Wall clock time and date at job start Mon Mar 30 2020 01:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 119.99659 * 2 1 4 4 H 1.08000 * 119.99896 * 203.05095 * 3 2 1 5 5 C 1.38811 * 119.99753 * 23.04764 * 3 2 1 6 6 N 1.31614 * 120.00532 * 12.92552 * 5 3 2 7 7 Si 1.86810 * 119.99692 * 192.92795 * 5 3 2 8 8 H 1.48500 * 109.46969 * 90.00340 * 7 5 3 9 9 H 1.48500 * 109.46816 * 209.99914 * 7 5 3 10 10 H 1.48501 * 109.47160 * 329.99956 * 7 5 3 11 11 C 1.46493 * 120.00440 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47592 * 89.99762 * 11 2 1 13 13 N 1.46498 * 109.47355 * 180.02562 * 12 11 2 14 14 C 1.46505 * 119.99587 * 269.99661 * 13 12 11 15 15 C 1.34774 * 120.00581 * 89.99609 * 13 12 11 16 16 O 1.21275 * 119.99547 * 0.02562 * 15 13 12 17 17 C 1.50694 * 120.00048 * 179.97438 * 15 13 12 18 18 C 1.50704 * 109.47064 * 180.02562 * 17 15 13 19 19 C 1.38668 * 120.41758 * 270.25321 * 18 17 15 20 20 C 1.38634 * 118.41845 * 180.24025 * 19 18 17 21 21 C 1.38219 * 119.16185 * 359.75413 * 20 19 18 22 22 N 1.31862 * 120.76313 * 359.97438 * 21 20 19 23 23 C 1.31880 * 121.72270 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.47006 * 275.11962 * 1 2 3 25 25 H 1.08995 * 109.47802 * 35.12362 * 1 2 3 26 26 H 1.09006 * 109.46965 * 155.12502 * 1 2 3 27 27 H 0.97001 * 120.00326 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.46923 * 329.99459 * 11 2 1 29 29 H 1.08999 * 109.47164 * 210.00059 * 11 2 1 30 30 H 1.09004 * 109.47234 * 59.99888 * 12 11 2 31 31 H 1.09005 * 109.46771 * 299.99698 * 12 11 2 32 32 H 1.08998 * 109.47147 * 270.00228 * 14 13 12 33 33 H 1.09003 * 109.47217 * 29.99988 * 14 13 12 34 34 H 1.09004 * 109.46775 * 149.99846 * 14 13 12 35 35 H 1.09001 * 109.47428 * 60.00073 * 17 15 13 36 36 H 1.09002 * 109.47476 * 299.99896 * 17 15 13 37 37 H 1.08001 * 120.79593 * 359.96738 * 19 18 17 38 38 H 1.08003 * 120.41737 * 179.72637 * 20 19 18 39 39 H 1.07998 * 119.62121 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.61140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1649 1.2234 -0.3662 5 6 1.5385 2.3401 0.4706 6 7 0.4116 2.2597 1.1458 7 14 2.3157 4.0075 0.1456 8 1 1.7984 4.5535 -1.1348 9 1 1.9756 4.9364 1.2531 10 1 3.7907 3.8579 0.0602 11 6 2.1975 -1.2686 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 7 3.1846 -2.9787 -1.4437 14 6 4.6497 -2.9791 -1.4436 15 6 2.5105 -4.1457 -1.4442 16 8 1.2977 -4.1453 -1.4448 17 6 3.2636 -5.4510 -1.4453 18 6 2.2840 -6.5962 -1.4464 19 6 1.8235 -7.1273 -0.2511 20 6 0.9270 -8.1836 -0.3004 21 6 0.5208 -8.6653 -1.5306 22 7 0.9755 -8.1319 -2.6474 23 6 1.8282 -7.1258 -2.6385 24 1 -0.3633 0.0917 1.0236 25 1 -0.3634 0.8405 -0.5912 26 1 -0.3633 -0.9324 -0.4323 27 1 -0.0152 3.0662 1.4750 28 1 1.6085 -2.0285 0.5130 29 1 3.1499 -1.1384 0.5133 30 1 3.0416 -0.9498 -1.9568 31 1 1.5001 -1.8400 -1.9570 32 1 5.0131 -2.9787 -2.4712 33 1 5.0132 -2.0894 -0.9293 34 1 5.0127 -3.8694 -0.9301 35 1 3.8906 -5.5095 -0.5556 36 1 3.8900 -5.5083 -2.3356 37 1 2.1588 -6.7305 0.6958 38 1 0.5510 -8.6247 0.6109 39 1 -0.1777 -9.4877 -1.5776 40 1 2.1789 -6.7152 -3.5738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482590621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:32 Heat of formation + Delta-G solvation = 28.188247 kcal Electronic energy + Delta-G solvation = -21099.377081 eV Core-core repulsion = 17915.273825 eV Total energy + Delta-G solvation = -3184.103256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51906 -39.36118 -36.12037 -34.88228 -33.69355 -32.05939 -31.46936 -29.17419 -27.67706 -26.36670 -25.73216 -23.72216 -23.65717 -22.21612 -20.52987 -18.95769 -17.22262 -17.05191 -16.64893 -16.54440 -16.06537 -15.34311 -15.01426 -14.63632 -14.01547 -13.67398 -13.51613 -13.32967 -13.23934 -13.16159 -12.93756 -12.60824 -12.26773 -12.21408 -12.01474 -11.67244 -11.26779 -10.86820 -10.83371 -10.49800 -10.19482 -9.98071 -9.90100 -9.80328 -9.66513 -9.56427 -9.04785 -8.69143 -8.38371 -6.71286 -5.70587 -3.19006 0.97779 1.18780 2.77009 3.17636 3.37863 3.43604 3.45268 3.73843 4.28101 4.50651 4.52885 4.63742 4.70414 4.84999 4.86525 5.10356 5.17250 5.26128 5.38526 5.45034 5.50308 5.62676 5.64725 5.73770 5.76545 5.97812 6.10934 6.16931 6.30377 6.53133 6.58170 6.66387 6.89420 6.97244 7.42958 7.58757 7.76206 7.82088 7.85700 8.34463 8.41906 9.24534 9.88100 10.38237 11.33682 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033558 B = 0.003406 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.182294 B = 8219.922393 C = 8689.957507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.259 4.259 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.144 3.856 12 C 0.092 3.908 13 N -0.612 5.612 14 C 0.077 3.923 15 C 0.508 3.492 16 O -0.531 6.531 17 C -0.098 4.098 18 C -0.114 4.114 19 C -0.061 4.061 20 C -0.171 4.171 21 C 0.093 3.907 22 N -0.486 5.486 23 C 0.112 3.888 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.001 0.999 27 H 0.253 0.747 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.181 -19.199 -4.315 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.323 5.323 3 C -0.389 4.389 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.346 5.346 14 C -0.067 4.067 15 C 0.295 3.705 16 O -0.407 6.407 17 C -0.138 4.138 18 C -0.116 4.116 19 C -0.087 4.087 20 C -0.191 4.191 21 C -0.064 4.064 22 N -0.194 5.194 23 C -0.045 4.045 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.119 -19.366 -5.027 21.237 hybrid contribution 0.733 1.464 0.745 1.798 sum 7.852 -17.902 -4.283 20.012 Atomic orbital electron populations 1.20803 0.82394 0.95589 0.99464 1.43841 1.01980 1.00410 1.86064 1.19182 0.98275 0.85633 1.35763 0.91457 1.25044 0.97885 0.98548 0.98124 1.70082 1.19397 1.27185 1.38349 0.86251 0.78664 0.84142 0.77418 1.21474 1.21744 1.20508 1.20960 0.96100 0.88670 0.92723 1.22535 0.96745 0.82044 1.01876 1.47995 1.06851 1.06696 1.73016 1.21814 0.79985 1.03321 1.01587 1.20388 0.88119 0.84924 0.77050 1.90743 1.13793 1.87150 1.49030 1.20656 0.97351 0.90571 1.05258 1.20342 0.99386 0.97205 0.94668 1.21459 0.94798 0.94323 0.98125 1.22106 0.99152 0.98204 0.99662 1.22735 0.97354 0.98435 0.87876 1.67674 1.10152 1.10088 1.31489 1.22566 0.92685 0.91923 0.97307 0.95119 0.94127 0.98046 0.93722 0.94469 0.93728 0.90786 0.90594 0.92736 0.90483 0.91418 0.87828 0.87832 0.84948 0.84794 0.82919 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.25 8.98 59.85 0.54 4.79 16 2 N -0.60 -15.59 2.92 -181.12 -0.53 -16.12 16 3 C -0.26 -7.15 9.65 -15.06 -0.15 -7.29 16 4 H 0.07 1.78 7.86 -52.49 -0.41 1.36 16 5 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 6 N -0.91 -26.91 10.71 55.49 0.59 -26.31 16 7 Si 0.91 21.83 29.57 -169.99 -5.03 16.80 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 C 0.14 3.08 5.97 -4.05 -0.02 3.06 16 12 C 0.09 1.68 5.73 -4.04 -0.02 1.66 16 13 N -0.61 -8.68 2.87 -181.57 -0.52 -9.20 16 14 C 0.08 0.73 10.24 59.85 0.61 1.34 16 15 C 0.51 7.43 7.67 -10.99 -0.08 7.35 16 16 O -0.53 -10.31 15.61 5.56 0.09 -10.23 16 17 C -0.10 -0.95 4.41 -29.04 -0.13 -1.08 16 18 C -0.11 -1.30 4.39 -104.48 -0.46 -1.75 16 19 C -0.06 -0.66 9.86 -39.28 -0.39 -1.05 16 20 C -0.17 -1.70 10.11 -39.44 -0.40 -2.10 16 21 C 0.09 0.99 11.18 -17.55 -0.20 0.80 16 22 N -0.49 -6.25 10.36 -13.25 -0.14 -6.39 16 23 C 0.11 1.35 10.86 -17.55 -0.19 1.16 16 24 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 25 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 26 H 0.00 0.02 8.03 -51.93 -0.42 -0.39 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 0.92 8.04 -51.93 -0.42 0.51 16 30 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.08 1.56 7.42 -51.93 -0.39 1.18 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 35 H 0.10 0.77 7.36 -51.93 -0.38 0.38 16 36 H 0.10 0.74 8.06 -51.93 -0.42 0.32 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 39 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -34.89 338.32 -7.45 -42.33 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.04 Total: -2.86 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.98 Total: 6.87 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.59 Total: -58.02 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.89 -7.45 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482590621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.521 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds