Wall clock time and date at job start Mon Mar 30 2020 02:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47112 * 2 1 4 4 N 1.46503 * 109.46668 * 119.99696 * 2 1 3 5 5 N 1.40444 * 126.82510 * 300.16699 * 4 2 1 6 6 C 1.30714 * 106.79571 * 180.26358 * 5 4 2 7 7 N 1.33244 * 108.94079 * 359.74980 * 6 5 4 8 8 C 1.30827 * 109.83478 * 0.02562 * 7 6 5 9 9 C 1.50700 * 125.96412 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47209 * 90.02317 * 9 8 7 11 11 C 1.46895 * 111.00108 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47221 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47002 * 304.99874 * 12 11 10 14 14 C 1.47194 * 109.47252 * 64.99992 * 12 11 10 15 15 N 5.39794 * 69.24047 * 211.83843 * 2 1 3 16 16 C 1.52997 * 109.47127 * 185.00300 * 12 11 10 17 17 C 1.50696 * 109.47268 * 174.99506 * 16 12 11 18 18 H 1.08004 * 119.99945 * 0.02562 * 17 16 12 19 19 C 1.37880 * 120.00438 * 179.97438 * 17 16 12 20 20 N 1.31512 * 119.99387 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00351 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46887 * 60.00191 * 21 19 17 23 23 H 1.48494 * 109.47241 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47221 * 300.00724 * 21 19 17 25 25 H 1.08997 * 109.47013 * 60.00069 * 1 2 3 26 26 H 1.09002 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47295 * 300.00273 * 1 2 3 28 28 H 1.09003 * 109.46867 * 239.99449 * 2 1 3 29 29 H 1.09000 * 109.47124 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46615 * 299.99814 * 3 2 1 31 31 H 1.08994 * 109.47546 * 59.99363 * 3 2 1 32 32 H 1.07990 * 125.53211 * 179.72015 * 6 5 4 33 33 H 1.09001 * 109.47187 * 330.01867 * 9 8 7 34 34 H 1.09003 * 109.47043 * 210.02127 * 9 8 7 35 35 H 1.00910 * 111.00029 * 56.04403 * 10 9 8 36 36 H 1.08997 * 109.47158 * 59.99752 * 11 10 9 37 37 H 1.09004 * 109.47713 * 299.99926 * 11 10 9 38 38 H 1.08998 * 109.46934 * 294.99762 * 16 12 11 39 39 H 1.09006 * 109.47500 * 54.99635 * 16 12 11 40 40 H 0.97002 * 119.99896 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.7662 -0.3397 2.5326 6 6 2.3923 -1.2130 3.2769 7 7 3.0135 -2.0882 2.4872 8 6 2.7946 -1.7875 1.2329 9 6 3.3251 -2.5366 0.0377 10 7 2.3699 -3.5842 -0.3471 11 6 2.8546 -4.3364 -1.5120 12 6 1.8352 -5.4156 -1.8825 13 1 1.6366 -6.0418 -1.0127 14 6 0.5841 -4.7779 -2.3239 15 7 -0.3832 -4.2880 -2.6627 16 6 2.3949 -6.2786 -3.0150 17 6 1.4461 -7.4150 -3.2967 18 1 0.5347 -7.5117 -2.7253 19 6 1.7409 -8.3307 -4.2845 20 7 2.8504 -8.2125 -4.9805 21 14 0.5644 -9.7388 -4.6340 22 1 -0.7569 -9.1920 -5.0345 23 1 1.1077 -10.5765 -5.7332 24 1 0.4073 -10.5676 -3.4118 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 2.4045 -1.2233 4.3567 33 1 4.2823 -2.9926 0.2903 34 1 3.4603 -1.8449 -0.7939 35 1 1.4565 -3.1935 -0.5239 36 1 3.8087 -4.8049 -1.2706 37 1 2.9863 -3.6571 -2.3542 38 1 2.5101 -5.6705 -3.9123 39 1 3.3649 -6.6796 -2.7210 40 1 3.0581 -8.8569 -5.6753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357165355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:32 Heat of formation + Delta-G solvation = 100.331369 kcal Electronic energy + Delta-G solvation = -20897.324069 eV Core-core repulsion = 17748.641924 eV Total energy + Delta-G solvation = -3148.682145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.24810 -37.65791 -36.39208 -35.46022 -33.74751 -32.23015 -31.15622 -30.74059 -27.68098 -27.44754 -25.29657 -23.64553 -22.72238 -21.90670 -21.24186 -20.16508 -17.46735 -16.75991 -16.67063 -16.07666 -15.80398 -15.12450 -14.82808 -14.59863 -14.31634 -13.80261 -13.56741 -13.49467 -13.10954 -12.91038 -12.72149 -12.61686 -12.60104 -12.12624 -11.89718 -11.84026 -11.73622 -11.36189 -11.32467 -11.07464 -10.79627 -10.60856 -10.32326 -10.03062 -9.84653 -9.77979 -9.55876 -9.29153 -8.59064 -8.47765 -6.12662 -4.15955 1.45200 2.07674 2.84564 3.29786 3.34001 3.37603 3.46552 3.53309 3.84495 4.06328 4.21574 4.39570 4.48865 4.53034 4.65419 4.69290 4.73160 5.14512 5.15729 5.20615 5.25541 5.31013 5.34718 5.44080 5.50038 5.56146 5.73094 5.81253 6.03792 6.18560 6.21691 6.35366 6.46428 6.63460 6.82514 7.13211 7.38736 7.47202 7.81996 8.03006 8.19108 8.30549 8.88154 9.49777 10.98143 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.028142 B = 0.003392 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.708333 B = 8253.534448 C = 8586.342891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 C -0.159 4.159 4 N -0.369 5.369 5 N -0.319 5.319 6 C 0.194 3.806 7 N -0.526 5.526 8 C 0.284 3.716 9 C 0.136 3.864 10 N -0.681 5.681 11 C 0.068 3.932 12 C 0.006 3.994 13 H 0.114 0.886 14 C 0.239 3.761 15 N -0.475 5.475 16 C 0.033 3.967 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.064 3.936 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.215 0.785 33 H 0.115 0.885 34 H 0.052 0.948 35 H 0.338 0.662 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.025 0.975 39 H 0.042 0.958 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 16.892 10.508 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 C -0.217 4.217 4 N -0.162 5.162 5 N -0.147 5.147 6 C -0.109 4.109 7 N -0.253 5.253 8 C 0.007 3.993 9 C 0.004 3.996 10 N -0.313 5.313 11 C -0.061 4.061 12 C -0.016 4.016 13 H 0.131 0.869 14 C -0.077 4.077 15 N -0.152 5.152 16 C -0.005 4.005 17 C -0.566 4.566 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.232 0.768 33 H 0.133 0.867 34 H 0.070 0.930 35 H 0.156 0.844 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.204 17.469 10.640 20.490 hybrid contribution -0.493 -0.461 -1.000 1.206 sum 0.711 17.008 9.640 19.563 Atomic orbital electron populations 1.22130 0.92601 1.03527 1.03622 1.21465 0.96261 0.94243 0.83419 1.22116 1.01734 0.94121 1.03697 1.50623 1.37844 1.21835 1.05888 1.77947 1.24974 1.24971 0.86778 1.25961 0.94044 0.89715 1.01184 1.70486 1.27139 1.28192 0.99507 1.24225 0.92272 0.87362 0.95487 1.20412 0.97637 0.91985 0.89526 1.60500 1.04816 1.26267 1.39740 1.22155 0.99323 0.94963 0.89655 1.19349 0.84770 0.95031 1.02418 0.86873 1.29343 0.94493 0.92026 0.91853 1.81039 1.11806 1.11689 1.10680 1.19162 0.97113 0.93369 0.90880 1.21095 1.06343 1.10283 1.18918 0.92557 1.24940 0.95271 0.97919 0.95747 1.69921 1.23883 1.36629 1.22558 0.86650 0.81216 0.82146 0.78059 1.20288 1.21171 1.19970 0.90320 0.91728 0.90999 0.87949 0.92010 0.90350 0.90991 0.76835 0.86694 0.92985 0.84433 0.88240 0.94236 0.95696 0.94024 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.47 37.16 0.35 -1.09 16 2 C 0.15 1.32 3.68 -67.93 -0.25 1.07 16 3 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 4 N -0.37 -4.24 3.28 -51.87 -0.17 -4.41 16 5 N -0.32 -4.00 12.59 29.29 0.37 -3.63 16 6 C 0.19 2.31 13.03 -91.81 -1.20 1.11 16 7 N -0.53 -7.16 11.19 -11.97 -0.13 -7.30 16 8 C 0.28 3.48 7.50 -155.70 -1.17 2.31 16 9 C 0.14 1.42 5.85 -4.98 -0.03 1.39 16 10 N -0.68 -8.47 6.49 -115.06 -0.75 -9.21 16 11 C 0.07 0.90 5.12 -3.82 -0.02 0.88 16 12 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 13 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 14 C 0.24 4.59 12.98 -20.76 -0.27 4.33 16 15 N -0.48 -9.84 18.54 42.15 0.78 -9.06 16 16 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 17 C -0.53 -13.75 8.60 -34.44 -0.30 -14.05 16 18 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 21 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 0.80 6.73 -51.93 -0.35 0.45 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.22 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.44 7.12 -51.93 -0.37 0.07 16 35 H 0.34 4.41 7.80 -39.29 -0.31 4.11 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -31.48 347.54 -7.97 -39.45 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.05 Total: -0.09 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.97 Total: -2.73 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.84 Total: -57.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.48 -7.97 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357165355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.779 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds