Wall clock time and date at job start Mon Mar 30 2020 01:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99652 * 2 1 4 4 C 1.50696 * 109.47219 * 269.99730 * 3 2 1 5 5 H 1.07997 * 120.00302 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99959 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00105 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99908 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47159 * 90.00597 * 8 6 4 10 10 H 1.48503 * 109.46930 * 210.00448 * 8 6 4 11 11 H 1.48496 * 109.47142 * 330.00453 * 8 6 4 12 12 C 1.34770 * 120.00090 * 180.02562 * 2 1 3 13 13 O 1.21606 * 120.00204 * 184.54867 * 12 2 1 14 14 C 1.47431 * 120.00173 * 4.54980 * 12 2 1 15 15 C 1.38046 * 126.41498 * 322.57882 * 14 12 2 16 16 N 1.34255 * 107.41778 * 179.73484 * 15 14 12 17 17 C 1.46503 * 125.75386 * 179.97438 * 16 15 14 18 18 N 1.39939 * 108.49336 * 0.02562 * 16 15 14 19 19 C 1.30449 * 108.89480 * 359.97438 * 18 16 15 20 20 C 1.50698 * 125.98696 * 180.02562 * 19 18 16 21 21 C 1.53779 * 113.61542 * 39.09810 * 20 19 18 22 22 C 1.53951 * 87.02100 * 220.04769 * 21 20 19 23 23 C 1.53778 * 87.11315 * 25.36350 * 22 21 20 24 24 H 1.08997 * 109.47039 * 264.79581 * 1 2 3 25 25 H 1.08998 * 109.47346 * 24.79842 * 1 2 3 26 26 H 1.09006 * 109.47090 * 144.80239 * 1 2 3 27 27 H 1.09000 * 109.47149 * 30.00692 * 3 2 1 28 28 H 1.09003 * 109.47175 * 150.00163 * 3 2 1 29 29 H 0.97001 * 120.00025 * 179.97438 * 7 6 4 30 30 H 1.08000 * 126.28995 * 359.75848 * 15 14 12 31 31 H 1.08999 * 109.46667 * 90.00540 * 17 16 15 32 32 H 1.09005 * 109.47336 * 210.00061 * 17 16 15 33 33 H 1.08995 * 109.47364 * 330.00397 * 17 16 15 34 34 H 1.09000 * 112.85123 * 170.29766 * 20 19 18 35 35 H 1.09004 * 113.61321 * 334.56904 * 21 20 19 36 36 H 1.08993 * 113.61767 * 105.46891 * 21 20 19 37 37 H 1.09002 * 113.53757 * 270.80793 * 22 21 20 38 38 H 1.08999 * 113.74668 * 139.94473 * 22 21 20 39 39 H 1.09002 * 113.61698 * 220.09575 * 23 22 21 40 40 H 1.08994 * 113.61830 * 89.18514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6731 8 14 3.4367 3.4177 -3.4339 9 1 2.3064 4.2603 -3.9002 10 1 4.6968 4.2010 -3.4966 11 1 3.5541 2.2207 -4.3049 12 6 2.1389 -1.1671 -0.0005 13 8 3.3521 -1.1689 0.0830 14 6 1.4053 -2.4419 -0.1024 15 6 0.1883 -2.7357 0.4791 16 7 -0.1278 -3.9945 0.1356 17 6 -1.3398 -4.7128 0.5373 18 7 0.8962 -4.5052 -0.6700 19 6 1.8135 -3.5896 -0.8182 20 6 3.0855 -3.7312 -1.6138 21 6 2.9068 -4.5098 -2.9278 22 6 4.2620 -5.1744 -2.6246 23 6 3.9831 -4.8866 -1.1400 24 1 -0.3633 -0.0932 1.0234 25 1 -0.3634 0.9329 -0.4310 26 1 -0.3633 -0.8398 -0.5924 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1385 0.5138 29 1 4.0299 4.4441 -0.8503 30 1 -0.4014 -2.0744 1.0966 31 1 -2.1248 -4.5411 -0.1992 32 1 -1.1263 -5.7800 0.5986 33 1 -1.6702 -4.3518 1.5112 34 1 3.6166 -2.7870 -1.7345 35 1 2.0669 -5.2044 -2.9130 36 1 2.9186 -3.8772 -3.8153 37 1 5.1150 -4.6251 -3.0231 38 1 4.2933 -6.2371 -2.8650 39 1 4.8624 -4.5575 -0.5862 40 1 3.4380 -5.6843 -0.6355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442355394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:05 Heat of formation + Delta-G solvation = 41.771202 kcal Electronic energy + Delta-G solvation = -21832.265229 eV Core-core repulsion = 18648.750973 eV Total energy + Delta-G solvation = -3183.514255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.51010 -40.05457 -39.38950 -36.53423 -34.75296 -34.15367 -31.72429 -29.49134 -28.70731 -27.49403 -26.52570 -26.15032 -24.87608 -22.73827 -21.75525 -20.29857 -19.74669 -18.67261 -18.06694 -17.34598 -16.88604 -16.61963 -16.35899 -16.11322 -15.80223 -15.76001 -14.60105 -14.49180 -14.13032 -13.92265 -13.71613 -13.55364 -13.37003 -13.36228 -13.24304 -13.10134 -12.89377 -12.75625 -12.52353 -12.19688 -12.03121 -11.70998 -11.62400 -11.40108 -11.20419 -10.65976 -10.62639 -10.21620 -9.60427 -9.33507 -8.20809 -6.35704 0.65192 1.16967 1.36555 1.39768 1.49789 1.51355 2.18504 2.41818 2.61696 3.08208 3.37099 3.59844 3.78964 3.81242 3.90849 4.03305 4.16929 4.27255 4.41796 4.48937 4.55018 4.63069 4.67855 4.75143 4.77289 4.82904 4.90231 4.92413 5.04305 5.05559 5.05736 5.25926 5.27647 5.42704 5.57123 5.58875 5.87489 5.98440 6.08573 6.58519 6.72428 6.83255 7.29937 7.53378 8.85959 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.005586 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.908784 B = 5011.059549 C = 6079.429200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.606 5.606 3 C 0.261 3.739 4 C -0.543 4.543 5 H 0.049 0.951 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.966 3.034 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.577 3.423 13 O -0.597 6.597 14 C -0.310 4.310 15 C 0.114 3.886 16 N -0.357 5.357 17 C 0.088 3.912 18 N -0.310 5.310 19 C 0.124 3.876 20 C -0.055 4.055 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.118 4.118 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.028 0.972 28 H -0.001 1.001 29 H 0.268 0.732 30 H 0.222 0.778 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 -17.939 0.939 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.336 5.336 3 C 0.140 3.860 4 C -0.582 4.582 5 H 0.067 0.933 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.200 1.200 12 C 0.366 3.634 13 O -0.479 6.479 14 C -0.325 4.325 15 C -0.038 4.038 16 N -0.136 5.136 17 C -0.051 4.051 18 N -0.132 5.132 19 C -0.042 4.042 20 C -0.075 4.075 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.157 4.157 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.018 0.982 29 H 0.076 0.924 30 H 0.238 0.762 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.235 -19.040 0.799 22.647 hybrid contribution 0.757 1.808 -0.353 1.991 sum -11.479 -17.233 0.446 20.710 Atomic orbital electron populations 1.22092 0.78304 1.03634 1.02470 1.47989 1.08262 1.05987 1.71390 1.18777 0.91257 0.79987 0.96015 1.21682 1.36968 1.06522 0.92987 0.93302 1.25822 0.94820 0.96350 1.01901 1.70047 1.38901 1.14769 1.32945 0.85445 0.78201 0.78163 0.79188 1.18667 1.20436 1.20023 1.17829 0.86278 0.83511 0.75784 1.90671 1.16207 1.87992 1.53006 1.20294 1.00522 0.96707 1.14999 1.23603 0.94446 0.87809 0.97987 1.48699 1.17791 1.10286 1.36790 1.22428 0.80963 0.98502 1.03178 1.76936 0.98716 1.21878 1.15666 1.22173 0.95742 0.89907 0.96367 1.21154 0.90705 0.99363 0.96315 1.22946 0.99133 0.98658 0.95150 1.22788 0.96820 1.01989 0.94693 1.22848 0.98536 0.96376 0.97922 0.89964 0.91212 0.90294 0.95366 0.98247 0.92356 0.76154 0.88543 0.88481 0.85961 0.90342 0.88985 0.91533 0.89807 0.88919 0.91986 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 9.03 127.77 1.15 3.52 16 2 N -0.61 -27.30 2.86 -855.04 -2.44 -29.74 16 3 C 0.26 14.55 5.17 85.63 0.44 14.99 16 4 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 6 C 0.01 0.59 5.46 84.65 0.46 1.06 16 7 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 8 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 C 0.58 26.96 7.39 86.67 0.64 27.61 16 13 O -0.60 -33.80 15.45 -4.05 -0.06 -33.86 16 14 C -0.31 -11.29 5.38 -20.15 -0.11 -11.40 16 15 C 0.11 2.80 9.20 84.28 0.78 3.57 16 16 N -0.36 -7.90 3.98 -367.78 -1.46 -9.36 16 17 C 0.09 0.83 11.44 127.77 1.46 2.29 16 18 N -0.31 -9.16 12.12 -46.68 -0.57 -9.73 16 19 C 0.12 4.36 6.31 43.51 0.27 4.63 16 20 C -0.05 -1.90 3.94 -11.01 -0.04 -1.95 16 21 C -0.12 -3.32 7.63 31.18 0.24 -3.08 16 22 C -0.13 -2.97 8.09 31.18 0.25 -2.72 16 23 C -0.12 -3.40 7.63 31.12 0.24 -3.16 16 24 H 0.08 1.84 7.32 -2.39 -0.02 1.82 16 25 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 26 H 0.08 2.09 5.89 -2.38 -0.01 2.08 16 27 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 28 H 0.00 -0.04 7.36 -2.39 -0.02 -0.06 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.22 3.50 6.28 -2.91 -0.02 3.48 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 3.35 7.02 -2.39 -0.02 3.33 16 35 H 0.09 2.38 7.79 -2.38 -0.02 2.36 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 2.35 8.09 -2.39 -0.02 2.34 16 Total: -1.00 -82.65 333.60 4.84 -77.81 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.03 Total: 10.25 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 6.03 Total: 3.33 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -4.19 Total: -105.35 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.06 Total: -33.86 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -82.65 4.84 -77.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442355394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.585 kcal (2) G-P(sol) polarization free energy of solvation -82.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds