Wall clock time and date at job start Mon Mar 30 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47222 * 2 1 4 4 N 1.28714 * 125.86767 * 90.01940 * 3 2 1 5 5 N 1.28632 * 110.17641 * 179.97438 * 4 3 2 6 6 C 1.33769 * 108.88751 * 359.97438 * 5 4 3 7 7 C 1.50707 * 126.75285 * 180.02562 * 6 5 4 8 8 C 1.35315 * 125.86693 * 269.71865 * 3 2 1 9 9 C 1.50698 * 126.90941 * 0.02562 * 8 3 2 10 10 N 1.46900 * 109.47250 * 83.01440 * 9 8 3 11 11 C 1.46895 * 111.00075 * 198.27456 * 10 9 8 12 12 C 1.50703 * 109.47474 * 172.23722 * 11 10 9 13 13 H 1.07997 * 119.99660 * 4.48171 * 12 11 10 14 14 C 1.37869 * 120.00225 * 184.47822 * 12 11 10 15 15 N 1.31518 * 120.00238 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00111 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47151 * 60.00137 * 16 14 12 18 18 H 1.48495 * 109.47255 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47272 * 300.00299 * 16 14 12 20 20 C 1.46897 * 111.00409 * 74.31716 * 10 9 8 21 21 C 1.52997 * 109.47068 * 65.80421 * 20 10 9 22 22 C 1.47199 * 109.47613 * 183.62317 * 21 20 10 23 23 N 7.91133 * 84.63253 * 324.21590 * 2 1 3 24 24 H 1.09004 * 109.46840 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47459 * 299.99783 * 1 2 3 26 26 H 1.09003 * 109.47027 * 60.00569 * 1 2 3 27 27 H 1.09004 * 109.47386 * 239.99685 * 2 1 3 28 28 H 1.08996 * 109.47063 * 119.99800 * 2 1 3 29 29 H 1.08998 * 109.46997 * 84.50033 * 7 6 5 30 30 H 1.08997 * 109.46830 * 204.50484 * 7 6 5 31 31 H 1.09001 * 109.46761 * 324.50127 * 7 6 5 32 32 H 1.09003 * 109.46930 * 203.00955 * 9 8 3 33 33 H 1.09002 * 109.47521 * 323.00754 * 9 8 3 34 34 H 1.09007 * 109.47344 * 292.23699 * 11 10 9 35 35 H 1.09000 * 109.47537 * 52.23268 * 11 10 9 36 36 H 0.96999 * 119.99932 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.47628 * 185.80646 * 20 10 9 38 38 H 1.09005 * 109.47034 * 305.81098 * 20 10 9 39 39 H 1.09005 * 109.47492 * 303.62545 * 21 20 10 40 40 H 1.09008 * 109.47009 * 63.62534 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2701 2.0921 1.0431 5 7 2.6833 3.2596 0.6952 6 6 2.7086 3.3297 -0.6404 7 6 3.1284 4.5134 -1.4735 8 6 2.2877 2.1269 -1.0966 9 6 2.1451 1.7040 -2.5359 10 7 0.7490 1.8738 -2.9602 11 6 0.4683 1.0922 -4.1719 12 6 -1.0088 1.1368 -4.4676 13 1 -1.6622 1.7486 -3.8632 14 6 -1.5259 0.3968 -5.5096 15 7 -0.7303 -0.3485 -6.2453 16 14 -3.3567 0.4527 -5.8765 17 1 -3.7555 1.8474 -6.1944 18 1 -3.6561 -0.4248 -7.0364 19 1 -4.1140 -0.0203 -4.6899 20 6 0.4293 3.2930 -3.1633 21 6 1.2415 3.8353 -4.3411 22 6 0.9869 5.2774 -4.4902 23 7 0.7899 6.3897 -4.6057 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.2119 4.5084 -1.5919 30 1 2.6554 4.4538 -2.4537 31 1 2.8213 5.4340 -0.9773 32 1 2.7922 2.3193 -3.1612 33 1 2.4310 0.6570 -2.6371 34 1 1.0199 1.5139 -5.0122 35 1 0.7768 0.0583 -4.0170 36 1 -1.0943 -0.8694 -6.9781 37 1 -0.6344 3.3991 -3.3761 38 1 0.6772 3.8540 -2.2622 39 1 2.3032 3.6709 -4.1567 40 1 0.9469 3.3180 -5.2543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459891806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:09 Heat of formation + Delta-G solvation = 103.780518 kcal Electronic energy + Delta-G solvation = -22213.269949 eV Core-core repulsion = 19064.737371 eV Total energy + Delta-G solvation = -3148.532578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.19112 -39.43385 -37.35184 -36.41218 -34.81679 -33.62312 -32.18488 -31.50387 -29.53793 -28.17856 -26.61102 -25.50935 -24.96667 -22.26693 -22.03883 -20.78456 -18.83542 -18.25255 -17.94154 -17.32119 -16.78517 -16.36136 -15.86029 -15.55151 -15.30750 -15.13283 -14.64074 -14.44742 -14.18566 -14.11428 -13.68825 -13.45014 -13.40017 -13.24022 -13.09559 -12.94920 -12.82018 -12.73411 -12.59081 -12.56716 -12.31529 -12.12368 -11.79401 -11.68701 -11.46870 -11.19246 -10.83893 -10.48795 -9.84545 -8.95876 -8.10184 -6.14456 0.68953 1.46641 1.49858 1.54143 1.56817 1.61172 1.80943 1.84772 2.47477 3.01509 3.26113 3.40444 3.51778 3.72886 3.93428 3.98796 4.10395 4.16126 4.25833 4.31972 4.36059 4.49752 4.69839 4.76662 4.82562 4.83032 4.89250 4.94357 4.99588 5.13368 5.26645 5.40511 5.42711 5.44657 5.47544 5.75777 5.80473 6.14567 6.33756 6.61706 6.66439 7.00394 7.54065 7.61586 8.99065 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.006637 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.726548 B = 4218.029876 C = 5615.435607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.271 5.271 4 N -0.119 5.119 5 N -0.308 5.308 6 C -0.032 4.032 7 C -0.070 4.070 8 C 0.008 3.992 9 C 0.115 3.885 10 N -0.526 5.526 11 C 0.204 3.796 12 C -0.511 4.511 13 H 0.058 0.942 14 C 0.019 3.981 15 N -0.923 5.923 16 Si 0.939 3.061 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.275 1.275 20 C 0.073 3.927 21 C -0.064 4.064 22 C 0.242 3.758 23 N -0.491 5.491 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.001 0.999 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.134 0.866 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 -0.313 6.771 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.065 5.065 4 N -0.097 5.097 5 N -0.173 5.173 6 C -0.172 4.172 7 C -0.128 4.128 8 C -0.126 4.126 9 C -0.014 4.014 10 N -0.249 5.249 11 C 0.078 3.922 12 C -0.550 4.550 13 H 0.076 0.924 14 C -0.180 4.180 15 N -0.564 5.564 16 Si 0.767 3.233 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.201 1.201 20 C -0.057 4.057 21 C -0.106 4.106 22 C -0.075 4.075 23 N -0.169 5.169 24 H 0.117 0.883 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.018 0.982 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.151 0.849 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.912 1.013 8.418 10.939 hybrid contribution -0.776 -0.465 -1.963 2.162 sum 6.136 0.548 6.454 8.922 Atomic orbital electron populations 1.22091 0.92902 1.04478 1.02780 1.22335 0.96603 0.75277 1.06729 1.47532 1.40788 1.14229 1.03949 1.78139 1.19032 0.99483 1.13069 1.74932 1.17786 1.11245 1.13353 1.22152 1.06858 0.97147 0.91073 1.20278 1.02752 0.92328 0.97476 1.22091 1.05649 0.92622 0.92214 1.20671 0.91259 1.03007 0.86468 1.62182 1.19134 1.07649 1.35889 1.19551 0.95051 0.92441 0.85120 1.21376 0.94326 1.26228 1.13085 0.92429 1.25468 1.00602 0.95470 0.96463 1.69990 1.36171 1.29953 1.20302 0.85896 0.82250 0.77741 0.77417 1.20274 1.21602 1.20096 1.21995 1.00100 0.88516 0.95082 1.20238 1.04664 0.81480 1.04202 1.29319 0.91680 0.94972 0.91508 1.81170 1.10666 1.14343 1.10735 0.88312 0.93112 0.91679 0.86354 0.86299 0.88981 0.89969 0.91078 0.89421 0.88618 0.98177 0.96098 0.92990 0.91091 0.90825 0.84882 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 10.24 71.98 0.74 -3.01 16 2 C 0.11 2.26 6.91 86.38 0.60 2.86 16 3 N -0.27 -7.36 3.34 -334.39 -1.12 -8.48 16 4 N -0.12 -3.84 13.17 37.02 0.49 -3.36 16 5 N -0.31 -10.24 12.41 -48.60 -0.60 -10.84 16 6 C -0.03 -0.90 6.63 41.60 0.28 -0.62 16 7 C -0.07 -1.49 9.71 71.24 0.69 -0.79 16 8 C 0.01 0.22 5.96 41.35 0.25 0.47 16 9 C 0.12 2.78 4.81 85.56 0.41 3.19 16 10 N -0.53 -15.94 4.50 -905.38 -4.07 -20.02 16 11 C 0.20 7.86 4.38 85.56 0.37 8.23 16 12 C -0.51 -23.55 8.61 25.60 0.22 -23.33 16 13 H 0.06 2.69 6.77 -2.91 -0.02 2.67 16 14 C 0.02 0.93 5.46 84.65 0.46 1.39 16 15 N -0.92 -47.86 13.29 21.44 0.28 -47.57 16 16 Si 0.94 40.18 29.54 68.60 2.03 42.20 16 17 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 20 C 0.07 2.10 4.58 86.30 0.40 2.49 16 21 C -0.06 -1.57 4.12 28.79 0.12 -1.45 16 22 C 0.24 6.76 15.18 89.45 1.36 8.12 16 23 N -0.49 -16.11 18.53 20.00 0.37 -15.74 16 24 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.90 7.99 -2.39 -0.02 1.88 16 27 H 0.12 2.09 7.26 -2.39 -0.02 2.07 16 28 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 1.57 3.71 -2.39 -0.01 1.56 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.71 5.33 -2.39 -0.01 1.69 16 33 H 0.10 2.17 7.04 -2.39 -0.02 2.16 16 34 H 0.00 0.02 6.14 -2.38 -0.01 0.01 16 35 H 0.02 0.89 7.89 -2.39 -0.02 0.87 16 36 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 37 H 0.07 2.38 6.68 -2.39 -0.02 2.37 16 38 H 0.07 2.03 5.79 -2.38 -0.01 2.02 16 39 H 0.13 2.38 4.98 -2.38 -0.01 2.37 16 40 H 0.12 3.22 6.50 -2.38 -0.02 3.21 16 Total: -1.00 -61.05 327.77 4.33 -56.72 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.07 Total: 9.53 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.89 Total: -2.45 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -4.65 Total: -106.00 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.20 kcal Total: -61.05 4.33 -56.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459891806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.496 kcal (2) G-P(sol) polarization free energy of solvation -61.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds