Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99879 * 2 1 4 4 C 1.52999 * 109.47445 * 274.75302 * 3 2 1 5 5 H 1.09003 * 112.73632 * 316.02918 * 4 3 2 6 6 C 1.53490 * 113.46763 * 86.85125 * 4 3 2 7 7 C 1.53242 * 83.43051 * 140.67886 * 6 4 3 8 8 N 1.47064 * 113.46528 * 185.29035 * 4 3 2 9 9 C 1.36933 * 136.06036 * 38.06587 * 8 4 3 10 10 H 1.07998 * 120.00436 * 354.64594 * 9 8 4 11 11 C 1.38819 * 120.00213 * 174.92595 * 9 8 4 12 12 N 1.31620 * 119.99721 * 359.72421 * 11 9 8 13 13 Si 1.86797 * 120.00141 * 179.72337 * 11 9 8 14 14 H 1.48504 * 109.47077 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47016 * 120.00142 * 13 11 9 16 16 H 1.48500 * 109.46858 * 239.99972 * 13 11 9 17 17 C 1.34775 * 119.99693 * 180.02562 * 2 1 3 18 18 O 1.21278 * 119.99553 * 175.09082 * 17 2 1 19 19 C 1.50699 * 120.00384 * 355.08459 * 17 2 1 20 20 C 1.50695 * 109.46970 * 180.02562 * 19 17 2 21 21 C 1.34851 * 125.89121 * 274.69024 * 20 19 17 22 22 C 1.40895 * 107.41512 * 179.88734 * 21 20 19 23 23 C 1.34852 * 107.41807 * 0.38442 * 22 21 20 24 24 N 1.36340 * 108.21708 * 359.76679 * 23 22 21 25 25 H 0.97006 * 125.63647 * 180.02562 * 24 23 22 26 26 H 1.08994 * 109.47536 * 89.99347 * 1 2 3 27 27 H 1.09002 * 109.47273 * 209.99950 * 1 2 3 28 28 H 1.09004 * 109.46946 * 329.98918 * 1 2 3 29 29 H 1.08997 * 109.46843 * 154.74438 * 3 2 1 30 30 H 1.09001 * 109.47170 * 34.75506 * 3 2 1 31 31 H 1.08992 * 114.21114 * 254.43578 * 6 4 3 32 32 H 1.09003 * 114.20558 * 27.06683 * 6 4 3 33 33 H 1.08998 * 113.38451 * 219.29776 * 7 6 4 34 34 H 1.08995 * 113.46921 * 88.92464 * 7 6 4 35 35 H 0.96993 * 120.00151 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47174 * 300.00492 * 19 17 2 37 37 H 1.09007 * 109.46630 * 60.00237 * 19 17 2 38 38 H 1.07998 * 126.29411 * 0.02809 * 21 20 19 39 39 H 1.08002 * 126.29044 * 180.16961 * 22 21 20 40 40 H 1.08000 * 125.89138 * 179.80393 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3490 1.7702 -1.4375 5 1 2.6348 0.9798 -2.1315 6 6 1.1579 2.6090 -1.9210 7 6 2.2492 3.4542 -2.5866 8 7 3.1797 2.9784 -1.5517 9 6 4.3160 3.4539 -0.9536 10 1 4.7595 2.9137 -0.1303 11 6 4.8947 4.6335 -1.4016 12 7 4.3542 5.2920 -2.4049 13 14 6.4404 5.2862 -0.5806 14 1 6.8446 4.3682 0.5145 15 1 7.5332 5.3744 -1.5821 16 1 6.1717 6.6353 -0.0211 17 6 2.1388 -1.1672 -0.0005 18 8 3.3483 -1.1691 -0.0904 19 6 1.3895 -2.4700 0.1107 20 6 2.3680 -3.6158 0.0872 21 6 2.8686 -4.2054 -1.0174 22 6 3.7435 -5.2245 -0.5918 23 6 3.7377 -5.2244 0.7567 24 7 2.8952 -4.2392 1.1792 25 1 2.7030 -4.0180 2.1039 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 3.1840 1.1186 0.4385 30 1 1.6479 2.0055 0.5858 31 1 0.5016 2.0916 -2.6206 32 1 0.6196 3.1218 -1.1239 33 1 2.0566 4.5259 -2.5375 34 1 2.5075 3.1172 -3.5905 35 1 4.7587 6.1160 -2.7182 36 1 0.8307 -2.4889 1.0464 37 1 0.6987 -2.5644 -0.7272 38 1 2.6423 -3.9431 -2.0403 39 1 4.3115 -5.8866 -1.2286 40 1 4.3033 -5.8896 1.3924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488694186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = 51.085586 kcal Electronic energy + Delta-G solvation = -21426.688272 eV Core-core repulsion = 18243.577919 eV Total energy + Delta-G solvation = -3183.110353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.05281 -40.83955 -39.61127 -36.40356 -34.31108 -32.99496 -31.78213 -29.97813 -29.90192 -27.71449 -26.74702 -25.43590 -23.84380 -21.53038 -21.20743 -21.03006 -20.24985 -18.73623 -18.38939 -17.94697 -17.22315 -16.81248 -16.43717 -15.84243 -15.47426 -14.98748 -14.65375 -14.57906 -14.23783 -14.12399 -13.94607 -13.64761 -13.44932 -13.31605 -13.13633 -13.06594 -12.96833 -12.68295 -12.47468 -12.42308 -12.21213 -11.85346 -11.61535 -11.21071 -10.89028 -10.82385 -9.70360 -9.57046 -8.93216 -8.89334 -7.94400 -5.26674 1.29388 1.40511 1.42664 1.52776 1.68525 2.01213 2.26374 2.46440 2.56211 3.27181 3.47761 3.68241 3.82509 3.96540 4.21050 4.25866 4.34142 4.45324 4.48315 4.55362 4.56962 4.66938 4.73255 4.84757 4.89117 4.95769 4.99543 5.06793 5.10375 5.22440 5.36511 5.43349 5.48482 5.54305 5.75773 5.92663 6.10160 6.23768 6.50393 6.84281 6.90130 7.27301 7.57671 8.59650 9.24131 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.004173 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.068410 B = 6708.460642 C = 7510.774521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.131 3.869 4 C 0.133 3.867 5 H 0.020 0.980 6 C -0.123 4.123 7 C 0.147 3.853 8 N -0.633 5.633 9 C -0.224 4.224 10 H 0.074 0.926 11 C -0.065 4.065 12 N -0.952 5.952 13 Si 0.975 3.025 14 H -0.271 1.271 15 H -0.293 1.293 16 H -0.284 1.284 17 C 0.498 3.502 18 O -0.587 6.587 19 C -0.056 4.056 20 C 0.021 3.979 21 C -0.214 4.214 22 C -0.231 4.231 23 C -0.010 4.010 24 N -0.549 5.549 25 H 0.424 0.576 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.038 0.962 34 H 0.007 0.993 35 H 0.249 0.751 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.947 -18.794 8.510 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.341 5.341 3 C 0.007 3.993 4 C 0.025 3.975 5 H 0.038 0.962 6 C -0.161 4.161 7 C 0.022 3.978 8 N -0.359 5.359 9 C -0.352 4.352 10 H 0.092 0.908 11 C -0.258 4.258 12 N -0.601 5.601 13 Si 0.803 3.197 14 H -0.195 1.195 15 H -0.220 1.220 16 H -0.210 1.210 17 C 0.288 3.712 18 O -0.467 6.467 19 C -0.096 4.096 20 C -0.093 4.093 21 C -0.239 4.239 22 C -0.255 4.255 23 C -0.142 4.142 24 N -0.145 5.145 25 H 0.262 0.738 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.058 0.942 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.158 0.842 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.101 -18.535 8.693 24.306 hybrid contribution 1.562 0.826 0.032 1.767 sum -11.539 -17.709 8.725 22.867 Atomic orbital electron populations 1.22212 0.76169 1.05301 1.03673 1.47952 1.08893 1.04572 1.72699 1.21414 0.96325 0.84822 0.96765 1.22496 0.90369 0.89468 0.95119 0.96208 1.23445 0.94713 0.97299 1.00666 1.21927 0.87484 0.97785 0.90617 1.46106 1.28242 1.18349 1.43182 1.19234 1.00975 1.04382 1.10655 0.90809 1.25605 1.02239 0.98734 0.99225 1.70021 1.42344 1.18035 1.29715 0.85058 0.79037 0.78014 0.77553 1.19529 1.21982 1.21022 1.21426 0.87703 0.86522 0.75590 1.90754 1.17175 1.87829 1.50905 1.20231 0.95875 0.85421 1.08057 1.19845 1.03456 0.98856 0.87100 1.20880 1.03849 1.01286 0.97891 1.21163 1.05507 1.03645 0.95232 1.22268 0.99442 0.96586 0.95887 1.41937 1.36154 1.27892 1.08519 0.73780 0.91117 0.87758 0.89741 0.94210 0.89030 0.88794 0.88567 0.94392 0.97487 0.94201 0.84616 0.84235 0.85644 0.84165 0.78942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 10.30 127.77 1.32 2.24 16 2 N -0.61 -15.97 2.87 -846.76 -2.43 -18.40 16 3 C 0.13 4.75 5.41 86.38 0.47 5.22 16 4 C 0.13 5.62 4.32 41.79 0.18 5.80 16 5 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 6 C -0.12 -4.31 8.00 30.84 0.25 -4.07 16 7 C 0.15 7.25 7.26 83.09 0.60 7.85 16 8 N -0.63 -34.25 3.65 -714.42 -2.61 -36.86 16 9 C -0.22 -13.39 10.55 84.04 0.89 -12.51 16 10 H 0.07 4.37 7.83 -2.91 -0.02 4.35 16 11 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 12 N -0.95 -59.79 11.65 21.65 0.25 -59.53 16 13 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 14 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 16 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 17 C 0.50 14.61 7.65 87.66 0.67 15.28 16 18 O -0.59 -24.92 15.59 -3.02 -0.05 -24.97 16 19 C -0.06 -0.99 4.70 29.10 0.14 -0.86 16 20 C 0.02 0.49 5.66 41.08 0.23 0.72 16 21 C -0.21 -5.85 10.77 22.14 0.24 -5.61 16 22 C -0.23 -5.72 10.86 22.14 0.24 -5.48 16 23 C -0.01 -0.21 11.94 83.21 0.99 0.79 16 24 N -0.55 -10.84 6.07 -182.77 -1.11 -11.95 16 25 H 0.42 5.66 8.96 -92.70 -0.83 4.83 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.66 6.44 -2.39 -0.02 0.65 16 28 H 0.08 1.02 7.94 -2.39 -0.02 1.00 16 29 H 0.04 1.78 7.35 -2.39 -0.02 1.76 16 30 H 0.09 2.99 7.69 -2.39 -0.02 2.97 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.10 3.02 7.93 -2.39 -0.02 3.00 16 33 H 0.04 2.04 7.38 -2.39 -0.02 2.02 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 35 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.14 1.30 7.58 -2.39 -0.02 1.28 16 37 H 0.14 1.75 8.05 -2.38 -0.02 1.73 16 38 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 40 H 0.19 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -85.94 335.84 2.97 -82.97 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.20 Total: 12.54 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.68 Total: 5.95 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.90 Total: -126.75 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -85.94 2.97 -82.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488694186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.060 kcal (2) G-P(sol) polarization free energy of solvation -85.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds