Wall clock time and date at job start Mon Mar 30 2020 01:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 119.99659 * 2 1 4 4 H 1.08000 * 119.99896 * 203.05095 * 3 2 1 5 5 C 1.38811 * 119.99753 * 23.04764 * 3 2 1 6 6 N 1.31614 * 120.00532 * 12.92552 * 5 3 2 7 7 Si 1.86810 * 119.99692 * 192.92795 * 5 3 2 8 8 H 1.48500 * 109.46969 * 90.00340 * 7 5 3 9 9 H 1.48500 * 109.46816 * 209.99914 * 7 5 3 10 10 H 1.48501 * 109.47160 * 329.99956 * 7 5 3 11 11 C 1.46493 * 120.00440 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47592 * 89.99762 * 11 2 1 13 13 N 1.46498 * 109.47355 * 180.02562 * 12 11 2 14 14 C 1.46505 * 119.99587 * 269.99661 * 13 12 11 15 15 C 1.34774 * 120.00581 * 89.99609 * 13 12 11 16 16 O 1.21275 * 119.99547 * 0.02562 * 15 13 12 17 17 C 1.50694 * 120.00048 * 179.97438 * 15 13 12 18 18 C 1.50704 * 109.47064 * 180.02562 * 17 15 13 19 19 C 1.38668 * 120.41758 * 270.25321 * 18 17 15 20 20 C 1.38634 * 118.41845 * 180.24025 * 19 18 17 21 21 C 1.38219 * 119.16185 * 359.75413 * 20 19 18 22 22 N 1.31862 * 120.76313 * 359.97438 * 21 20 19 23 23 C 1.31880 * 121.72270 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.47006 * 275.11962 * 1 2 3 25 25 H 1.08995 * 109.47802 * 35.12362 * 1 2 3 26 26 H 1.09006 * 109.46965 * 155.12502 * 1 2 3 27 27 H 0.97001 * 120.00326 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.46923 * 329.99459 * 11 2 1 29 29 H 1.08999 * 109.47164 * 210.00059 * 11 2 1 30 30 H 1.09004 * 109.47234 * 59.99888 * 12 11 2 31 31 H 1.09005 * 109.46771 * 299.99698 * 12 11 2 32 32 H 1.08998 * 109.47147 * 270.00228 * 14 13 12 33 33 H 1.09003 * 109.47217 * 29.99988 * 14 13 12 34 34 H 1.09004 * 109.46775 * 149.99846 * 14 13 12 35 35 H 1.09001 * 109.47428 * 60.00073 * 17 15 13 36 36 H 1.09002 * 109.47476 * 299.99896 * 17 15 13 37 37 H 1.08001 * 120.79593 * 359.96738 * 19 18 17 38 38 H 1.08003 * 120.41737 * 179.72637 * 20 19 18 39 39 H 1.07998 * 119.62121 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.61140 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1649 1.2234 -0.3662 5 6 1.5385 2.3401 0.4706 6 7 0.4116 2.2597 1.1458 7 14 2.3157 4.0075 0.1456 8 1 1.7984 4.5535 -1.1348 9 1 1.9756 4.9364 1.2531 10 1 3.7907 3.8579 0.0602 11 6 2.1975 -1.2686 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 7 3.1846 -2.9787 -1.4437 14 6 4.6497 -2.9791 -1.4436 15 6 2.5105 -4.1457 -1.4442 16 8 1.2977 -4.1453 -1.4448 17 6 3.2636 -5.4510 -1.4453 18 6 2.2840 -6.5962 -1.4464 19 6 1.8235 -7.1273 -0.2511 20 6 0.9270 -8.1836 -0.3004 21 6 0.5208 -8.6653 -1.5306 22 7 0.9755 -8.1319 -2.6474 23 6 1.8282 -7.1258 -2.6385 24 1 -0.3633 0.0917 1.0236 25 1 -0.3634 0.8405 -0.5912 26 1 -0.3633 -0.9324 -0.4323 27 1 -0.0152 3.0662 1.4750 28 1 1.6085 -2.0285 0.5130 29 1 3.1499 -1.1384 0.5133 30 1 3.0416 -0.9498 -1.9568 31 1 1.5001 -1.8400 -1.9570 32 1 5.0131 -2.9787 -2.4712 33 1 5.0132 -2.0894 -0.9293 34 1 5.0127 -3.8694 -0.9301 35 1 3.8906 -5.5095 -0.5556 36 1 3.8900 -5.5083 -2.3356 37 1 2.1588 -6.7305 0.6958 38 1 0.5510 -8.6247 0.6109 39 1 -0.1777 -9.4877 -1.5776 40 1 2.1789 -6.7152 -3.5738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482590621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:32 Heat of formation + Delta-G solvation = 5.575813 kcal Electronic energy + Delta-G solvation = -21100.357630 eV Core-core repulsion = 17915.273825 eV Total energy + Delta-G solvation = -3185.083805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43271 -40.41916 -37.83817 -36.35843 -34.59611 -33.45643 -32.80026 -30.63753 -28.69812 -28.00705 -27.31637 -25.23721 -24.49190 -23.30143 -22.30748 -20.07169 -18.78699 -18.01285 -18.00915 -17.50074 -17.25414 -16.77089 -16.28925 -15.81302 -15.54674 -15.24964 -14.80279 -14.57917 -14.29043 -14.06488 -13.96402 -13.90476 -13.87007 -13.26737 -13.07155 -12.97502 -12.80210 -12.68555 -12.49914 -12.40149 -12.15205 -11.92110 -11.63044 -11.00157 -10.71749 -10.63305 -10.39870 -9.88134 -9.73809 -8.77599 -7.83544 -5.35796 0.17205 0.37999 1.47240 1.49707 1.58174 1.67928 2.08483 2.52082 2.90374 3.30184 3.51895 3.67828 3.74080 3.85659 3.93585 4.10418 4.13117 4.20081 4.39468 4.44666 4.49693 4.57991 4.65533 4.75652 4.77305 4.82596 4.88070 4.94175 5.02794 5.11243 5.20401 5.27595 5.33144 5.56200 5.59922 5.64130 5.80783 6.29652 6.50356 7.04273 7.10501 7.24757 7.80914 8.28747 9.20250 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033558 B = 0.003406 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.182294 B = 8219.922393 C = 8689.957507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.618 5.618 3 C -0.266 4.266 4 H 0.081 0.919 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.975 3.025 8 H -0.287 1.287 9 H -0.297 1.297 10 H -0.261 1.261 11 C 0.150 3.850 12 C 0.112 3.888 13 N -0.612 5.612 14 C 0.069 3.931 15 C 0.503 3.497 16 O -0.588 6.588 17 C -0.084 4.084 18 C -0.125 4.125 19 C -0.075 4.075 20 C -0.173 4.173 21 C 0.079 3.921 22 N -0.515 5.515 23 C 0.093 3.907 24 H 0.005 0.995 25 H 0.018 0.982 26 H 0.015 0.985 27 H 0.248 0.752 28 H 0.023 0.977 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.830 -20.080 -4.553 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.342 5.342 3 C -0.396 4.396 4 H 0.099 0.901 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.803 3.197 8 H -0.214 1.214 9 H -0.224 1.224 10 H -0.185 1.185 11 C 0.022 3.978 12 C -0.014 4.014 13 N -0.344 5.344 14 C -0.073 4.073 15 C 0.293 3.707 16 O -0.469 6.469 17 C -0.124 4.124 18 C -0.128 4.128 19 C -0.101 4.101 20 C -0.192 4.192 21 C -0.077 4.077 22 N -0.224 5.224 23 C -0.064 4.064 24 H 0.023 0.977 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.179 0.821 39 H 0.193 0.807 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.849 -20.288 -5.284 23.163 hybrid contribution -0.095 1.634 0.838 1.839 sum 9.754 -18.654 -4.446 21.515 Atomic orbital electron populations 1.20476 0.83253 0.95253 0.97497 1.44082 1.01898 1.01799 1.86377 1.19608 0.98794 0.86293 1.34865 0.90134 1.25925 0.98614 1.02332 0.98268 1.70262 1.21072 1.27751 1.39836 0.85145 0.78703 0.79186 0.76665 1.21412 1.22363 1.18509 1.21031 0.95529 0.86428 0.94768 1.21904 0.96280 0.84371 0.98852 1.48041 1.08787 1.05076 1.72537 1.22155 0.76608 1.04933 1.03579 1.21282 0.87713 0.86328 0.75393 1.90723 1.16561 1.88015 1.51563 1.20694 0.96811 0.86573 1.08321 1.20550 0.99925 0.97690 0.94613 1.21825 0.94970 0.94620 0.98725 1.22448 0.98511 0.97799 1.00457 1.23217 0.97623 0.99012 0.87844 1.67664 1.11032 1.10968 1.32769 1.22849 0.93039 0.92230 0.98259 0.97701 0.96295 0.96613 0.94261 0.95804 0.92784 0.90240 0.93539 0.90532 0.90887 0.87880 0.84652 0.84538 0.83435 0.82140 0.80653 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.78 8.98 127.77 1.15 10.92 16 2 N -0.62 -32.41 2.92 -726.95 -2.12 -34.54 16 3 C -0.27 -14.59 9.65 84.03 0.81 -13.78 16 4 H 0.08 4.12 7.86 -2.91 -0.02 4.10 16 5 C -0.06 -3.20 5.10 84.86 0.43 -2.76 16 6 N -0.94 -57.23 10.71 21.65 0.23 -57.00 16 7 Si 0.98 44.78 29.57 68.60 2.03 46.81 16 8 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 9 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 11 C 0.15 6.36 5.97 86.38 0.52 6.88 16 12 C 0.11 4.00 5.73 86.38 0.50 4.49 16 13 N -0.61 -16.06 2.87 -846.76 -2.43 -18.49 16 14 C 0.07 1.04 10.24 127.77 1.31 2.34 16 15 C 0.50 13.88 7.67 87.66 0.67 14.55 16 16 O -0.59 -22.96 15.61 -3.01 -0.05 -23.01 16 17 C -0.08 -1.36 4.41 29.10 0.13 -1.23 16 18 C -0.13 -2.64 4.39 -19.77 -0.09 -2.73 16 19 C -0.08 -1.50 9.86 22.47 0.22 -1.28 16 20 C -0.17 -3.14 10.11 22.36 0.23 -2.92 16 21 C 0.08 1.63 11.18 84.68 0.95 2.57 16 22 N -0.52 -13.04 10.36 -195.85 -2.03 -15.07 16 23 C 0.09 2.16 10.86 84.67 0.92 3.08 16 24 H 0.00 0.28 7.34 -2.38 -0.02 0.26 16 25 H 0.02 1.06 7.34 -2.39 -0.02 1.04 16 26 H 0.02 0.77 8.03 -2.38 -0.02 0.75 16 27 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 29 H 0.05 2.17 8.04 -2.39 -0.02 2.16 16 30 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 31 H 0.05 1.94 7.42 -2.38 -0.02 1.93 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.20 8.07 -2.39 -0.02 1.18 16 34 H 0.10 0.85 6.44 -2.39 -0.02 0.84 16 35 H 0.14 1.35 7.36 -2.39 -0.02 1.33 16 36 H 0.14 1.33 8.06 -2.39 -0.02 1.31 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -78.18 338.32 4.38 -73.80 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.01 Total: 7.34 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 7.74 Total: 20.15 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -6.35 Total: -125.09 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -78.18 4.38 -73.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482590621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.380 kcal (2) G-P(sol) polarization free energy of solvation -78.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds