Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47008 * 2 1 4 4 N 1.46499 * 109.47503 * 120.00427 * 2 1 3 5 5 N 1.40441 * 126.81913 * 299.97744 * 4 2 1 6 6 C 1.30720 * 106.79068 * 180.02562 * 5 4 2 7 7 N 1.33234 * 108.94479 * 0.24000 * 6 5 4 8 8 C 1.30832 * 109.83313 * 359.58957 * 7 6 5 9 9 C 1.50694 * 125.96616 * 180.19297 * 8 7 6 10 10 N 1.46906 * 109.47374 * 270.24776 * 9 8 7 11 11 C 1.46901 * 110.99920 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.46945 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.47309 * 54.99417 * 12 11 10 14 14 C 1.47201 * 109.47180 * 294.99658 * 12 11 10 15 15 N 5.38774 * 149.84688 * 278.06939 * 2 1 3 16 16 C 1.53001 * 109.47405 * 174.99693 * 12 11 10 17 17 C 1.50698 * 109.47339 * 184.99824 * 16 12 11 18 18 H 1.07996 * 119.99924 * 359.97438 * 17 16 12 19 19 C 1.37876 * 119.99818 * 180.02562 * 17 16 12 20 20 N 1.31512 * 120.00419 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99890 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47220 * 119.99802 * 21 19 17 24 24 H 1.48493 * 109.47180 * 239.99654 * 21 19 17 25 25 H 1.09007 * 109.46657 * 299.99701 * 1 2 3 26 26 H 1.08999 * 109.47267 * 59.99584 * 1 2 3 27 27 H 1.08993 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46657 * 240.00299 * 2 1 3 29 29 H 1.09003 * 109.46648 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47445 * 300.00306 * 3 2 1 31 31 H 1.08993 * 109.46665 * 60.00436 * 3 2 1 32 32 H 1.08002 * 125.52440 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47419 * 30.24859 * 9 8 7 34 34 H 1.09000 * 109.47317 * 150.24577 * 9 8 7 35 35 H 1.00903 * 110.99862 * 303.95511 * 10 9 8 36 36 H 1.09007 * 109.47156 * 299.99883 * 11 10 9 37 37 H 1.09000 * 109.47349 * 60.00328 * 11 10 9 38 38 H 1.08997 * 109.47061 * 305.00180 * 16 12 11 39 39 H 1.09003 * 109.46949 * 64.99666 * 16 12 11 40 40 H 0.96996 * 120.00716 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6907 1.1961 5 7 1.7695 -0.3378 2.5324 6 6 2.3903 -1.2150 3.2766 7 7 3.0140 -2.0882 2.4869 8 6 2.7944 -1.7878 1.2325 9 6 3.3233 -2.5378 0.0373 10 7 4.6260 -1.9817 -0.3526 11 6 5.1730 -2.6895 -1.5178 12 6 6.5271 -2.0840 -1.8928 13 1 7.1860 -2.1018 -1.0246 14 6 6.3369 -0.6933 -2.3360 15 7 6.1887 0.3799 -2.6795 16 6 7.1542 -2.8991 -3.0257 17 6 8.5393 -2.3788 -3.3118 18 1 8.9328 -1.5495 -2.7429 19 6 9.3037 -2.9609 -4.3007 20 7 8.8243 -3.9705 -4.9939 21 14 11.0203 -2.3156 -4.6558 22 1 11.3219 -1.1832 -3.7438 23 1 12.0113 -3.4007 -4.4414 24 1 11.0926 -1.8504 -6.0642 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 2.3999 -1.2272 4.3565 33 1 3.4394 -3.5913 0.2915 34 1 2.6232 -2.4393 -0.7924 35 1 4.5574 -0.9910 -0.5311 36 1 5.3019 -3.7443 -1.2747 37 1 4.4857 -2.5916 -2.3581 38 1 7.2134 -3.9465 -2.7300 39 1 6.5398 -2.8086 -3.9215 40 1 9.3621 -4.3803 -5.6893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357165372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = 81.350480 kcal Electronic energy + Delta-G solvation = -20900.699279 eV Core-core repulsion = 17751.194061 eV Total energy + Delta-G solvation = -3149.505218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.12051 -38.95269 -37.18800 -36.68047 -35.47722 -33.74396 -32.11573 -31.80243 -28.87133 -28.32204 -26.64732 -24.48837 -23.94381 -23.56731 -22.11145 -20.98353 -18.59744 -18.33748 -18.03837 -17.06551 -16.91980 -16.54657 -15.87662 -15.51238 -15.34024 -14.91908 -14.87999 -14.38998 -14.30421 -14.16638 -13.93116 -13.80426 -13.51658 -13.30238 -13.24634 -13.06286 -12.75911 -12.59974 -12.53066 -12.48030 -12.32647 -12.07794 -11.95807 -11.41820 -11.16423 -10.95055 -10.72187 -10.57969 -10.53393 -9.52490 -8.18281 -6.25456 0.56750 1.29450 1.39573 1.43246 1.52876 1.92189 1.94535 1.98245 2.42608 2.98020 3.17313 3.25566 3.30656 3.35607 3.79486 3.82004 3.94681 3.96304 4.13908 4.40777 4.44402 4.48140 4.57488 4.65278 4.70322 4.75877 4.79315 4.96238 5.01190 5.08361 5.12891 5.34983 5.50691 5.51084 5.64783 5.76112 5.82161 5.90892 6.12598 6.23024 6.75633 6.89555 7.14266 7.43037 8.92573 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.003394 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.995686 B = 8247.483107 C = 8581.789775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 C -0.156 4.156 4 N -0.368 5.368 5 N -0.338 5.338 6 C 0.187 3.813 7 N -0.555 5.555 8 C 0.275 3.725 9 C 0.138 3.862 10 N -0.688 5.688 11 C 0.081 3.919 12 C 0.017 3.983 13 H 0.119 0.881 14 C 0.249 3.751 15 N -0.502 5.502 16 C 0.039 3.961 17 C -0.538 4.538 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.921 5.921 21 Si 0.944 3.056 22 H -0.272 1.272 23 H -0.274 1.274 24 H -0.285 1.285 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.242 0.758 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.333 0.667 36 H 0.116 0.884 37 H 0.051 0.949 38 H 0.040 0.960 39 H 0.006 0.994 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.425 3.120 10.723 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 C -0.214 4.214 4 N -0.161 5.161 5 N -0.166 5.166 6 C -0.115 4.115 7 N -0.283 5.283 8 C -0.002 4.002 9 C 0.007 3.993 10 N -0.320 5.320 11 C -0.049 4.049 12 C -0.005 4.005 13 H 0.136 0.864 14 C -0.067 4.067 15 N -0.180 5.180 16 C 0.000 4.000 17 C -0.576 4.576 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.561 5.561 21 Si 0.771 3.229 22 H -0.196 1.196 23 H -0.199 1.199 24 H -0.211 1.211 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.258 0.742 33 H 0.142 0.858 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.134 0.866 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.527 4.620 10.857 21.129 hybrid contribution 0.781 0.344 -1.045 1.349 sum -16.746 4.964 9.812 20.034 Atomic orbital electron populations 1.22075 0.91470 1.03202 1.04186 1.21758 0.97091 0.94269 0.82995 1.22087 1.00855 0.94263 1.04151 1.50796 1.37769 1.21365 1.06121 1.77903 1.26466 1.24793 0.87468 1.26564 0.93417 0.89090 1.02445 1.70473 1.26760 1.30670 1.00388 1.24507 0.91834 0.88135 0.95687 1.20514 0.89708 0.99375 0.89676 1.60423 1.24904 1.07587 1.39048 1.22001 0.92462 0.99951 0.90470 1.19239 0.98934 0.81719 1.00564 0.86379 1.29708 0.90844 0.94985 0.91155 1.81063 1.11475 1.14101 1.11366 1.18993 0.93726 0.95514 0.91787 1.21585 1.01360 1.16417 1.18287 0.93075 1.25647 1.01612 0.95248 0.96041 1.70014 1.38607 1.24134 1.23362 0.85705 0.80921 0.78559 0.77745 1.19627 1.19937 1.21090 0.92199 0.88124 0.91993 0.86543 0.93696 0.88314 0.91942 0.74181 0.85833 0.90368 0.84931 0.86611 0.93101 0.94200 0.97541 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.47 71.98 0.68 -1.25 16 2 C 0.14 2.26 3.68 44.99 0.17 2.42 16 3 C -0.16 -2.62 9.47 71.98 0.68 -1.94 16 4 N -0.37 -8.01 3.28 -318.03 -1.04 -9.05 16 5 N -0.34 -8.23 12.60 -61.24 -0.77 -9.00 16 6 C 0.19 4.30 13.03 180.77 2.36 6.65 16 7 N -0.55 -14.54 11.19 -191.78 -2.15 -16.68 16 8 C 0.28 6.36 7.50 138.22 1.04 7.39 16 9 C 0.14 2.56 5.84 85.55 0.50 3.06 16 10 N -0.69 -15.65 6.49 -517.93 -3.36 -19.01 16 11 C 0.08 1.94 5.12 86.30 0.44 2.38 16 12 C 0.02 0.58 2.42 -12.60 -0.03 0.55 16 13 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 14 C 0.25 9.31 12.98 89.44 1.16 10.47 16 15 N -0.50 -20.42 18.54 20.01 0.37 -20.05 16 16 C 0.04 1.68 4.42 29.85 0.13 1.81 16 17 C -0.54 -27.79 8.60 25.60 0.22 -27.57 16 18 H 0.05 2.65 7.59 -2.91 -0.02 2.63 16 19 C 0.01 0.73 5.46 84.65 0.46 1.19 16 20 N -0.92 -51.58 13.29 21.45 0.28 -51.30 16 21 Si 0.94 42.89 29.54 68.60 2.03 44.91 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.12 1.53 6.74 -2.38 -0.02 1.52 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.24 3.62 8.06 -2.91 -0.02 3.60 16 33 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 1.06 7.13 -2.39 -0.02 1.04 16 35 H 0.33 8.15 7.80 -89.69 -0.70 7.45 16 36 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -66.76 347.57 3.51 -63.25 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.34 Total: 11.76 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 7.81 Total: 5.17 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.66 Total: -125.09 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -66.76 3.51 -63.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357165372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.602 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds