Wall clock time and date at job start Mon Mar 30 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47222 * 2 1 4 4 N 1.28714 * 125.86767 * 90.01940 * 3 2 1 5 5 N 1.28632 * 110.17641 * 179.97438 * 4 3 2 6 6 C 1.33769 * 108.88751 * 359.97438 * 5 4 3 7 7 C 1.50707 * 126.75285 * 180.02562 * 6 5 4 8 8 C 1.35315 * 125.86693 * 269.71865 * 3 2 1 9 9 C 1.50698 * 126.90941 * 0.02562 * 8 3 2 10 10 N 1.46900 * 109.47250 * 83.01440 * 9 8 3 11 11 C 1.46895 * 111.00075 * 198.27456 * 10 9 8 12 12 C 1.50703 * 109.47474 * 172.23722 * 11 10 9 13 13 H 1.07997 * 119.99660 * 4.48171 * 12 11 10 14 14 C 1.37869 * 120.00225 * 184.47822 * 12 11 10 15 15 N 1.31518 * 120.00238 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00111 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47151 * 60.00137 * 16 14 12 18 18 H 1.48495 * 109.47255 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47272 * 300.00299 * 16 14 12 20 20 C 1.46897 * 111.00409 * 74.31716 * 10 9 8 21 21 C 1.52997 * 109.47068 * 65.80421 * 20 10 9 22 22 C 1.47199 * 109.47613 * 183.62317 * 21 20 10 23 23 N 7.91133 * 84.63253 * 324.21590 * 2 1 3 24 24 H 1.09004 * 109.46840 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47459 * 299.99783 * 1 2 3 26 26 H 1.09003 * 109.47027 * 60.00569 * 1 2 3 27 27 H 1.09004 * 109.47386 * 239.99685 * 2 1 3 28 28 H 1.08996 * 109.47063 * 119.99800 * 2 1 3 29 29 H 1.08998 * 109.46997 * 84.50033 * 7 6 5 30 30 H 1.08997 * 109.46830 * 204.50484 * 7 6 5 31 31 H 1.09001 * 109.46761 * 324.50127 * 7 6 5 32 32 H 1.09003 * 109.46930 * 203.00955 * 9 8 3 33 33 H 1.09002 * 109.47521 * 323.00754 * 9 8 3 34 34 H 1.09007 * 109.47344 * 292.23699 * 11 10 9 35 35 H 1.09000 * 109.47537 * 52.23268 * 11 10 9 36 36 H 0.96999 * 119.99932 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.47628 * 185.80646 * 20 10 9 38 38 H 1.09005 * 109.47034 * 305.81098 * 20 10 9 39 39 H 1.09005 * 109.47492 * 303.62545 * 21 20 10 40 40 H 1.09008 * 109.47009 * 63.62534 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2701 2.0921 1.0431 5 7 2.6833 3.2596 0.6952 6 6 2.7086 3.3297 -0.6404 7 6 3.1284 4.5134 -1.4735 8 6 2.2877 2.1269 -1.0966 9 6 2.1451 1.7040 -2.5359 10 7 0.7490 1.8738 -2.9602 11 6 0.4683 1.0922 -4.1719 12 6 -1.0088 1.1368 -4.4676 13 1 -1.6622 1.7486 -3.8632 14 6 -1.5259 0.3968 -5.5096 15 7 -0.7303 -0.3485 -6.2453 16 14 -3.3567 0.4527 -5.8765 17 1 -3.7555 1.8474 -6.1944 18 1 -3.6561 -0.4248 -7.0364 19 1 -4.1140 -0.0203 -4.6899 20 6 0.4293 3.2930 -3.1633 21 6 1.2415 3.8353 -4.3411 22 6 0.9869 5.2774 -4.4902 23 7 0.7899 6.3897 -4.6057 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.2119 4.5084 -1.5919 30 1 2.6554 4.4538 -2.4537 31 1 2.8213 5.4340 -0.9773 32 1 2.7922 2.3193 -3.1612 33 1 2.4310 0.6570 -2.6371 34 1 1.0199 1.5139 -5.0122 35 1 0.7768 0.0583 -4.0170 36 1 -1.0943 -0.8694 -6.9781 37 1 -0.6344 3.3991 -3.3761 38 1 0.6772 3.8540 -2.2622 39 1 2.3032 3.6709 -4.1567 40 1 0.9469 3.3180 -5.2543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459891806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:09 Heat of formation + Delta-G solvation = 122.052561 kcal Electronic energy + Delta-G solvation = -22212.477614 eV Core-core repulsion = 19064.737371 eV Total energy + Delta-G solvation = -3147.740243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.04996 -38.14551 -36.07479 -35.36025 -33.16857 -32.31731 -31.07343 -30.30923 -28.19329 -26.87546 -25.38732 -24.31996 -23.55398 -20.99907 -20.87654 -19.59082 -17.57255 -16.92839 -16.54003 -16.06934 -15.47096 -14.87654 -14.66085 -14.27181 -14.18644 -13.78889 -13.44850 -13.37975 -13.14807 -12.66039 -12.45919 -12.34081 -12.20459 -12.02340 -11.92120 -11.65192 -11.57786 -11.37936 -11.21764 -11.12576 -10.90644 -10.74667 -10.53305 -10.30136 -10.05289 -9.72277 -9.45018 -8.72213 -8.60284 -7.63429 -6.21698 -4.24020 1.83095 2.60887 2.74503 3.02108 3.05289 3.22961 3.28438 3.31305 4.20086 4.29736 4.50898 4.65769 4.74875 4.98737 5.03468 5.08957 5.16664 5.21029 5.21707 5.38729 5.49898 5.58999 5.68134 5.73965 5.79397 5.86508 5.89524 5.99759 6.15462 6.20758 6.42905 6.44257 6.53282 6.86305 6.94097 7.01586 7.52750 7.71718 7.84510 7.89705 8.23410 8.78350 8.82659 9.42113 10.88442 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.006637 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.726548 B = 4218.029876 C = 5615.435607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.275 5.275 4 N -0.098 5.098 5 N -0.276 5.276 6 C -0.029 4.029 7 C -0.071 4.071 8 C 0.011 3.989 9 C 0.112 3.888 10 N -0.522 5.522 11 C 0.188 3.812 12 C -0.514 4.514 13 H 0.064 0.936 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.069 3.931 21 C -0.076 4.076 22 C 0.221 3.779 23 N -0.455 5.455 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.001 0.999 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.696 -0.141 6.682 9.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.004 4.004 3 N -0.069 5.069 4 N -0.076 5.076 5 N -0.142 5.142 6 C -0.169 4.169 7 C -0.129 4.129 8 C -0.122 4.122 9 C -0.018 4.018 10 N -0.245 5.245 11 C 0.064 3.936 12 C -0.552 4.552 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.062 4.062 21 C -0.117 4.117 22 C -0.097 4.097 23 N -0.133 5.133 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.019 0.981 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.095 1.179 8.300 10.365 hybrid contribution -0.513 -0.508 -1.998 2.125 sum 5.582 0.671 6.302 8.445 Atomic orbital electron populations 1.22185 0.92312 1.03760 1.04764 1.22041 0.97205 0.76362 1.04808 1.47251 1.41792 1.13518 1.04292 1.78195 1.18064 0.99138 1.12204 1.74960 1.16597 1.10686 1.12004 1.21660 1.07511 0.96176 0.91516 1.20176 1.01346 0.93604 0.97805 1.21966 1.05607 0.92655 0.91996 1.20610 0.92691 1.01740 0.86764 1.62390 1.16826 1.07559 1.37732 1.19903 0.97163 0.92773 0.83780 1.21038 0.92417 1.27635 1.14105 0.91816 1.24914 0.97960 0.95140 0.96021 1.69914 1.35111 1.28734 1.19583 0.86623 0.85283 0.78088 0.77848 1.20218 1.21336 1.20163 1.22120 1.01095 0.88858 0.94091 1.20271 1.03081 0.82805 1.05558 1.29193 0.92832 0.95025 0.92601 1.81141 1.09380 1.13140 1.09595 0.90318 0.92327 0.88700 0.87883 0.88540 0.91029 0.90753 0.90846 0.91873 0.89588 0.98135 0.94481 0.92672 0.88768 0.91541 0.88165 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.12 1.31 6.91 -4.04 -0.03 1.29 16 3 N -0.27 -3.96 3.34 -57.05 -0.19 -4.15 16 4 N -0.10 -1.62 13.17 60.35 0.79 -0.83 16 5 N -0.28 -4.74 12.41 33.29 0.41 -4.33 16 6 C -0.03 -0.44 6.63 -82.78 -0.55 -0.99 16 7 C -0.07 -0.84 9.71 36.01 0.35 -0.49 16 8 C 0.01 0.16 5.96 -82.09 -0.49 -0.33 16 9 C 0.11 1.50 4.81 -4.98 -0.02 1.47 16 10 N -0.52 -8.35 4.50 -237.52 -1.07 -9.42 16 11 C 0.19 3.74 4.38 -4.98 -0.02 3.72 16 12 C -0.51 -11.97 8.61 -34.44 -0.30 -12.27 16 13 H 0.06 1.50 6.77 -52.49 -0.36 1.14 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.89 -23.31 13.29 55.43 0.74 -22.57 16 16 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.07 1.04 4.58 -3.83 -0.02 1.02 16 21 C -0.08 -1.01 4.12 -29.52 -0.12 -1.13 16 22 C 0.22 3.29 15.18 -20.78 -0.32 2.97 16 23 N -0.45 -7.75 18.53 42.14 0.78 -6.97 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.42 7.99 -51.93 -0.42 1.00 16 27 H 0.10 1.04 7.26 -51.93 -0.38 0.66 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.83 3.71 -51.93 -0.19 0.64 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.74 5.33 -51.93 -0.28 0.46 16 33 H 0.09 1.10 7.04 -51.93 -0.37 0.74 16 34 H 0.00 0.02 6.14 -51.92 -0.32 -0.30 16 35 H 0.04 0.81 7.89 -51.93 -0.41 0.40 16 36 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.09 1.61 6.68 -51.93 -0.35 1.26 16 38 H 0.07 0.98 5.79 -51.93 -0.30 0.68 16 39 H 0.10 1.09 4.98 -51.93 -0.26 0.83 16 40 H 0.13 1.87 6.50 -51.92 -0.34 1.53 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -28.67 327.77 -5.05 -33.72 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.20 Total: -0.09 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.23 Total: -4.99 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 1.47 Total: -48.26 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.67 -5.05 -33.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459891806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.772 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds