 19 18 17 21 21 C 1.54262 * 106.60019 * 0.02562 * 20 19 18 22 22 C 1.53004 * 117.49970 * 145.66100 * 2 1 3 23 23 C 1.52999 * 117.50406 * 214.32711 * 2 1 3 24 24 H 1.09002 * 109.47130 * 55.02943 * 1 2 3 25 25 H 1.09002 * 109.47154 * 175.02207 * 1 2 3 26 26 H 1.08998 * 109.47536 * 295.02375 * 1 2 3 27 27 H 0.97000 * 120.00301 * 185.00954 * 12 11 9 28 28 H 1.08995 * 110.81769 * 356.67224 * 17 8 7 29 29 H 1.09002 * 110.48702 * 37.58001 * 18 17 8 30 30 H 1.08996 * 110.48796 * 275.06737 * 18 17 8 31 31 H 1.08994 * 110.02942 * 95.60432 * 19 18 17 32 32 H 1.08999 * 110.03186 * 217.03621 * 19 18 17 33 33 H 1.09007 * 110.02926 * 119.28387 * 20 19 18 34 34 H 1.08995 * 110.03388 * 240.66676 * 20 19 18 35 35 H 1.09006 * 110.48659 * 142.28520 * 21 20 19 36 36 H 1.08994 * 110.48751 * 264.79616 * 21 20 19 37 37 H 1.08994 * 117.50138 * 215.00613 * 22 2 1 38 38 H 1.08997 * 117.49377 * 0.03646 * 22 2 1 39 39 H 1.09001 * 117.49715 * 359.97438 * 23 2 1 40 40 H 1.08996 * 117.49794 * 144.97695 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.1618 1.3218 0.0000 4 7 2.9653 1.8839 -1.0073 5 7 3.3100 3.0569 -0.5991 6 7 2.8037 3.2941 0.5570 7 6 2.0974 2.2640 0.9708 8 7 1.4136 2.1647 2.1679 9 6 0.0692 2.4212 2.2118 10 1 -0.5706 1.8398 2.8591 11 6 -0.4712 3.4285 1.4243 12 7 -1.7526 3.4147 1.1266 13 14 0.6211 4.8035 0.7873 14 1 1.1537 4.4339 -0.5486 15 1 -0.1720 6.0540 0.6752 16 1 1.7496 5.0157 1.7288 17 6 2.1271 1.7848 3.3897 18 6 2.0154 2.8994 4.4595 19 6 2.2382 2.1664 5.7985 20 6 1.8696 0.6918 5.5590 21 6 1.4363 0.5800 4.0827 22 6 2.2364 -1.1206 0.7656 23 6 2.2365 -1.1207 -0.7653 24 1 -0.3633 0.5890 -0.8421 25 1 -0.3633 -1.0238 -0.0892 26 1 -0.3634 0.4347 0.9312 27 1 -2.1163 4.0765 0.5178 28 1 3.1715 1.5596 3.1741 29 1 1.0255 3.3548 4.4340 30 1 2.7859 3.6547 4.3053 31 1 3.2830 2.2461 6.0984 32 1 1.5947 2.5918 6.5686 33 1 2.7356 0.0558 5.7428 34 1 1.0478 0.4013 6.2135 35 1 1.7853 -0.3589 3.6527 36 1 0.3527 0.6586 3.9962 37 1 3.1712 -0.8745 1.2691 38 1 1.6111 -1.8582 1.2687 39 1 1.6113 -1.8583 -1.2684 40 1 3.1712 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354328648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:34 Heat of formation + Delta-G solvation = 166.068693 kcal Electronic energy + Delta-G solvation = -23420.432691 eV Core-core repulsion = 20274.601130 eV Total energy + Delta-G solvation = -3145.831560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.07641 -38.23356 -37.76885 -35.01950 -32.23430 -31.96194 -30.34350 -28.25463 -28.16331 -27.14957 -24.69153 -23.50892 -22.60142 -21.17946 -20.20310 -19.77839 -19.56176 -17.72822 -16.38537 -16.30462 -15.68569 -14.96228 -14.77277 -14.35178 -13.76632 -13.49709 -13.19707 -12.82591 -12.65759 -12.37295 -12.27938 -12.04175 -11.73343 -11.57571 -11.49841 -11.24726 -11.09795 -10.87773 -10.84987 -10.59510 -10.53517 -10.28468 -9.98384 -9.93246 -9.85067 -9.65254 -9.31945 -8.91267 -8.70421 -7.61140 -6.36588 -3.96122 1.86259 2.41770 3.02232 3.50900 3.55669 3.68506 3.82709 4.15858 4.40934 4.67022 4.79868 4.94373 5.03005 5.12674 5.14321 5.30700 5.61926 5.68386 5.72189 5.81714 5.90631 5.92571 5.95259 6.03704 6.06431 6.09883 6.13095 6.16562 6.25650 6.31464 6.32644 6.34584 6.46533 6.75410 6.79866 6.89431 6.92627 7.09344 7.68379 7.91771 8.55983 9.22150 9.36358 9.48285 10.68387 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.010953 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.596877 B = 2555.680346 C = 3366.076047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.119 3.881 3 N -0.360 5.360 4 N -0.116 5.116 5 N -0.054 5.054 6 N -0.360 5.360 7 C 0.503 3.497 8 N -0.492 5.492 9 C -0.296 4.296 10 H 0.105 0.895 11 C 0.055 3.945 12 N -0.867 5.867 13 Si 0.887 3.113 14 H -0.288 1.288 15 H -0.306 1.306 16 H -0.243 1.243 17 C 0.174 3.826 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.162 4.162 23 C -0.164 4.164 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.272 0.728 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 -9.859 4.613 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.032 3.968 3 N -0.161 5.161 4 N -0.102 5.102 5 N -0.050 5.050 6 N -0.219 5.219 7 C 0.143 3.857 8 N -0.213 5.213 9 C -0.424 4.424 10 H 0.123 0.877 11 C -0.153 4.153 12 N -0.503 5.503 13 Si 0.718 3.282 14 H -0.216 1.216 15 H -0.235 1.235 16 H -0.167 1.167 17 C 0.068 3.932 18 C -0.171 4.171 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.169 4.169 22 C -0.200 4.200 23 C -0.202 4.202 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.485 -9.045 3.704 11.208 hybrid contribution -0.162 0.327 -0.183 0.409 sum 5.323 -8.718 3.521 10.804 Atomic orbital electron populations 1.21619 0.88305 1.01963 1.06349 1.20891 0.93106 0.75752 1.07051 1.52106 1.35434 1.13472 1.15123 1.82250 1.10503 1.06104 1.11380 1.77817 1.14842 1.07345 1.05018 1.74893 1.17952 1.21620 1.07481 1.22028 0.90630 0.85390 0.87667 1.40908 1.06603 1.76583 0.97172 1.18609 0.79420 1.15036 1.29310 0.87738 1.25552 0.95551 0.96935 0.97245 1.69757 1.12843 1.35313 1.32365 0.86592 0.79434 0.81397 0.80824 1.21585 1.23533 1.16709 1.21735 0.93511 0.93619 0.84322 1.22694 1.03404 0.97963 0.93087 1.22056 1.00334 0.95495 0.98049 1.22042 1.00242 0.96505 0.97007 1.22729 1.02635 0.97624 0.93906 1.23409 1.02461 0.99636 0.94531 1.23377 1.02946 0.99221 0.94652 0.92056 0.91373 0.87413 0.91797 0.92033 0.89472 0.92424 0.92714 0.92212 0.92715 0.92195 0.92616 0.89778 0.88645 0.87065 0.87367 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.92 37.15 0.37 -1.79 16 2 C 0.12 2.03 2.94 -131.82 -0.39 1.64 16 3 N -0.36 -7.69 3.85 -49.12 -0.19 -7.88 16 4 N -0.12 -2.64 13.79 60.35 0.83 -1.80 16 5 N -0.05 -1.33 13.02 60.35 0.79 -0.55 16 6 N -0.36 -9.08 7.68 30.11 0.23 -8.85 16 7 C 0.50 11.66 5.47 -320.34 -1.75 9.90 16 8 N -0.49 -10.67 2.34 -107.19 -0.25 -10.92 16 9 C -0.30 -7.11 6.37 -15.06 -0.10 -7.20 16 10 H 0.11 2.57 6.55 -52.49 -0.34 2.23 16 11 C 0.05 1.46 5.33 -17.46 -0.09 1.37 16 12 N -0.87 -23.99 13.96 55.49 0.77 -23.22 16 13 Si 0.89 23.68 24.02 -169.99 -4.08 19.60 16 14 H -0.29 -8.27 6.33 56.52 0.36 -7.91 16 15 H -0.31 -8.28 7.11 56.52 0.40 -7.88 16 16 H -0.24 -6.53 6.72 56.52 0.38 -6.15 16 17 C 0.17 3.14 3.41 -65.76 -0.22 2.91 16 18 C -0.13 -2.29 6.38 -25.07 -0.16 -2.45 16 19 C -0.12 -1.65 6.80 -25.61 -0.17 -1.82 16 20 C -0.12 -1.54 6.80 -25.61 -0.17 -1.71 16 21 C -0.13 -1.97 6.35 -24.90 -0.16 -2.13 16 22 C -0.16 -2.16 10.18 -26.69 -0.27 -2.43 16 23 C -0.16 -2.20 10.02 -26.69 -0.27 -2.47 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 26 H 0.11 2.17 5.88 -51.93 -0.31 1.87 16 27 H 0.27 7.36 8.32 -40.82 -0.34 7.02 16 28 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 29 H 0.09 1.69 7.30 -51.93 -0.38 1.32 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.42 6.28 -51.93 -0.33 1.09 16 37 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -29.42 318.73 -6.52 -35.94 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.04 Total: -0.95 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -3.39 Total: -6.18 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 2.18 Total: -53.22 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -4.08 Total: 19.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.42 -6.52 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354328648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.010 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds